TCONS_00036919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036919
Unique NameTCONS_00036919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length973

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036919 ID=TCONS_00036919|Name=TCONS_00036919|organism=Clytia hemisphaerica|type=transcript|length=973bp
attttcatcCACAGAACTCGCTTTGAAAGGTGAACAAGCTTAAGAATGAA
GATTCTTGCATGTTTACTGTTGCTCCTGTCCATCTATATGGTTAATGGAG
ACAACACCAGGGATATCAAGACGTTGAAAAGCAGTCTCCAGCTCCTGTTA
AAACGAATCGAATTAAAATCCTCTTATTGTTCTGCGCAAGCTCAAGGACA
ATGTGGCACGTGCATTTGCAAAGACGATTTCAGTTTGAGAAAGAAGTATT
ACTGTGATTGCCGTAACCAATCACCACAGCGCGATTGCCTTGCACATCGA
CAAAATGGGATGAAAATTGACGGTTATTATACAGTCACAATGAATGGATC
TCGTACGACTCAAGTTTATTGCGATCAAACAACTTCAGGAGGCGGTTTGA
CCGTCATTCAAAGACGTATGGATGGGTCCACAAATTTCTATAGAAGATGG
AATACGTATAAgGTTGGATTCGGTAAACTTCATCGTGAATTTTGGTTGGG
CAATGAAAACATACATCTTTTGAGTCTACAAGCTGTTTATCCGAAAGGCT
CAGAATTAATGATAAATATGAGGCTGCATGCTGGTAATTATTGGTACCGT
TACAGTCATTTCCAGGTGGACAGTGAAAGAAGCCATTATCTTCTCCATGT
TAGTGGAGCCTCTGGGAATCTCTCCCCTTCCTTGTTCGTATCCTATCAAA
ACAAGGTTGAATTTTCAACATGGGATAAAGACCGAGATGGTTCGTCTTCT
TATAATTGTGCTAGGGACTACCAATTCTCTGGTTGGTGGATCAATGGGGC
GGGCAATAAATGCACAGGTTACCAAGCAGCTGGTCCATACGGCAAGTACC
GTACTAGAACGTGGTACAAGAGGATCAATGCATACAGTATTATCATCCAA
CCTTTGTTGAGATGAAAGTACGTCGCTTGTAAAAATTATATTGATTTGTT
TCATTACAAATTTTATTACAATA
Run BLAST on NCBI

protein sequence of TCONS_00036919-protein

>TCONS_00036919-protein ID=TCONS_00036919-protein|Name=TCONS_00036919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
MKILACLLLLLSIYMVNGDNTRDIKTLKSSLQLLLKRIELKSSYCSAQAQ
GQCGTCICKDDFSLRKKYYCDCRNQSPQRDCLAHRQNGMKIDGYYTVTMN
GSRTTQVYCDQTTSGGGLTVIQRRMDGSTNFYRRWNTYKVGFGKLHREFW
LGNENIHLLSLQAVYPKGSELMINMRLHAGNYWYRYSHFQVDSERSHYLL
HVSGASGNLSPSLFVSYQNKVEFSTWDKDRDGSSSYNCARDYQFSGWWIN
GAGNKCTGYQAAGPYGKYRTRTWYKRINAYSIIIQPLLR
Run BLAST on NCBI

