TCONS_00036825-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036825-protein
Unique NameTCONS_00036825-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036825-protein ID=TCONS_00036825-protein|Name=TCONS_00036825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MEIEEKTKLKQSLEKPKAKSPPRENKRPPVTRRASLSGSSRSRSPQQRRR
KSPSPVRKRRVSRSPPRRSPIRRASRSPVRRISRSPVRRVSRSPVRRISR
SPLRRSRSPKRSPVRRTITNRRKLSSSPERARSASPANTKSKRLALKNLS
RNINKDHILEIFSVYGRIRSIDLPLDAQLYLPRGHAWVEFDRAEDAKDAC
LHMNGGWIDGQEISAKEVLTLETASGLASARKRQPAXTRNCKWSRKCT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021752XLOC_021752Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036825TCONS_00036825Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034201RNPS1_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 143..216
e-value: 1.1E-14
score: 64.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 146..213
e-value: 3.7E-13
score: 49.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 142..220
score: 13.464
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 135..219
NoneNo IPR availableGENE3D3.30.70.330coord: 120..223
e-value: 1.2E-18
score: 66.5
IPR034201RNPS1, RNA recognition motifCDDcd12365RRM_RNPS1coord: 148..216
e-value: 5.66071E-33
score: 115.345

Blast
[Close]
BLAST of TCONS_00036825-protein vs. Swiss-Prot (Human)
Match: RNPS1 (RNA-binding protein with serine-rich domain 1 OS=Homo sapiens GN=RNPS1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.151e-23
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 0 
Query:  132 RSASPANTKSKRLALKNLSRNINKDHILEIFSVYGRIRSIDLPLD-AQLYLPRGHAWVEFDRAEDAKDACLHMNGGWIDGQEISAKEVL 219
            RS SP  TK   + +  L+RN+ KDHI+EIFS YG+I+ ID+P++    +L +G+A+VEF+  ++A+ A  HM+GG IDGQEI+A  VL
Sbjct:  154 RSPSPKPTK---VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 239
The following BLAST results are available for this feature:
BLAST of TCONS_00036825-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNPS11.151e-2349.44RNA-binding protein with serine-rich domain 1 OS=H... [more]
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