TCONS_00036825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036825
Unique NameTCONS_00036825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036825 ID=TCONS_00036825|Name=TCONS_00036825|organism=Clytia hemisphaerica|type=transcript|length=2638bp
TGTAAATCGAGTTTCAATGCAAAGCAAAGTCAATAATAAATTTGCttaat
tttgaaatgtaaaTGCAGAGGTATTTGAGTGAGAATGTTTATAAATTTCT
ATCATCACTCTGGGAAAGTAGCTAAGAAAACCCAGGACTCCAAGGATTAA
AAGTTAATTCTCTTTATAGGGCACGTGAAAGCAGAACTAAAGAGAAGAGC
AAGGCTAAAGGCAAGCCAGAGAAATCTAGAAGAAAAAGGTCGCCAAGTCC
CAAGCGAAAATCAAAATCCACAAAGGAAAGAGGAAGAGATAAAAGAAAGA
GAAGACCTTCTACATCGAGCAGTGGTTCTTCCTCAAGTTCAAGATCTGGT
TCAAGTTCTTCAAGTGATTCTTCAAGCGGATCAAGCAGAAGTTCATCTTA
CTCATCAAGTTCAGGGAGCTCATCAAGTTCCAGTTCGTCTAGTGATAGTG
GTAGAGACAACCGTAAACGTGGCAAGAAGGTGGTGAAGAAACCAGCCAAA
GGAGCCGGAGGACGTCGAGCATCTGAGAAGGAGAAGGAAGTTAAACCGAA
GCAGGagaaagaaaatacaaaaccTTCTAAGAAACAACAAGATGATGAAC
CGGAAGACACCAAAAAGAAACAGGACGAAGCGAAAGCGAAAGAAGACaat
ttgaaattgttgaaaCAACGTCAAGAAGCATTGCGAAATCGTAAATCTGA
ATCAGAGGATGAAAAAGAGAACCCTAACGAGTCGCTCAACAAAAGTAtgg
aaattgaagaaaaaacaaaactcaAGCAATCTCTCGAGAAACCTAAAGCA
AAATCGCCACCAAGAGAAAACAAACGACCACCCGTCACAAGACGCGCTTC
TTTGTCCGGCAGTAGTCGAAGTCGTTCACCTCAGCAACGACGTCGCAAAT
CTCCGTCTCCCGTACGCAAACGTCGCGTTTCCAGATCACCTCCACGAAGA
AGCCCCATTCGACGTGCTTCCAGGAGTCCTGTTCGTAGAATTTCTCGCAG
CCCAGTTCGTAGAGTATCACGCAGCCCCGTCCGTAGAATATCACGAAGTC
CACTTCGAAGAAGTAGAAGCCCCAAAAGATCGCCCGTTCGTCGAACGATA
ACAAACCGTCGAAAATTATCATCTTCGCCCGAACGTGCTCGCTCAGCTTC
ACCTGCCAATACGAAATCAAAACGCCTAGCTCTAAAAAATTTGTCAAGGA
ACATAAACAAAGAtcatattttagaaatttttagtGTTTACGGGCGTATT
CGCTCCATAGACTTGCCATTAGATGCGCAATTATATTTACCGCGAGGACA
CGCTTGGGTCGAATTCGACCGTGCGGAGGATGCAAAGGATGCTTGTTTAC
ACATGAACGGCGGTTGGATTGATGGTCAGGAAATATCAGCGAAAGAGGTT
CTAACACTCGAAACTGCAAGTGGTCTCGCAAGTGCACGTAAACGACAACC
GGCANACACTCGAAACTGCAAGTGGTCTCGCAAGTGCACGTAAACGGCAA
CCGGCTCCTGTCAACCAATCGCGACCCCGCGGTGGTCCGGCTCCAGGACG
CCGCCGTTCTCCACCAGGCCGATTTAACACAAGACGTTATTCGCCTCCCG
CACGACGATCGCGAAGTCCCGTTCGACGTCGTTCTCGCTCACGCTCTCCT
CCACGCCACAATCGTAGGAATCGTAGAGGTTCAGTTTCAAGTGGTTCGGA
CTCTTCGCCTCCAAGAAGGAGAGCATCACCACCGAATCGTAGACGCAGAT
ACAGTAATTCCACATCTGACTCGGATTGAGTTTATCTACTTAATATTTTC
ATTCCAGAATTAATGAGACATTCATATTTGGTTCTTTGACATCGAATCTT
ATGATCCCGCTCTTACTTTTTGAATAGAATGGTTTCTTATCTGTCTTCAT
CCAAGTCTTCATACAAACTTAAACAATCAGCAAtaattttgggatttttc
attttcattttgagaaTGTTTTAATGGAAATATCTTTAGCGTAAGCTGAT
CTTATTTTTTATGtgattaattttgattttgatttgtaCAAATAAAGAAA
TTTCCCCCTTAGCAGTAATATAGGGAAGTGTTTTATAAAACAAAGATTCC
ACCcaaaagaaactacaatttttatACATCATAAAACTATGCGAAACAAG