transcript from alignment at sc0001535:51904..53156+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036919 ID=TCONS_00036919|Name=TCONS_00036919|organism=Clytia hemisphaerica|type=transcript|length=1253bp|location=Sequence derived from alignment at sc0001535:51904..53156+ (Clytia hemisphaerica)
attttcatcCACAGAACTCGCTTTGAAAGGTGAACAAGCTTAAGAATGAA
GATTCTTGCATGTTTACTGTTGCTCCTGTCCATCTATATGGTTAATGGAG
ACAACACCAGGGATATCAAGACGTTGAAAAGCAGTCTCCAGCTCCTGTTA
AAACGAATCGAATTAAAATCCTCTTATTGTTCTGCGCAAGCTCAAGGACA
ATGTGGCACGTGCATTTGCAAAGACGATTTCAGTTTGAGAAAGAAGTATT
ACTGTGATTGCCGTAACCAATCACCACAGCGCGATTGCCTTGCACATCGA
CAAAATGGGATGAAAATTGACGGTTATTATACAGTCACAATGAATGGATC
TCGTACGACTCAAGTTTATTGCGATCAAACAACTTCAGGAGGCGGTTTGA
CCGTCATTCAAAGACGTATGGATGGGTCCACAAATTTCTATAGAAGATGG
AATACGTATAAggtaaattgtgaaaaactcTTCTTCCCTTTTTCGATTCT
TTAAGAACTTTTCTGTTGAAAATACTCTACCCAGCCCTTTTTAAGTTGTT
TCTGCTTTTTAATCATGCAAATACCCCTCATAGGTTTTTTGTAGACATTA
TTCATTGACTCTCATTCGTGGCAGCTTTTATGATAGCGTGCatgatttta
attttgttaaatACATCAATGAATTTTTAACATGACCTCAACCTTGTCAA
AGGACCTTTGTTATTTCATATTCTTTGTTACATTTCTTTCAGGTTGGATT
CGGTAAACTTCATCGTGAATTTTGGTTGGGCAATGAAAACATACATCTTT
TGAGTCTACAAGCTGTTTATCCGAAAGGCTCAGAATTAATGATAAATATG
AGGCTGCATGCTGGTAATTATTGGTACCGTTACAGTCATTTCCAGGTGGA
CAGTGAAAGAAGCCATTATCTTCTCCATGTTAGTGGAGCCTCTGGGAATC
TCTCCCCTTCCTTGTTCGTATCCTATCAAAACAAGGTTGAATTTTCAACA
TGGGATAAAGACCGAGATGGTTCGTCTTCTTATAATTGTGCTAGGGACTA
CCAATTCTCTGGTTGGTGGATCAATGGGGCGGGCAATAAATGCACAGGTT
ACCAAGCAGCTGGTCCATACGGCAAGTACCGTACTAGAACGTGGTACAAG
AGGATCAATGCATACAGTATTATCATCCAACCTTTGTTGAGATGAAAGTA
CGTCGCTTGTAAAAATTATATTGATTTGTTTCATTACAAATTTTATTACA
ATA

