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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036821 ID=TCONS_00036821|Name=TCONS_00036821|organism=Clytia hemisphaerica|type=transcript|length=1978bp
AAACAATGCAACTGCACgatgaaagctctttttaccAAATATGGtcaaaa
atgttggattctGCTTCATGTATAAACTCAGGCCGTACAGTTACGCCCTC
GCTGGTGTTCAAACGAACTCAGAGGTTGCAGCAAACGGACGTATCTATCT
ACTCTCTAACTTTAAACTTATAAACTTACAAAATGGCTGAAGATGATGTT
GCCGCTCTTGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGC
TGGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCTC
GTCACCAAGGTGTCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGT
GATGAAGCTCAATCCAAAAGAGGTATCCTCACCTTGAAATACCCCATCGA
ACACGGAATCGTCACCAACTGGGATGATATGGAAAAgATCTGGCATCACA
CTTTCTACAACGAACTCCGTGTTGCACCAGAAGAACACCCCGTCCTTCTT
ACTGAAGCTCCTTTGAACCCCAAAGCCAACAGAGAAAAGATGACCCAAAT
CATGTTCGAAACCTTCAACTCCCCAGCTATGTATGTCGCCATCCAAGCTG
TCTTATCTTTGTACGCTTCTGGACGTACCACCGGTATTGTCTTGGATTCT
GGAGATGGTGTTTCCCACACTGTCCCAATCTACGAAGGTTATGCTCTTCC
CCACGCCATCATCCGTCTTGATTTGGCTGGACGTGATTTGACCGACTACT
TGATGAAAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAA
CGTGAAATTGTCCGTGAcatcaaagaaaaattgtgCTATGTTGCCTTGGA
CTTCGAACAAGAAATGCAAACTGCTGCCTCAAGCTCCAGCTTGGAGAAAT
CCTATGAATTACCTGATGGACAAGTCATCACCATTGGAAATGAACGATTC
CGATGCCCAGAAACCCTCTTCCAACCTGCCTTCATTGGTATGGAATCTGC
TGGTATCCACGAAACCACCTACAACTCCATCATGAAATGCGATGTTGACA
TCCGTAAAGATTTGTATGCCAACACTGTCTTGTCTGGAGGTACGACTATG
TTCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCTCTGCCCTCGCTCC
ACCAACCATGAAAATCAAGATCATCGCTCCACCAGAAAGAAAATACTCCG
TCTGGATTGGAGGATCCATCTTGGCCTCACTCTCCACCTTCCAACAGATG
TGGATCTCCAAACAAGAATATGATGAATCTGGTCCATCCATCGTCCACAG
AAAATGCTTCTAAGTGCATTGCCATACTGGTAGCTCTTGGCTTGCGTTTG
CTAATTAACATCAAGGCAAAGGACAATCGTTATGTGAAGCAGTGTTTACC
ACCAGAACTGTTCTGTTCACTTTGATTTGAACGattatttttgtaaaaca
tTTGTACAGATTTTGTGCACTTGACTTTCTTGGAAGTCTTGGTTAACCCC
AATCAAAATTTTGTAGTAAAATCTCaatcaaaaaatgtaaataataaCTT
TAGGGAATATTGcaataaaagaaaattaaaatgctTCTTCCCGAAACATT
CAATATTCACTCGTTTAAATTTCCTTCCATGTCTGACTTTGCTCAATAAA
CTTTCACTTTCGGTTTTGAATTTTAATCCTGGATTAATCCCAACTTTGCT
TTCTGGTGATTTTGATGGAACTCAGGCTTCCAGTCTACCAATAACTGTCA
ATTTGCAATTTATCTGATTACCATTTTAGgactttttagcattcaaaact
TGCATGCCCAGCTGATTTCATTAACacaatttaaggctcaaaagtcTGTA
CAGTTCAAGCAAATCCCTCAttagaaagataattttgagtggaTTTATGA
ATGCTTTTAAAAATGTGTAGGTGTTACAAAAATGACTATGTGGCTATGAT
TTCTCGTCTCAtttaaagttgaaaatga Run BLAST on NCBI transcript from alignment at sc0001520:33719..36855+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036821 ID=TCONS_00036821|Name=TCONS_00036821|organism=Clytia hemisphaerica|type=transcript|length=3137bp|location=Sequence derived from alignment at sc0001520:33719..36855+ (Clytia hemisphaerica)
AAACAATGCAACTGCACgatgaaagctctttttaccAAATATGGtcaaaa
atgttggattctGCTTCATGTATAAACTCAGGCCGTACAGTTACGCCCTC
GCTGGTGTTCAAACGAACTCAGAGGTTGCAGCAAACGGACGTATCTATCT
ACTCTCTAACTTTAAACTTATAAACTTACAAAATGGCTGAAGATGATGTT
GCCGCTCTTGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGC
TGGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCTC
GTCACCAAGGTGTCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGT
GATGAAGCTCAATCCAAAAGAGGTATCCTCACCTTGAAATACCCCATCGA
ACACGGAATCGTCACCAACTGGGATGATATGGAAAAggtaaatttatttt
caagcttttttcAATGTCAATCTTTGAAtctaaattttcattgaaagtgG
GTGTGTCCTGAGCTTCACATTTCCAGTTATTTATAGTctatttattttct
atttccttTGGGAATCAGTCCAAGGTAATTAGATATCTTACTGTTGTAGG
ACCTATGTGTGATAACGACTGTGAACAACAAAATCATTTCTTTCTATTTA
GATCTGGCATCACACTTTCTACAACGAACTCCGTGTTGCACCAGAAGAAC
ACCCCGTCCTTCTTACTGNAAGGTTGTTTTATTGGTCGAAACAATGCAAC
TGCACgatgaaagctctttttaccAAATATGGtcaaaaatgttggattct
GCTTCATGTATAAACTCAGGCCGTACAGTTACGCCCTCGCTGGTGTTCAA
ACGAACTCAGAGGTTGCAGCAAACGGACGTATCTATCTACTCTCTAACTT
