TCONS_00037193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037193
Unique NameTCONS_00037193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037193 ID=TCONS_00037193|Name=TCONS_00037193|organism=Clytia hemisphaerica|type=transcript|length=725bp
GCCTGGATGGCGTTCACTAATCCCGCCCGTTTCGATGGCTTGAAATTATG
TCATGCTATGTTATGAATATCCGTTCGCACAGTTCGGCAAAATGAAACAA
GACGTCATCTATTCCGATGAAGAAATGAAATGTATTTGAAAGACGACACA
GGGAATTGGTCACAAGAAGAAACCAACTATTTGCTCGAATTATCCAGaga
GTAAAGTGATGGAAGATATTAAGCTACGTTACTACGATGTCGTGCGGAAG
CTTTTGATCGCGCGTACACCGCCTGGTCAAGAAACACAAGACCTACCGCC
AGTCTATGATACGGAACAtgagaaaatacaaaaagaacAATTGATCAAAC
TTTTCAATCGAACTCCTGAAGAGGTTGAAGAGGAGGAAGTCCTGGTACAA
CAGCTCAAGAAAATCAAATCTCATAAAAAGGAGCGCGAAAAGAAGTTGCA
CAACTTCAACAAATTGATTACAACAGCCGAAAACAAANAGGAGCGCGAAA
TGAAGTTGCACAACTTCAACAAATTGATTACAACAGCCGAAAACAAACCG
TCTTCTCTATCGCTTCTTGGATCCAATGACAGGAGTGGCATTTATCGTCA
CATCACACGACAGCTGATGGACACATTATTAAGAAAGagaagaaactgaa
aacaaAGAACAAGAAACGGCGCGCCGAGTCTACCACAACTTCCAGCGCAT
CGAGCGCGACTTCCACCACAAATAN
Run BLAST on NCBI

transcript from alignment at sc0001590:30334..42954+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037193 ID=TCONS_00037193|Name=TCONS_00037193|organism=Clytia hemisphaerica|type=transcript|length=12621bp|location=Sequence derived from alignment at sc0001590:30334..42954+ (Clytia hemisphaerica)
GCCTGGATGGCGTTCACTAATCCCGCCCGTTTCGATGGCTTGAAATTATG
TCATGCTATGTTATGAATATCCGTTCGCACAGTTCGGCAAAATGAAACAA
GACGTCATCTATTCCGATGAAGAAATGAAGTAATGGTTTCATTCATTACG
TAATTCTTCAATCGACGAGAATGGTTTTGGTTACAAAGAATGACTGAAAG
AGAAGAATAGAATCACTCACTGAGCTCGTTCTCATTCCTTAAATTTTGAG
ACCTAACTTTTCATGATGACGatgcaataaaaacaattttttgttataGA
TAGTCTAACATCTCTCTGATAACATCGAATTCCTTCCTGGAATTTTTATT
GGAAAATCCATACATTAGTTTTCTGACTAAATTGAGTACTTTAGCCCTAT
ATGCTTCGATGTGTATTTTTGCTGGAAGAAGAAAGTTATTTCAATTCGTT
CGCCTTTTTAGATGTATTTGAAAGACGACACAGGGAATTGGTCACAAGAA
GAAACCAACTATTTGCTCGAATTATCCAGGTATTTCTACATTTTCTCGAG
ACATTCAAACTCATGAAATACGCAATAGTGGTGTAGTGACGATCATTTTT
GCCCTTCGTACGGAAGGTCAGAGTTCGATTACTACTCGGTCttgtgattc
acttggcaaaCGAAGTTCCTTCCCCTAGGGCAACCCATGCGATATGGCGG
GATACTATACTCTGATATGATAATTGCACATCATTGCACACGTGCAATTG
AATTCCCATTGCAACTAAGGGACCCCTTACAGACACgcttcattttgagg
aaaaaagcatgaaTTCATTCTATCTGATAACAGTTCACTGATCAAACATC
AATAAACTTtgttaaatatcttttgattgaatgaatatttttgaaacatt
ttttcacagtgatgatgatctaagatcgAAGAGTCACTCCTCTGAAAATG
GTAatcataccacatttctacaagaagttgatttttttcttcttcatttt
tcattttcatttgtcttttttttcccaaattttttacttgataatattcc
actcacaaatatctttttaaggagcataaaatcgcaacttgattcgaatt
ctatcaaaagttacagaccatttttgtctcagctgcaaattattttgaga