CcagggggtcagtactaaaatccCAGACATATATATGAGTCCTAAAAGGG
TTTCGAGAGTTTTCTGCGTACCACCACCCCGTTTTAGAGAAAGTGATTTT
TTAGTGCCCATGTACTGAAATTTTTGGGGGACATTTTGGCACAGAGACCA
CCCAATTTTGGTCCTCTCTTCTCAGGACATTTTATCTTCTCGAgaccatt
tttctcaaaagtgaTGATTTTTGCAACAtattaatttttgcaaaaattga
tacttttaaacaaaatgcaaacacttttaacaaagaattgcctttataaa
ttgctttttaattatatccctcaagagtaattaagaatgtAATTACAAaa
ttgacgttatgaactttaagaagacgttaataatatgttgtaccaaggaa
ttattatagacactggaaaaacaactagctgatttttgccaatttctcat
gtacaagccttgtccgcagtaatgacattattgttcac
Run BLAST on NCBI

protein sequence of TCONS_00036825-protein

>TCONS_00036825-protein ID=TCONS_00036825-protein|Name=TCONS_00036825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MEIEEKTKLKQSLEKPKAKSPPRENKRPPVTRRASLSGSSRSRSPQQRRR
KSPSPVRKRRVSRSPPRRSPIRRASRSPVRRISRSPVRRVSRSPVRRISR
SPLRRSRSPKRSPVRRTITNRRKLSSSPERARSASPANTKSKRLALKNLS
RNINKDHILEIFSVYGRIRSIDLPLDAQLYLPRGHAWVEFDRAEDAKDAC
LHMNGGWIDGQEISAKEVLTLETASGLASARKRQPAXTRNCKWSRKCT
Run BLAST on NCBI

transcript from alignment at sc0001520:39424..46618-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036825 ID=TCONS_00036825|Name=TCONS_00036825|organism=Clytia hemisphaerica|type=transcript|length=7195bp|location=Sequence derived from alignment at sc0001520:39424..46618- (Clytia hemisphaerica)
TGTAAATCGAGTTTCAATGCAAAGCAAAGTCAATAATAAATTTGCTTAAT
TTTGAAATGTAAATGCAGAGGTATTTGAGTGAGAATGTTTATAAATTTCT
ATCATCACTCTGGGAAAGTAGCTAAGAAAACCCAGGACTCCAAGGATTAA
AAGTTAATTCTCTTTATAGGGCACGTGAAAGCAGAACTAAAGAGAAGAGC
AAGGCTAAAGGCAAGCCAGAGAAATCTAGAAGAAAAAGGTCGCCAAGTCC
CAAGCGAAAATCAAAATCCACAAAGGAAAGAGGAAGAGATAAAAGAAAGA
GAAGACCTTCTACATCGAGCAGGTAAATAATAAGAAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACT
TCTCTCGGGTTCTAGAAATTTTTTACAAACGAAATCCTTTGAATTGGAAA
AAGGGAAGATTAACTTAAATTTAGACGGGTCATTTATCAAATTTGGTTCA
GTGCATCAAAAGTTATATTGAAATGAATAAAAATTGACTTTCAAAAAGTG
CTTAAAAACGTCTAAATTGGACCTATCAAATTAATAAAAAGTAAAGATAC
ATTCGAAACCTTTTAAAGTAATTAAAACAATTATTGATTGTTGAAATTAC
TTTTTGATGGAGAAAAACGGTGCTAAACTGTAAATTTTCTAAGAAAACTT
TCTTAAAATTTCAAAAATTTGAATAAAACTCGTGAAGAATCAACATAACT
GGTTTTTCTAACAAAATCAGTGCTTTTCCAGGTCTGCAGCCAAAAATCGA
GGTAAATTATGGTAAAAAAAAAAAATATAAAACAGAAGAATAGATTAGTT
TGCCTCTTTTGTGAATATTTTCTAGGTTTTATGCTTTAAACTCCAACAAA
ACAATCATTATAATGCAAAAGATCATTGTAGCCTCTTATTTTTTTCTAAA
AATATAATAGGTCCAATTTGGACGTTTTTGAGCACATTTTGAAAGTAAAC
CAACTGAACCAAGTTTGATAAATGACCCATCAAAATTTAAGTTAATCTTC
CTTTTTTCCAATGCAAATAATTTCGTTTTTCAAAAATTTATAGAATTCTA
GAAAAGTCACTTCAAAGACTGAAACTTTTTTGTGGCGTACCTAAAATTCA
