TCONS_00036844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036844
Unique NameTCONS_00036844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036844 ID=TCONS_00036844|Name=TCONS_00036844|organism=Clytia hemisphaerica|type=transcript|length=1622bp
atctataagaatcactatttataagcatagatcaatgttcttagccaaat
tattatttcattaatattttttctaaacaaagaaaatgtcaccttagagc
gcaatggtttgagttttctaaaaacacttattattttttggctgaaaccg
aatctttatctataagaatcactatttataagcatagatcgaTGTTCTTa
accaaattattatttttattattattattatttctaaaaggagaaaatgt
cacggtagagtgcgatggtttgagttttctgtaaacattatttattaagc
tgtgcatttttcNGTCACGGTAGAgtgcgatggtttgagttttctgtaaa
ccttatttattaagctgtgcatttttctgatagtggattgtttttataaa
gaaaagcgtttaatacctttttttatttctttttcaaaagtatttttcaa
ttgtgttgatagtttctctcaatagatatgctttcattttctttattttt
ttgtattttgaccagttatgtcttatgtatttcattgtttcaatgttctt
tgattagtttgataaccaggtaggtccataaaagtatcacttgttatttt
atagaatTTCATCTCGCGATCATCAAATTTATGGATGAAAATCCAGACAG
ATAATTCAACTGAGGTTATGAACGGTTCCTTACCCTTGCTGGAATATTTG
GAAACTGTTTTCACCAATGTTGCCAAGGAAACAAAAGATAACAAACGATT
CACTTCAGATGGTATAATGGTTGAAGTATCAACGATCAAGCGAGGAGAAT
TTAAAGAATATTCATTCCATGGCATGTCGAAGACGGATAAAAAGGAATGG
AAAGAGAGAGAAGGATTATACTTACCATCAAACTTCTTCCAACAATCCAA
AGATGAAGAATTTTCTATTATGGCAATGGAGTATCAACCACTACCTGTCA
TGAATGCTGCTAGTATGGATGATTTCCAGGTTTCTGATAAAGTATATGCA
ATCAACGTGGATCCGCCATTGAGGGCGCCATTTCAAACGCCATTCGAATA
TGTCATCAACACAAAAGCAcaAAAACTGTATGATGCAAAATGTGTCTATT
GGGGAGAAAAGTAAGTACCGCTACTCTTTGAACACGCTACTCCTTTTGTC
TTTCTGAGCTCTATTCTAGGAGGAAGGGGTCAGATATTTTGACGCTTTTT
CATCTCTGTTTAGCAACGAGTCTGATTCACGGACCTATCTACTTCTTTAA
AAACTTCTGATTAGAAGATACCTTTTTAAATTCTCAACTCTCTTCGTCAA
GTTAAACTTTAATTCAGCTCCTTTGGCTCGATTCTCTTCATCAACTATAA
ATCAGTCCCTTCGTTTTCTCATTAATGttaaaaaatcgataaaatctTGA
TTTCAGTTCTTGGCGTACAGATGGATGCTTGACGTATCTCACCAACACTT
CGATGGTTATTTGTAAATGTAATCATATGACTCCCTTCTCTGTTCTCATG
CAAGTCGAAAAATACGAGATTCCAGCAGATCACCGTTTCGCGTTGAGTTT
GATCACTTATGTTGGTTGTGGGATGTCAGTAGCTGCTTGTCTCATTCTCA
TTCTCTCCTTCATGATGTGTGG
Run BLAST on NCBI

transcript from alignment at sc0001525:2615..8073+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036844 ID=TCONS_00036844|Name=TCONS_00036844|organism=Clytia hemisphaerica|type=transcript|length=5459bp|location=Sequence derived from alignment at sc0001525:2615..8073+ (Clytia hemisphaerica)
atctataagaatcactatttataagcatagatcaatgttcttagccaaat
tattatttcattaatattttttctaaacaaagaaaatgtcaccttagagc
gcaatggtttgagttttctaaaaacacttattattttttggctgaaaccg
aatctttatctataagaatcactatttataagcatagatcgaTGTTCTTa
accaaattattatttttattattattattatttctaaaaggagaaaatgt
cacggtagagtgcgatggtttgagttttctgtaaacattatttattaagc
tgtgcatttttcNGTCACGGTAGAgtgcgatggtttgagttttctgtaaa
ccttatttattaagctgtgcatttttctgatagtggattgtttttataaa