cagactttaactCGTATGCAATGTCATAATACTGAAAGTGATGCCCATTG
TATAGAGTTGACATGTCAAAGATAACTCGACGCtctcttttgtcattttt
aaaaatgagGTTTGCACCCCAGAAAAATGCATTATTAGAGAAGGAACAAC
ACCAAAAGACACTCTGACCTGCAGGAAGTGCCACCGAGATGTTCATTATN
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agattcgagattccagtccaatatatatgcgtgaagctatgagtgcctcc
tcgtcgctgcgctcctgcgggggcaatgatgcaggaaatataattggata
tgaattgacagtagaaaatGGCACGTCTTAAATAGCAAATGAATATACTA
CAGGTGTTATATGTATTATATGTTATATTTGCAAATCTGACTTGCGATTC
AAGGAAGTGCTCTATACCATCGGAAGAGCGGCATATCGGTCAAGAATaga
gacaaatttatttttcgatACTCGCAGAGTTTCGTGTcgtttcaggcagt
cttcagtcGTGATTTTAGtgaagactgcctgaaacggcacgaaactccGC
GAGTatcgaaaaataaatttgtctctATTCTTGACTGATATTATATATGT
TATATCTGTTATCATGCTATTATGTTTTTCgttttcggtagccggtaatt
ttcTCCCCAACTCAAAAATTTTACTCCCCAACTCAGGACAAGAAAGGTTT
CCAAACACAAAGCAAAAACGGGATTTTGAAAAGCGAAAGTATATAAGTTG
TTACTGCCGTGTGTAGGCAGCACATAGGATgtaacatacacgttttttta
tataaggaacacgtttataaggaactcgaggctgaaaatggtccaaaaaa
taaggaattatTAAGGAATTATCTCAGGCTGAGaacaagaaaacaagttt
taaggaacagtaagagatggttatccaaacttagcagctatgtaaataag
gaactcgataaggaactttgagactgaaattctctgtaaaaataaggaac
tccaggctcagagcaaagttgaggttccttataaaaaaaaacgtgtattg
gcaCTCCTTCGCTATGTTTCCCAATTGTTTTATATCGATTTTTAATAAGG
ATAATTATATCGCTAATTTTCCCAGTCTTAGTATAGTCCTTTCAATCCCT
TGAGCATTGGGTCTCATTATCTCGCGTTTGGGcttctttgtattttattt
gCTCTTTTTATTGTCTCTATTGATTCCTTAGGGTTGGTTACACATCTCTT
GGgaaattaaagttttttctgTAGTGTTTTGACAACATTTCTAATTTGAT
TATGAAATCATTTTTGTAAAGTAGCTACTGTGTGTGCATGTGAACTGACG
TGTTGGGTGGTACCGTCTAGTGGTTTTTAGACAGTGATTTTAGTAAGTAT
CTTTTGGATTTTGGTTTTGTATAGCCTCTCTATAACAATCACTGTTTGCT
CCTAGCCTTTATTTTTCTGTCTACTTATTTCTTGCCTTTTTTTGGACTTC
GACATTTTCAGTTTCTAACTCAAGtgttttttagattttgttCGCATTTT
CTGGTATTTTTGTGCTTATTTTAGCTGTTTGCCAAAGATCATTCCCGTTC
AAAATCCTATCCTATTCGTTGGGACCTTTTTGGTAATCAGTCTGGTGGGG
AAAAGTTCTTTTTGCCCAGTTCTTTAATAGTATACATTTTTTCAGGACGT
CTACGCCAAATAAAATGACTTTGCATGTTTGCTAGTTGTATACTTGTAAG
TTCTATAGAGCGTTGGGTTCTTGTGGCacgattttccaaaaattttcttc
cttgTGTTAGAACTTgtcgtattttttttttatcttatcttTATATGCCA
ACACTTTTTCTAGGATTACTGTAGTGTtagtctggagaccatactctgtt
acaaaaatatttctatcctgttaaaatcccaacaacttcactgaaataca
gagtatggaattattgactcgattcaaatcacttcaaatcacaaaagaaa
aaaccgttattttttcaaaacaattcaaaagctcGCGCCACTTCTTGAAA
CAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatacttttgtttatcaa
atcataacaataagatattagccaatcaaattctgcgattaattcttgca
tcttgtataattcccggctacttctgtctatactttgatacttttttgaa
accacatagacagagaagtcgggtctcccagctactGTAGTGTGAAAGTC
TTTTGAATGATTTTGTTACTTTaacaactttttcattttttagagaGTAA
AGTGATGGAAGATATTAAGCTACGTTACTACGATGTCGTGCGGAAGCTTT
TGATCGCGCGTACACCGCCTGGTCAAGAAACACAAGACCTACCGCCAGTC