GGGGGTACCTATTTTCTTAGTGGGCACTTAAACCCCTGGGCCATGCCATG
GAAAGTTTGTTCTTCTAAAAGTAAATCTCATATCTAAAAATGATCAGTCA
AGCTTAACAGATTTTGCAAAGAGGCTGAGTTGAATCAGCATGACTGAATA
TTCTTTCCCTTTTAAAAAAACTTGTCATTTTCGAACTTCTCTTTCAATTT
TTATTTTAATTTTCCCTTTAGCTCTTTTGTTATGAAAAATGTACTGAACT
TATTGGGAATCTGGAGACTTTATACAATAACATTTTATAGATGTTGATGT
ACACAATATTGTTCAATTTAAAATCTTTTTTGAAGCTCTGTGTAGCTTGT
ACAAGTTTCTCAATTGTTTCATATTGATATTACTCTTTATAACAAGCCAC
CTGACCATTGCATTGGCATTGAAAAGTGTTGGCTGTTTTGGAAAATTTTT
CCTCGATCTTAGACCTTTTTCCTGTAACACATTATTTTTTTACTGCCTTA
CTATACTTTATTATAAATCAATAAAGACTCGTTTGAGTTTTTGTCTCGTT
ATTATTTTTCAGTGGTTCTTCCTCAAGTTCAAGATCTGGTTCAAGTTCTT
CAAGTGATTCTTCAAGCGGATCAAGCAGAAGTTCATCTTACTCATCAAGT
TCAGGGAGCTCATCAAGTTCCAGTTCGTCTAGTGATAGTGGTAGAGGTAT
GACGCTTTCTTATATTTAACTATTCTAAATTATCAGATTTTTCTCGTTTT
GTATTTTCAGGTTTTACCAATAAATGTTCTTATTCTAGCATTTTGTTAGA
ATAACGGTATAATATACAGTTTCAGATGTTCCCTCTAGAAATTCCCAAAT
CGCAATCGAGAAGTAAATATATGTCTTTGGAGGTGGTAAATTAACCCATG
ACATGTGTCCATTTGTTTGTTTGTTCATCATTACTAGTTTTCTCGGGATT
GGCTCATTAGTCTTTTTATGATTTTTTGCACAATGCAAAATGACAATACC
CAAAGTGTGATTGAGCCTGACTTTCGAAAAAATATTTTTCGGGCAAATTT
GCGTCAGAAAGTGCCTAAAAAAGGGTTAAGACTGAGTGAATTCACGTGAA
ATTGCTGCATTAGTTTTTATCTGATGTTTTTTACATAAAAATTGGAGGGA
AAGGCTGTCTAAAAAGTGCCTGGAGTCGTTTTCGTAGGAACTTAAAAAAA
ATAGATCTGATCTATTTTGTTGCAGCCTCCTGCAATTTTTTTGCAATGTT
TTTTTGCGTTTTTATTGCGTTGCAGAAAAGATTGCAGAGAATTTGACCTG
GCTATGCTCATTTTCTTTTCGAGCGCTTGCAACATAATCTAGATTGCTCA
GTGTAGCCTTAGCTTTACATTTGAAATGCTCTTTTCTATAAAAGGAATTT
GTTTTGTTTTGAACTGTTTTGAAAGGAATTCGAATGTCATTAATAAATAC
GATCATTAAATAACAGGGTCAGGCAAGTCTGGGCAGAAATTGAAATTACT
AAATGTAGATGGGCCTTAAATTTCAAAACAAAGGCTGAATAAAGTCTAAA
CCTGGCTCTATCCGATCTGTCAATCAAAACAAACTTATCGATAATAAAAA
CATTGCTTGCGAAAACGAAAGCGACACACATAAAACAGACAGAAAACAAA
CAGACATACAGACTACGGCTATTAATATATAANTGTCCATTTGTTTGTTT
GTTCATCATTACTAGTTTTCTCGGGATTGGCTCATTAGTCTTTTTATGAT
TTTTTGCACAATGCAAAATGACAATTCCCAAGTGTGATTGAGCCTGACTT
TGCGAATTTGCGTCAGAAAGTGCCTAAAAAAGGGTTAAGACTTAGTGAAT
TCACGTGAAATTGCTGCATTAGTTTTTATCTGATGTTTTTTGCATAAAAA
TTGGAGGGAAAGGCTGTCTAAAAAGTGCCTGGAGCTGCCTGGAGTCGTTT
TCGTAGGAACTTAAAAAAAATAGATCTCATCTATTTTGTTGCAGCCTCCT
GCAATTTTTTTGCAATGTTTTTTTGCGTTTTTATTGCGTTGCAGAAAAGA
TTGCAGAGAATTTGACCTGGCTATGCTCATTTTCTTTTCGAGCGCTTGCA
ACATAATCTAGATTGCTCAGTGTAGCCTTAGCTTTACATTTGAAATGCTC
TTTTCTATAAAAGGAATTTGTTTTGTTTTGAACTGTTTTGAAAGGAATTC
GAATGTCATTAATAAATACGATCATTAAATAACAGGGTCAGGCAAGTCTG
GGCAGAAATTGAAATTACTAAATGTAGATGGGCCTTAAATTTCAAAACAA
AGGCTGAATAAAGTCTAAACCTGGCTCTATCCGATCTGTCAATCAAAACA
AACTTATCGAGAATAAAAACATTGCTTGCGAAAACGAAAGCGACACACAT
