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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036848 ID=TCONS_00036848|Name=TCONS_00036848|organism=Clytia hemisphaerica|type=transcript|length=3551bpRun BLAST on NCBI protein sequence of TCONS_00036848-protein >TCONS_00036848-protein ID=TCONS_00036848-protein|Name=TCONS_00036848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=620bp MKIQTDNSTEVMNGSLPLLEYLETVFTNVAKETKDNKRFTSDGIMVEVSTRun BLAST on NCBI transcript from alignment at sc0001525:2615..11415+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036848 ID=TCONS_00036848|Name=TCONS_00036848|organism=Clytia hemisphaerica|type=transcript|length=8801bp|location=Sequence derived from alignment at sc0001525:2615..11415+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001525:2615..11415+ >TCONS_00036848 ID=TCONS_00036848|Name=TCONS_00036848|organism=Clytia hemisphaerica|type=CDS|length=20493bp|location=Sequence derived from alignment at sc0001525:2615..11415+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00036848 vs. Swiss-Prot (Human)
Match: AGRD1 (Adhesion G-protein coupled receptor D1 OS=Homo sapiens GN=ADGRD1 PE=1 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.617e-52 Identity = 111/313 (35.46%), Postives = 178/313 (56.87%), Query Frame = 2
Query: 1103 GENSWRTDGCLTYLTNTSMVICKCNHMTPFSVLMQVEKYEIPADHRFALSLITYVGCGMSVAACLILILSFMMCGQL--VKVDRNLIHINLAMAIALSNALFIAADSVYKYKYVCLGVSIAMLYTFLSSFFWMLVEGLHVYLMVVKVFKGS-RKMKVYMLIGWMLPAVIVTLAGVKYHEHFTRPNFCWISTEHFLIWIFVGPALFVXXXXXXXXXXXXSASHKMCINEMEFN----KLRRVARLTLLLMPVFGLSWVFGVLAVNKELLIFQYIFTGLNSFQGVFLFVCYCLMNNDVRREYERIRRKSAYSSKS 2020
GE W GC N + +C+C H+T F++LMQV E+ H+ ALS I+YVGC +SV + +++F + + ++ R IH NL+ A+ ++ L + + + C +++ + Y FLS+F WMLVEGLH+Y MV+KVF K + Y +GW P +I ++ + + N CW+S IW FV PALFV+ +N ILIA ++ + + + + A+ +L+P+ G SWVFGVLAVN ++FQY+F LNS QG+F+F+ +CL+N++VR ++ + + +S S
Sbjct: 518 GEGVWSNHGCALTRGNLTYSVCRCTHLTNFAILMQVVPLELARGHQVALSSISYVGCSLSVLCLVATLVTFAVLSSVSTIRNQRYHIHANLSFAVLVAQVLLLISFRLEPGTTPCQVMAVLLHYFFLSAFAWMLVEGLHLYSMVIKVFGSEDSKHRYYYGMGWGFPLLICIISLSFAMDSYGTSNNCWLSLASGAIWAFVAPALFVIVVNIGILIAVTRVISQISADNYKIHGDPSAFKLTAKAVAVLLPILGTSWVFGVLAVNGCAVVFQYMFATLNSLQGLFIFLFHCLLNSEVRAAFKHKTKVWSLTSSS 830 The following BLAST results are available for this feature:
BLAST of TCONS_00036848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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