TATGATACGGAACAtgagaaaatacaaaaagaacAATTGATCAAACTTTT
CAATCGAACTCCTGAAGAGGTTAGTCACAGAGCttaggaatttttgaaaa
ataatttttttgacttttcaaaacTAGGTCGGCTCAAAACCAGCttatat
attttcataaaaatgctCTTTCATATGTTAGATACGAGAGTTTCGGAAAC
TCATTCCTTTTGGAAATATAGACCGTCAAAGTTAGGCCCCTTTTAGGAGC
ACCCTGTTCCTTTTGTGTGTCGATACGATACCCATACATCGTCAATACTG
TACGTCTTGACTTTTNCTACGTTACTACGATGTCGTGCGGAAGCTTTTGA
TCGCGCGTACACCGCCTGGTCAAGAAACACAAGACCTACCGCCAGTCTAT
GATACGGAACAtgagaaaatacaaaaagaacAATTGATCAAACTTTTCAA
TCGAACTCCTGAAGAGGTTAGTCACAGAGCttaggaatttttgaaaaata
atttttttgacttttcaaaacTAGGTCGGCTCAAAACCAGCttatatatt
ttcataaaaatgctCTTTCATATGTTAGATACGAGAGTTTCGGAAACTCA
TTCCTTTTGGAAATATAGACCGTCAAAGTTAGGCCCCTTTTAGGAGCACC
CTGTTCCTTTTGTGTGTCGATACGATACCCATACATCGTCAATACTGTAC
ATCTTGACTTTTCGTACTTTAAATATTTTATGGAATTAGCTAGACTAGGG
TTACCAAGTTAGTTAATTGGGTCGGCCAGAAAAGCACTTTTCATAGCCTA
CGAAAGGTGACTTTTTTTTATATCTTGTTATATTACAAGCTTTCTGTACA
TATATAATGTGAAGTGATGAAGTAATAAAGTACCTGAACAGCAGTAAATT
CTTCGTGAAAAACAGTTCCTTCAGCAAAGaatgcttatacttactatctC
AACAAAGTTTTTGCTTCATTAAGGTTGAAGAGGAGGAAGTCCTGGTACAA
CAGCTCAAGAAAATCAAATCTCATAAAAAGGAGCGCGAAAAGAAGTTGCA
CAACTTCAACAAATTGATTACAACAGCCGAAAACAAANAGGAGCGCGAAA
TGAAGTTGCACAACTTCAACAAATTGATTACAACAGCCGAAAACAAACCG
TCTTCTCTATCGCTTCTTGGATCCAATGACAGGAGTGGCATTTATCGTCA
CATCACACGACAGCTGATGGACACATTATTAAGTGAGTCTTCCCCTCCCC
TCCTTTGTTACTTAAGAAATAATTCTCTCTTGTTACGTTCTATGTATCTA
CCAATCTCTCCAACCGCTCTGATTGGTTCAAAACTGagttaaaaaaagtt
ataaaccTTTATCGCACAACAATCTTTCTTAGAGTATATGGCCCCTAAAA
CGGCGttattaaaatgaggattctgacttttagattttacagaattagac
gatttttgtttactttgaaaaaatgacggttatacttaaaaatgagtatG
TTTTGGTTTGAGACAGctaataacatatttgcgtctaaaggaaacgggct
tttccaaaaaaaaccgtatacgccctgttgaggaggtccatttccgttcc
aagggggtaaggtttgatgtgtggcggaattccacagggagatacaaaaa
tctgtcaaaaataactggaattccagggggggAGGCCTTTTAAATcgtac
taaaattcagaattccagaggggttcaAACCTGAAATTGTCTGGAATTCC
AGAGGGTTACAtcatttccagccacaaaatgatggacctcctcaacaggg
agtatacggtttttttctggaaaagcccaatattaCGTCTGAAGGAAATA
ATTATTACAACgcaaaaattagataaaaatggCATATAGTCCactaggaa
actttctacacctaatgcagATACTTTTGTGACTTTATGAGTAGAATATA
TAGTATCTTAAAGGTCAATCAGTCTTTTAggggccctagaatcagcattg
ataaaaccgaaaattcattcattttttctttgcatgaaaaataggctgat
tatgtcaaaaaatttagaaacaagtaaaaaacatttaaggctcaaaaggc
tgatttcctaagaaacattgaggctgcttggtaaaactagtttcttaaaa
aaaaacgtgtaatttatATAAATCAAAGAGTCATAGTTTTCATAAACTAC
GCTAAGAGCTCTTCGTTGAATTTTCTCAATTTGTTTGTTGGTGTGTTTTA
CAAAATTCATCCAAATCAATGGACATTAAttagaattagaaaaaatataG
GCGTGACACAAGGCCTTTgctgtttttaaagaaatgaaGGGGCGAATGCg
tcgaaagttcgattttagcctggacgtcaattgataattgcgcgcatagg
ccccgacaaagtcaaATCTTTTCAATCAGTTGCCTTTTAAAGGCCTATTT