gaaaagcgtttaatacctttttttatttctttttcaaaagtatttttcaa
ttgtgttgatagtttctctcaatagatatgctttcattttctttattttt
ttgtattttgaccagttatgtcttatgtatttcattgtttcaatgttctt
tgattagtttgataaccaggtaggtccataaaagtatcacttgttatttt
atagaatTTCATCTCGCGATCATCAAATTTATGGATGAAAATCCAGACAG
ATAATTCAACTGAGGTAAAAAATGTggataaagaaaaaaacctTATTTGT
TATTATTAAACACAGGAAAATTACCGTAAATTTTTACTATGTAATCTTTT
AATGATCCAcgaaggaaaatattttcattttttcttgtcGAGTCTTTTAA
CCTTTTGCCGACCAGACGCTGATCACAACACTCAACCATAGACAAagatt
tgttaatttcattttgTAGGTTATGAACGGTTCCTTACCCTTGCTGGAAT
ATTTGGAAACTGTTTTCACCAATGTTGCCAAGGAAACAAAAGATAACAAA
CGATTCACTTCAGATGGTATAAGTAAGTCTCGTATTTTttaagtacactt
ttttttcaaatgaagaAACTATACCTGCTAGCGCTTTTACTATCGAGGAG
CAAAGTCTTAATGAAAACTTTCACTGCAGATGTATCAAACTCATTGATAG
CCCCGCGAGTatgggcactcaaggtaaacgacctaccgcACGTGCGGCTC
TTAAGGgcgaaaaattgatttaagtaTTTGAACGTAAAAGCTATGTTTTA
GGTTATTTAAGACTTTTAACAAAGatttgcctttataaattgctttctaa
tcaaaccccttaagagtaactaagaatttaattgcaaaaatgacgttatg
aactttaataatatagacgttaataatatgttgcatcacttTCTTCTATA
AAAAGtactaagttttaatgggtaattaacctttttgtttcgaagttttt
tcaaactgtccgcaaagaattgaactgttttaaatgtttcggaaaaactt
tctaaattaatgcatcaaaagttatggctgtttttctatggaaaattggg
atggaaaattggtcgaaaagcactattttcaagattttgaagcaaataaa
cttttagaaaaattttccgtaAAAATAgttttagttcgataaaagataca
ccatctaccgcaaaaatattttcaaaattttttttcttcgccgaaaataa
gctcttcaaagttgaaatactcttctttgcgaaagtcttcattttcttct
tcatcaattttttcaatgcgattcttaaattttcagactcacggataatt
ggcctaacagaaaatgtataacatgccacagttttgtgtgctacatcaag
tagaactttatattttgtaagtggcaaatattaaaaattcactatggtca
gagcccttaagggtcCTTTTTTCCAAGTtaccaaagtgcactgtaagggt
cgaaatgagcaaagatgaaaaaatcCACTCTAGAatgtaaaatttggaaa
cacTGACCATGATTTGCCTTAGTTAAAATGgtcaaagtttttcaagaaaa
agcaCCGAAAGGGTCGATGTTTTGCCCAAATTTCGCTGAGCTTTCTCTGC
GcttaagggtccgatttcaaaggcctagtTTTGAGCcgcacgtacggtcg
tttttgaatcgaatgCCCTCCTGTCAGATGATAGTCACTGcaaattttat
tattaaatGGTATTAAATGGTATCTCTGTAATTGCGTTCAGTGGTTGAAG
TATCAACGATCAAGCGAGGAGAATTTAAAGAATATTCATTCCATGGCATG
TCGAAGACGGATAAAAAGGAATGGAAAGAGAGAGAAGGATTATACTTACC
ATCAAACTTCTTCCAACAATCCAAAGATGAAGAATTTTCTATTATGGCAA
TGGAGTATCAACCACTACCTGTCATGAATGCTGCTAGGTTTGCCATCTTT
GTTGTGTTCAATCTCCTATGGTTACCAGTTTCCAGTCCCATCTCTTGTTC
TTGCGGTCTGTAGTCTTTGGTCCCTAAAACCCTTAGAGATTCTTTACAAT
GTGTCTTCGCCTTGACTCTTCTAAgcttttttttctcgatattttTTTAG
TATGGATGATTTCCAGGTTTCTGATAAAGTATATGCAATCAACGTGGATC
CGCCATTGAGGGCGCCATTTCAAACGCCATTCGAATATGTCATCAACACA
AAAGCAGTAAGTGCGCACTCTAGAAAGTATTTTCTCTATTCGTACAAGAG
CcttgaaatatagaaaaaactaaaaatgaaccTATCTTGTAAGATTCAAG
TAAttcaatcgtttttttttttgcagcaAAAACTGTATGATGCAAAATGT
GTCTATTGGGGAGAAAAGTAAGTACCGCTACTCTTTGAACACGCTACTCC
TTTTGTCTTTCTGAGCTCTATTCTAGGAGGAAGGGGTCAGATATTTTGAC
GCTTTTTCATCTCTGTTTAGCAACGAGTCTGATTCACGGACCTATCTACT
TCTTTAAAAACTTCTGATTAGAAGATACCTTTTTAAATTCTCAACTCTCT
TCGTCAAGTTAAACTTTAATTCAGCTCCTTTGGCTCGATTCTCTTCATCA