Coding sequence (CDS) from alignment at sc0001535:51904..53156+

>TCONS_00036919 ID=TCONS_00036919|Name=TCONS_00036919|organism=Clytia hemisphaerica|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0001535:51904..53156+ (Clytia hemisphaerica)
ATGAAGATTCTTGCATGTTTACTGTTGCTCCTGTCCATCTATATGGTTAA
TGGAGACAACACCAGGGATATCAAGACGTTGAAAAGCAGTCTCCAGCTCC
TGTTAAAACGAATCGAATTAAAATCCTCTTATTGTTCTGCGCAAGCTCAA
GGACAATGTGGCACGTGCATTTGCAAAGACGATTTCAGTTTGAGAAAGAA
GTATTACTGTGATTGCCGTAACCAATCACCACAGCGCGATTGCCTTGCAC
ATCGACAAAATGGGATGAAAATTGACGGTTATTATACAGTCACAATGAAT
GGATCTCGTACGACTCAAGTTTATTGCGATCAAACAACTTCAGGAGGCGG
TTTGACCGTCATTCAAAGACGTATGGATGGGTCCACAAATTTCTATAGAA
GATGGAATACGTATAAgGTTGGATTCGGTAAACTTCATCGTGAATTTTGG
TTGGGCAATGAAAACATACATCTTTTGAGTCTACAAGCTGTTTATCCGAA
AGGCTCAGAATTAATGATAAATATGAGGCTGCATGCTGGTAATTATTGGT
ACCGTTACAGTCATTTCCAGGTGGACAGTGAAAGAAGCCATTATCTTCTC
CATGTTAGTGGAGCCTCTGGGAATCTCTCCCCTTCCTTGTTCGTATCCTA
TCAAAACAAGGTTGAATTTTCAACATGGGATAAAGACCGAGATGGTTCGT
CTTCTTATAATTGTGCTAGGGACTACCAATTCTCTGGTTGGTGGATCAAT
GGGGCGGGCAATAAATGCACAGGTTACCAAGCAGCTGGTCCATACGGCAA
GTACCGTACTAGAACGTGGTACAAGAGGATCAATGCATACAGTATTATCA
TCCAACCTTTGTTGAGATGAATGAAGATTCTTGCATGTTTACTGTTGCTC
CTGTCCATCTATATGGTTAATGGAGACAACACCAGGGATATCAAGACGTT
GAAAAGCAGTCTCCAGCTCCTGTTAAAACGAATCGAATTAAAATCCTCTT
ATTGTTCTGCGCAAGCTCAAGGACAATGTGGCACGTGCATTTGCAAAGAC
GATTTCAGTTTGAGAAAGAAGTATTACTGTGATTGCCGTAACCAATCACC
ACAGCGCGATTGCCTTGCACATCGACAAAATGGGATGAAAATTGACGGTT
ATTATACAGTCACAATGAATGGATCTCGTACGACTCAAGTTTATTGCGAT
CAAACAACTTCAGGAGGCGGTTTGACCGTCATTCAAAGACGTATGGATGG
GTCCACAAATTTCTATAGAAGATGGAATACGTATAAgGTTGGATTCGGTA
AACTTCATCGTGAATTTTGGTTGGGCAATGAAAACATACATCTTTTGAGT
CTACAAGCTGTTTATCCGAAAGGCTCAGAATTAATGATAAATATGAGGCT
GCATGCTGGTAATTATTGGTACCGTTACAGTCATTTCCAGGTGGACAGTG
AAAGAAGCCATTATCTTCTCCATGTTAGTGGAGCCTCTGGGAATCTCTCC
CCTTCCTTGTTCGTATCCTATCAAAACAAGGTTGAATTTTCAACATGGGA
TAAAGACCGAGATGGTTCGTCTTCTTATAATTGTGCTAGGGACTACCAAT
TCTCTGGTTGGTGGATCAATGGGGCGGGCAATAAATGCACAGGTTACCAA
GCAGCTGGTCCATACGGCAAGTACCGTACTAGAACGTGGTACAAGAGGAT
CAATGCATACAGTATTATCATCCAACCTTTGTTGAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021807XLOC_021807Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036919-proteinTCONS_00036919-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036919-exon-sc0001535-1491911889:51904..52365TCONS_00036919-exon-sc0001535-1491911889:51904..52365Clytia hemisphaericaexon
TCONS_00036919-exon-sc0001535-1510915933:51904..52365TCONS_00036919-exon-sc0001535-1510915933:51904..52365Clytia hemisphaericaexon
TCONS_00036919-exon-sc0001535-1575043694:51904..52365TCONS_00036919-exon-sc0001535-1575043694:51904..52365Clytia hemisphaericaexon
TCONS_00036919-exon-sc0001535-1491911889:52646..53156TCONS_00036919-exon-sc0001535-1491911889:52646..53156Clytia hemisphaericaexon
TCONS_00036919-exon-sc0001535-1510915933:52646..53156TCONS_00036919-exon-sc0001535-1510915933:52646..53156Clytia hemisphaericaexon
TCONS_00036919-exon-sc0001535-1575043694:52646..53156TCONS_00036919-exon-sc0001535-1575043694:52646..53156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001535supercontigsc0001535:51904..53156 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0989705	0	0	0	0.0484706	0	0.0618533	4.62599	5.90164	129.474	146.237	11.4166	12.284	6.10132	3.01557	7.90584	6.6537	104.65	87.2712	4.90181	5.96209	5.82128	8.39314	341.956	461.87
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00036919 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.400e-34
Identity = 80/203 (39.41%), Postives = 107/203 (52.71%), Query Frame = 1 
Query:  274 PQRDCLAHRQNGMKIDGYYTVTMNG--SRTTQVYCDQTTSGGGLTVIQRRMDGSTNFYRRWNTYKVGFGKLHREFWLGNENIHLLSLQAVYPKGSELMINMRLHAGNYWYRYSHFQVDSERSHYLLHVSGASGNLSPSLFVSYQNKVEFSTWDKDRDGSSSYNCARDYQFSGWWINGAGNKCTGYQAAGPYGKYRTR---TWY 867
            PQ DC  H  NG  + G Y + +NG  S+  QVYCD TT GGG  V QRR +G T+F+R+W  Y+VGFG +  EFWLG +NIH ++ Q  Y    EL ++MR      +  Y  F V+  R+ Y L +   +G    SL  SY     FST D+D D + + NCA  Y+ + W+ N     C      G YG+ R      WY
Sbjct: 1135 PQ-DCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRITSQGRY----ELRVDMRDGQEAAFASYDRFSVEDSRNLYKLRIGSYNGTAGDSL--SYHQGRPFSTEDRDNDVAVT-NCAMSYKGAWWYKN-----CHRTNLNGKYGESRHSQGINWY 1324
The following BLAST results are available for this feature:
BLAST of TCONS_00036919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR3.400e-3439.41Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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