GGCGCTGGGTACTGGGCCAAAAAAACGTACTAATGAATTCTCGGAATAAC
GGCTTGAGAGCAAATTTCTCCCAACTccgttggaaagataaaagTTCTCA
AATTCAGACCCGGTGTGAAGTTATACTTTTTTCTTAGCCattctgttgaa
tttcaaaacttgaccggttcactgagacaggggtgtggtAGAGGAGTAGT
CTATTTTGTGtctattttttcattgttttagaCCTATATTTTGATATAGC
TATGTTATATATAATTCCTCAATTGGTCTTACATTTCAGTTCAACCAGTA
AGTCCAACATTCAAGTgaaatcaaaaactttgaggacattaaagattttt
attgttttggtgCATATCTAAACACGCTGTAAGTTCTGTGCTTAATAAAG
CTATGATTACTTGTAGTCTTTAGAGAATTGTTCGTTATCCTTGAAGCTTT
TGCCAACGCAACAATTTTCTTGCGATAAAAATTACAAACGTTCATTTCTT
CCAGCACCAGAAGAGTTTTTTGTCCTTCAAATCGTTTTAAAAAACTAACA
TGTCCAAATCTAAATAAATACTTTACTGCATTTTTTATCGTTTTAGAGGC
TGTAATAATCTATATCTCAGGCGGACAAACATCGAGGAGGAACGAGCCGC
AAATGGCATGAAtttaataagaacaatgaggcatTTTGCCAAAAGTGAGA
AATGTACCTcaagtctttttttatttgagtatTTTATATCGTTTTAGAGG
CTGTAATAATCTATGcctcaaacaaacaaaaaagaaggAGGAGCAAGCTG
CAAACGGAatggcttttataagaacaatgaggcggTTTGCCAAAATGAGT
GATGTactgaaagtcttttttttatttaagtattttataTCGTTTTAGAG
GCTGTAATAATCTATGcctcaaacaaacaaaaaagaaggAGGAGCAAGCC
GCAAATGGCATGAATTTCATAAGACAAATAAGAAAGTTTGCCAAAGTGAG
TGATGTACTGAGAATCTTCTTTTGAGTATTTGAGTTTTTTATCATATGCA
ACCAGGTTTTGTAAGTCTAGTTGCTCTTGCTCATAACCTGATCGTATCAG
TAAAAAGAGTTTCTTCGAAGGCCAAACACAAAATAACGGTTTCTAGTCAG
CTAGCTTCAGTGTCGAGAACTTTGCTTAAGGATTAATGAAAACCTTGTTT
ATGTCATGATAATTGTCCActtattttttaaggaaaaacatgGCTTACTG
TTAAAGGGCAACTCATTCGATTTGGTCAGCCTCTTGAAGGAGGAGGGTAA
GAATTTTATTTGGTTAAACTTTTTTGGTTGCTACTTTATACGTCTATTAG
ATTTTCAGGGTCCACGTCACGGGGCAGGGGCAGGGGGACCATCTTTTTGC
AAAACGAAAATCTTTTGGTTGCGTGTTCTTAGACTCTATATNNNNNNNNN
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NNNNNNNNNNNNccccccccccccaattcaTGGCGTGGGAcctgttgttt
tgattttgctcaACTATCGTgagtttcattttttgaacaATGAATTACAC
AATATTTAATGAAAAGCGAATTTCTCTGCAAAATATGAAACAAAACAATG
GATTTTTAATTACTCTAATTAACTTTTGGAACGTAGAGTATCAAATCTAA
GTTTTGACATTAAACTTAAGACTGAGAATATAACCAAGAGGTCAGTGACC
CTGGAGGCAGTTTTTCAATCTTGGCCAAGCTAAATATTTTGATCTAAGTT
TATTTTTTAAGtagcattttcttgaaattcagTTCCATTTTTCAAGGACA
AATGGCTAGTATTTAACGTATTTGGTGTCacttttgtcaaaatttcaaaa
aatgaaggtgcTTCAAAATGTCTTTCATTGGGTTTGACACAACATTTTCA
GGATAATGAGGGCTTTAAAATCGACCCTCTATGTATGTAGAACACTGATG
TTTTATTCTTGGTGTACCAATCTtcaattgattgaaaatttgacccAAAG
TTTAGACACCATCATTTATTgatgttttgcaaaaaaaatcaaaaccaagc
CGAGACAAGCATTGAATTCGATTTAGCAATGTTGATATATTCTTAGACTG
TCTATTTGGAAAGTTTCCTGGTTGCAAACGCAATGGGCACATGATTAAGT
GAGTCTTCCCTTCCCCTCCTTTGTTACTTAAGAAATAATTCTCTCTTGAT
AAGTTCTTCTCTGTTCTCTGTATCTATCAATCTCTCCAACCGTTCTGATT
TTTTTCCTAAACTTTTACAGTAGAAGctcaataactcgaacaagcACGGG
GAACTTTGAAATTTGTTATGGgttaaggtttataaggcattgttaactga
ccataaaacttgttcgagtaaaAGAGATTCgatttatagaggttcgaatt