ACTATAAATCAGTCCCTTCGTTTTCTCATTAATGttaaaaaatcgataaa
atctTGATTTCAGTTCTTGGCGTACAGATGGATGCTTGACGTATCTCACC
AACACTTCGATGGTTATTTGTAAATGTAATCATATGACTCCCTTCTCTGT
TCTCATGCAAGTCGAAAAATACGAGGTTTGTTacatttcactttcacttt
cgtaaCCTACAGCCCAATTTTTTATCGAAATCATAACGAATAATAGCTCA
CTTCGAAAGGTGACGTAATAACAGAACTCATAAAATGGGTGCATATTCTG
CATGTTTCTACTTGAAAGAAGCCTGACCAATGAGattgtagtctgaatcg
cagacctccacaggtatacttcctataagaaacttttttcgctagaggat
gagcagaagtcTAATGAGATTCgcaaatcttcatttttactAAATCTAAT
GAAGAATAATGCTTTCATCCGCTGTTCAAAATTTCCTCTGTAAATACTGC
TAGACTCATTCCAATGACTGAGAAAGCCTATCAACTTCCTCTTCACTTTA
GATTCCAGCAGATCACCGTTTCGCGTTGAGTTTGATCACTTATGTTGGTT
GTGGGATGTCAGTAGCTGCTTGTCTCATTCTCATTCTCTCCTTCATGATG
TGTGGGTAAGCAAAGAAGACCAAACACGTTTATATCTGTCTCCAGAACTT
TTACTGTTAcagtaaaaaagtcaaaaaattttgttttggtcATTCAATCC
ACTCAATGGGAATGGAAtaacttatttttttcatttgactgCAATTTTTT
AACTGCCTGGATATCAAGGCAACTTACTTTTTACTGTAAATTCAACCAAA
ACGTCATAGTGAATTTTTACGACTTTTTTGTGTCTAATCTAACAATTATG
TATAAATTTATATCTTCAAACTAGATAAAAACAAGCTATGCTATACTCGA
CAAAATCTCTTCCACAACGTAGCAATACCCATAAAAAGGCTTGAACAATG
CCAAGAGTCAAAATTTAAACATAGTgaaccatttttctttttgcaggCAA
TTGGTCAAAGTGGATCGCAACCTAATTCACATAAATTTGGCAACAGCCAT
TGCACTTTCTAATGCTCTCTTCATTGCTGCTGATTCAGTCTATAAATACA
AGGTACAGTCATAAAATCATTTAGTGGGACACTTAGTGTACAAAGGTTct
ccgtctcagacggatttctgTCTCAGCGAGGTTCAAAAAGAGGCTTTTCC
ATCTCCAAATTGGACAAAATTCTGCAAGATTTGAAGACCTTGTCGtttct
gtttgaaaaaaaaatgcctTGGACACACTGGGCACTAAAAAATCGATTAA
ATATCATCCCGATGAAAGAAGTACTATAAAAGTTCATACCCATTGAGAAC
TACACTTTACCTTGTTACCCACTGGAAATACCACTAAAACTTTAAGAATC
CCCAcctattgaaattttttttatccccAGCGTCCCATCGCTGTTTAGCT
CATCACTTAATTCCTAATGGCTAAATTAATTGTTATCGGATCACTGATAT
AGTCAGTAAAGATGATTATTTACACTTGAGGTACTTTAAAGACTGACTGA
CAGTACAGTGCTACGTAATAAAACTTTAAACTGCtttcaaatttatattt
ctAGNCTTTAAAAACTTCTGATTAGAAGATACCTTTTTAAATTCTCAACT
CTCTTCGTCAAGTTAAACTTTAATTCAGCTCCTTTGGCTCCATTCTCTTC
ATCAACTATAAATCAGTCCCTTCGTTTTCTCATTAATGttaaaaaatcga
taaaatctTGATTTCAGTTCTTGGCGTACAGATGGATGCTTGACGTATCT
CACCAACACTTCGATGGTTATTTGTAAATGTAATCATATGACTCCCTTCT
CTGTTCTCATGCAAGTCGAAAAATACGAGGTTTGTTacatttcactttca
ctttcgtaaCCTACAGCCCAATTTTTTATCGAAATCATAACGAATAATAG
CTCACTTCGAAAGGTGACGTAATAACAGAACTCATAAAATGGGTTCATAT
TCTGCATGTTTCTACTTGAAAGAAGCCTGACCAATGAGattgtagtctga
atcgcagacctccacaggtatacttcctataagaaacttttttcgctaga
ggatgagcagaagtcTAATGAGATTCgcaaatcttcatttttactAAATC
TAATGAAGAATAATGCTTTCATCCGCTGTTCAAAATTTCCTCTGTAAATA
CTGCTAGACTCATTCCAATGACTGAGAAAGCCTATCAACTTCCTCTTCAC
TTTAGATTCCAGCAGATCACCGTTTCGCGTTGAGTTTGATCACTTATGTT
GGTTGTGGGATGTCAGTAGCTGCTTGTCTCATTCTCATTCTCTCCTTCAT
GATGTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021768XLOC_021768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036844-exon-sc0001525-1491911889:2615..3278TCONS_00036844-exon-sc0001525-1491911889:2615..3278Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1510915933:2615..3278TCONS_00036844-exon-sc0001525-1510915933:2615..3278Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1575043694:2615..3278TCONS_00036844-exon-sc0001525-1575043694:2615..3278Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1491911889:3484..3586TCONS_00036844-exon-sc0001525-1491911889:3484..3586Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1510915933:3484..3586TCONS_00036844-exon-sc0001525-1510915933:3484..3586Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1575043694:3484..3586TCONS_00036844-exon-sc0001525-1575043694:3484..3586Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1491911889:4806..5001TCONS_00036844-exon-sc0001525-1491911889:4806..5001Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1510915933:4806..5001TCONS_00036844-exon-sc0001525-1510915933:4806..5001Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1575043694:4806..5001TCONS_00036844-exon-sc0001525-1575043694:4806..5001Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1491911889:5165..5270TCONS_00036844-exon-sc0001525-1491911889:5165..5270Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1510915933:5165..5270TCONS_00036844-exon-sc0001525-1510915933:5165..5270Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1575043694:5165..5270TCONS_00036844-exon-sc0001525-1575043694:5165..5270Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1491911889:5391..5839TCONS_00036844-exon-sc0001525-1491911889:5391..5839Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1510915933:5391..5839TCONS_00036844-exon-sc0001525-1510915933:5391..5839Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1575043694:5391..5839TCONS_00036844-exon-sc0001525-1575043694:5391..5839Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1491911889:7970..8073TCONS_00036844-exon-sc0001525-1491911889:7970..8073Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1510915933:7970..8073TCONS_00036844-exon-sc0001525-1510915933:7970..8073Clytia hemisphaericaexon
TCONS_00036844-exon-sc0001525-1575043694:7970..8073TCONS_00036844-exon-sc0001525-1575043694:7970..8073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001525supercontigsc0001525:2615..8073 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.686445	0.383942	0.952126	0.739435	1.29517	0.431035	0.284379	0.595143	0.179195	0.437418	0.21532	0.423731	0.815475	0.812008	0.439407	0.554601	0.06238	0	0.146031	0.501246	0.509857	0.43209	0.546319	0.52583	0.237652	0.335592	0.392371	0.178133	0.660442	0.843926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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