AAAACAGACAGAAAACAAACAGACATACAGACTACGGCTATTAATATATA
GATGATTGTTTTGTGTTTTAGACAACCGTAAACGTGGCAAGAAGGTGGTG
AAGAAACCAGCCAAAGGAGCCGGAGGACGTCGAGCATCTGAGAAGGAGAA
GGAAGTTAAACCGAAGCAGGAGAAAGAAAATACAAAACCTTCTAAGAAAC
AACAAGATGATGAACCGGAAGACACCAAAAAGAAACAGGTATGTCGTATT
CCATGCAGGGGAAGCTACTATCATTGGCAAAGCTCTGGCTCTTCTGTCTG
TAGACAGTAATTCATCTAGCTGAGAAATCTAGTTTTATATAATCTGATTA
TAAAGCAGGTTGCATAAAGAGCAACTTCTTGGAGGTTTTATCATTTCTTT
GTTCTTCTCTCCCAGGACGAAGCGAAAGCGAAAGAAGACAATTTGAAATT
GTTGAAACAACGTCAAGAAGCAGTAAGATGTGAATTATTTTTGTTTGAAT
TATCGTTCGTATCGACTACCGTATTCTAGATTCTATAGAAACAATATAAA
TATTTGTTTAAAAGAACTCATCTCCTCAAGAAACTTGAAGTGCTAAAATG
GTACGACCAACGGAAACTCGTTTCTTTACTAATATATCAAGCCCTTGCAA
TGATTTTTCTAACCTAACCGTTCGCCCATCCAGCTTTTCTCGAGATTAGT
TACCCATTAGTTTCTTCTAATTTTGACACAGAATGCCAAATAGCAAATGT
GTAAAATGTGGTAGAGCCTGATCGTCAACATGACGGAAAACCGGTTTTGA
CATTTCTCAAGATTTTATCGTTCCAATTTTTTGCACAAAGATGTGATCGA
GTCCGATTGAAACTTATTAAAAACTTGAGTTAAATTGTCTAACCGATAAT
AACTGGTAAACCTGATTCCTCTTTCTTTACCTCCCAGTTGCGAAATCGTA
AATCTGAATCAGAGGATGAAAAAGAGAACCCTAACGAGTCGCTCAACAAA
AGTATGGAAATTGAAGAAAAAACAAAACTCAAGCAATCTCTCGAGAAACC
TAAAGCAAAATCGCCACCAAGAGAAAACAAACGACCACCCGTCACAAGAC
GCGCTTCTTTGTCCGGCAGTAGTCGAAGTCGTTCACCTCAGCAACGACGT
CGCAAATCTCCGTCTCCCGTACGCAAACGTCGCGTTTCCAGATCACCTCC
ACGAAGAAGCCCCATTCGACGTGCTTCCAGGAGTCCTGTTCGTAGAATTT
CTCGCAGCCCAGTTCGTAGAGTATCACGCAGCCCCGTCCGTAGAATATCA
CGAAGTCCACTTCGAAGAAGTAGAAGCCCCAAAAGATCGCCCGTTCGTCG
AACGATAACAAACCGTCGAAAATTATCATCTTCGCCCGAACGTGCTCGCT
CAGCTTCACCTGCCAATACGAAATCAAAACGCCTAGCTCTAAAAAATTTG
TCAAGGAACATAAACAAAGATCATATTTTAGAAATTTTTAGTGTTTACGG
GCGTATTCGCTCCATAGACTTGCCATTAGATGCGCAATTATATTTACCGC
GAGGACACGCTTGGGTCGAATTCGACCGTGCGGAGGATGCAAAGGATGCT
TGTTTACACATGAACGGCGGTTGGATTGATGGTCAGGAAATATCAGCGAA
AGAGGTTCTAACACTCGAAACTGCAAGTGGTCTCGCAAGTGCACGTAAAC
GACAACCGGCANACACTCGAAACTGCAAGTGGTCTCGCAAGTGCACGTAA
ACGGCAACCGGCTCCTGTCAACCAATCGCGACCCCGCGGTGGTCCGGCTC
CAGGACGCCGCCGTTCTCCACCAGGCCGATTTAACACAAGACGTTATTCG
CCTCCCGCACGACGATCGCGAAGTCCCGTTCGACGTCGTTCTCGCTCACG
CTCTCCTCCACGCCACAATCGTAGGAATCGTAGAGGTTCAGTTTCAAGTG
GTTCGGACTCTTCGCCTCCAAGAAGGAGAGCATCACCACCGAATCGTAGA
CGCAGATACAGTAATTCCACATCTGACTCGGATTGAGTTTATCTACTTAA
TATTTTCATTCCAGAATTAATGAGACATTCATATTTGGTTCTTTGACATC
GAATCTTATGATCCCGCTCTTACTTTTTGAATAGAATGGTTTCTTATCTG
TCTTCATCCAAGTCTTCATACAAACTTAAACAATCAGCAATAATTTTGGG
ATTTTTCATTTTCATTTTGAGAATGTTTTAATGGAAATATCTTTAGCGTA
AGCTGATCTTATTTTTTATGTGATTAATTTTGATTTTGATTTGTACAAAT
AAAGAAATTTCCCCCTTAGCAGTAATATAGGGAAGTGTTTTATAAAACAA
AGATTCCACCCAAAAGAAACTACAATTTTTATACATCATAAAACTATGCG