caAGAGACTGTATTTTTGTCGATCTCAGGAAAGagaagaaactgaaaaca
aAGAACAAGAAACGGCGCGCCGAGTCTACCACAACTTCCAGCGCATCGAG
CGCGACTTCCACCACAAATAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022005XLOC_022005Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037193-exon-sc0001590-1491911889:30334..30462TCONS_00037193-exon-sc0001590-1491911889:30334..30462Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1510915933:30334..30462TCONS_00037193-exon-sc0001590-1510915933:30334..30462Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1575043694:30334..30462TCONS_00037193-exon-sc0001590-1575043694:30334..30462Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1491911889:30795..30862TCONS_00037193-exon-sc0001590-1491911889:30795..30862Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1510915933:30795..30862TCONS_00037193-exon-sc0001590-1510915933:30795..30862Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1575043694:30795..30862TCONS_00037193-exon-sc0001590-1575043694:30795..30862Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1491911889:36327..36502TCONS_00037193-exon-sc0001590-1491911889:36327..36502Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1510915933:36327..36502TCONS_00037193-exon-sc0001590-1510915933:36327..36502Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1575043694:36327..36502TCONS_00037193-exon-sc0001590-1575043694:36327..36502Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1491911889:37407..37665TCONS_00037193-exon-sc0001590-1491911889:37407..37665Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1510915933:37407..37665TCONS_00037193-exon-sc0001590-1510915933:37407..37665Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1575043694:37407..37665TCONS_00037193-exon-sc0001590-1575043694:37407..37665Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1491911889:42862..42954TCONS_00037193-exon-sc0001590-1491911889:42862..42954Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1510915933:42862..42954TCONS_00037193-exon-sc0001590-1510915933:42862..42954Clytia hemisphaericaexon
TCONS_00037193-exon-sc0001590-1575043694:42862..42954TCONS_00037193-exon-sc0001590-1575043694:42862..42954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001590supercontigsc0001590:30334..42954 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.198684	0	0	1.02181	0	0	0	0.456164	0.105297	0	0	0	0	0	0	0	0.016428	0	0	0	0	0	0.0146961	0	0	0	0.359803	0.0528245
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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