AAACAAGCCAGGGGGTCAGTACTAAAATCCCAGACATATATATGAGTCCT
AAAAGGGTTTCGAGAGTTTTCTGCGTACCACCACCCCGTTTTAGAGAAAG
TGATTTTTTAGTGCCCATGTACTGAAATTTTTGGGGGACATTTTGGCACA
GAGACCACCCAATTTTGGTCCTCTCTTCTCAGGACATTTTATCTTCTCGA
GACCATTTTTCTCAAAAGTGATGATTTTTGCAACATATTAATTTTTGCAA
AAATTGATACTTTTAAACAAAATGCAAACACTTTTAACAAAGAATTGCCT
TTATAAATTGCTTTTTAATTATATCCCTCAAGAGTAATTAAGAATGTAAT
TACAAAATTGACGTTATGAACTTTAAGAAGACGTTAATAATATGTTGTAC
CAAGGAATTATTATAGACACTGGAAAAACAACTAGCTGATTTTTGCCAAT
TTCTCATGTACAAGCCTTGTCCGCAGTAATGACATTATTGTTCAC

Coding sequence (CDS) from alignment at sc0001520:39424..46618-

>TCONS_00036825 ID=TCONS_00036825|Name=TCONS_00036825|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0001520:39424..46618- (Clytia hemisphaerica)
ATGGAAATTGAAGAAAAAACAAAACTCAAGCAATCTCTCGAGAAACCTAA
AGCAAAATCGCCACCAAGAGAAAACAAACGACCACCCGTCACAAGACGCG
CTTCTTTGTCCGGCAGTAGTCGAAGTCGTTCACCTCAGCAACGACGTCGC
AAATCTCCGTCTCCCGTACGCAAACGTCGCGTTTCCAGATCACCTCCACG
AAGAAGCCCCATTCGACGTGCTTCCAGGAGTCCTGTTCGTAGAATTTCTC
GCAGCCCAGTTCGTAGAGTATCACGCAGCCCCGTCCGTAGAATATCACGA
AGTCCACTTCGAAGAAGTAGAAGCCCCAAAAGATCGCCCGTTCGTCGAAC
GATAACAAACCGTCGAAAATTATCATCTTCGCCCGAACGTGCTCGCTCAG
CTTCACCTGCCAATACGAAATCAAAACGCCTAGCTCTAAAAAATTTGTCA
AGGAACATAAACAAAGATCATATTTTAGAAATTTTTAGTGTTTACGGGCG
TATTCGCTCCATAGACTTGCCATTAGATGCGCAATTATATTTACCGCGAG
GACACGCTTGGGTCGAATTCGACCGTGCGGAGGATGCAAAGGATGCTTGT
TTACACATGAACGGCGGTTGGATTGATGGTCAGGAAATATCAGCGAAAGA
GGTTCTAACACTCGAAACTGCAAGTGGTCTCGCAAGTGCACGTAAACGAC
AACCGGCANACACTCGAAACTGCAAGTGGTCTCGCAAGTGCACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021752XLOC_021752Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036825-exon-sc0001520-1575043694:46297..46618TCONS_00036825-exon-sc0001520-1575043694:46297..46618Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1575043694:44023..44156TCONS_00036825-exon-sc0001520-1575043694:44023..44156Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1575043694:42081..42247TCONS_00036825-exon-sc0001520-1575043694:42081..42247Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1575043694:41847..41903TCONS_00036825-exon-sc0001520-1575043694:41847..41903Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1575043694:39424..41381TCONS_00036825-exon-sc0001520-1575043694:39424..41381Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1510915933:46297..46618TCONS_00036825-exon-sc0001520-1510915933:46297..46618Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1510915933:44023..44156TCONS_00036825-exon-sc0001520-1510915933:44023..44156Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1510915933:42081..42247TCONS_00036825-exon-sc0001520-1510915933:42081..42247Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1510915933:41847..41903TCONS_00036825-exon-sc0001520-1510915933:41847..41903Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1510915933:39424..41381TCONS_00036825-exon-sc0001520-1510915933:39424..41381Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1491911889:46297..46618TCONS_00036825-exon-sc0001520-1491911889:46297..46618Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1491911889:44023..44156TCONS_00036825-exon-sc0001520-1491911889:44023..44156Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1491911889:42081..42247TCONS_00036825-exon-sc0001520-1491911889:42081..42247Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1491911889:41847..41903TCONS_00036825-exon-sc0001520-1491911889:41847..41903Clytia hemisphaericaexon
TCONS_00036825-exon-sc0001520-1491911889:39424..41381TCONS_00036825-exon-sc0001520-1491911889:39424..41381Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036825-proteinTCONS_00036825-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001520supercontigsc0001520:39424..46618 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
102.934	92.6617	212.501	227.773	298.659	241.416	165.943	183.077	89.6231	124.807	81.4457	64.5641	59.801	66.3962	69.4886	88.4304	119.722	91.2074	23.4862	33.2516	50.0691	52.4142	87.5351	76.3445	98.817	97.65	37.0727	26.6046	72.4184	77.8525
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034201RNPS1_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00036825 vs. Swiss-Prot (Human)
Match: RNPS1 (RNA-binding protein with serine-rich domain 1 OS=Homo sapiens GN=RNPS1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.100e-20
Identity = 39/81 (48.15%), Postives = 60/81 (74.07%), Query Frame = 3 
Query: 1164 KSKRLALKNLSRNINKDHILEIFSVYGRIRSIDLPLD-AQLYLPRGHAWVEFDRAEDAKDACLHMNGGWIDGQEISAKEVL 1403
            K  ++ +  L+RN+ KDHI+EIFS YG+I+ ID+P++    +L +G+A+VEF+  ++A+ A  HM+GG IDGQEI+A  VL
Sbjct:  159 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 239
The following BLAST results are available for this feature:
BLAST of TCONS_00036825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNPS17.100e-2048.15RNA-binding protein with serine-rich domain 1 OS=H... [more]
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