TAAACTTATAAACTTACAAAATGGCTGAAGATGATGTTGCCGCTCTTGTC
GTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGCTGGAGATGATGC
TCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCTCGTCACCAAGGTG
TCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGTGATGAAGCTCAA
TCCAAAAGAGGTATCCTCACCTTGAAATACCCCATCGAACACGGAATCGT
CACCAACTGGGATGATATGGAAAAggtaaatttattttcaagcttttttc
AATGTCAATCTTTGAAtctaaattttcattgaaagtgGGTGTGTCCTGAG
CTTCACATTTCCAGTTATTTATAGTctatttattttctatttccttTGGG
AATCAGTCCAAGGTAATTAGATATCTTACTGTTGTAGGACCTATGTGTGA
TAACGACTGTGAACAACAAAATCATTTCTTTCTATTTAGATCTGGCATCA
CACTTTCTACAACGAACTCCGTGTTGCACCAGAAGAACACCCCGTCCTTC
TTACTGAAGCTCCTTTGAACCCCAAAGCCAACAGAGAAAAGATGACCCAA
GTAAGTACTAATTAAAAATGCTATTAGATTAGTCCTTCTCTTAACCCAGA
AAAGGACCTTTTCTGACAATTTACATAGTTTGTTGTTTAAATCGAAATTA
ATGGCAGAAGATCAGTTTCAGCTTGAAACATCCTTCCTATCTACTCACAT
CTATCCTTTGGACTTGAAAGTAGAACATATTTTAAAACTGACTTATCCCT
TTTCCAGATCATGTTCGAAACCTTCAACTCCCCAGCTATGTATGTCGCCA
TCCAAGCTGTCTTATCTTTGTACGCTTCTGGACGTACCACCGGTATTGTC
TTGGATTCTGGAGATGGTGTTTCCCACACTGTCCCAATCTACGAAGGTTA
TGCTCTTCCCCACGCCATCATCCGTCTTGATTTGGCTGGACGTGATTTGA
CCGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCCTTCACCACC
ACTGCTGAACGTGAAATTGTCCGTGAcatcaaagaaaaattgtgCTATGT
TGCCTTGGACTTCGAACAAGAAATGCAAACTGCTGCCTCAAGCTCCAGCT
TGGAGAAATCCTATGAATTACCTGATGGACAAGTCATCACCATTGGAAAT
GAACGATTCCGATGCCCAGAAACCCTCTTCCAACCTGCCTTCATTGGTAT
GGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGCG
ATGTTGACATCCGTAAAGATTTGTATGCCAACACTGTCTTGTCTGGAGGT
ACGACTATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCTCTGC
CCTCGCTCCACCAACCATGAAAATCAAGATCATCGCTCCACCAGAAAGAA
AATACTCCGTCTGGATTGGAGGATCCATCTTGGCCTCACTCTCCACCTTC
CAACAGATGTGGATCTCCAAACAAGAATATGATGAATCTGGTCCATCCAT
CGTCCACAGAAAATGCTTCTAAGTGCATTGCCATACTGGTAGCTCTTGGC
TTGCGTTTGCTAATTAACATCAAGGCAAAGGACAATCGTTATGTGAAGCA
GTGTTTACCACCAGAACTGTTCTGTTCACTTTGATTTGAACGattatttt
tgtaaaacatTTGTACAGATTTTGTGCACTTGACTTTCTTGGAAGTCTTG
GTTAACCCCAATCAAAATTTTGTAGTAAAATCTCaatcaaaaaatgtaaa
taataaCTTTAGGGAATATTGcaataaaagaaaattaaaatgctTCTTCC
CGAAACATTCAATATTCACTCGTTTAAATTTCCTTCCATGTCTGACTTTG
CTCAATAAACTTTCACTTTCGGTTTTGAATTTTAATCCTGGATTAATCCC
AACTTTGCTTTCTGGTGATTTTGATGGAACTCAGGCTTCCAGTCTACCAA
TAACTGTCAATTTGCAATTTATCTGATTACCATTTTAGgactttttagca
ttcaaaactTGCATGCCCAGCTGATTTCATTAACacaatttaaggctcaa
aagtcTGTACAGTTCAAGCAAATCCCTCAttagaaagataattttgagtg
gaTTTATGAATGCTTTTAAAAATGTGTAGGTGTTACAAAAATGACTATGT
GGCTATGATTTCTCGTCTCAtttaaagttgaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036821-exon-sc0001520-1491911889:33719..34155 | TCONS_00036821-exon-sc0001520-1491911889:33719..34155 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1510915933:33719..34155 | TCONS_00036821-exon-sc0001520-1510915933:33719..34155 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1575043694:33719..34155 | TCONS_00036821-exon-sc0001520-1575043694:33719..34155 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1491911889:35108..35218 | TCONS_00036821-exon-sc0001520-1491911889:35108..35218 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1510915933:35108..35218 | TCONS_00036821-exon-sc0001520-1510915933:35108..35218 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1575043694:35108..35218 | TCONS_00036821-exon-sc0001520-1575043694:35108..35218 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1491911889:35426..36855 | TCONS_00036821-exon-sc0001520-1491911889:35426..36855 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1510915933:35426..36855 | TCONS_00036821-exon-sc0001520-1510915933:35426..36855 | Clytia hemisphaerica | exon |
| TCONS_00036821-exon-sc0001520-1575043694:35426..36855 | TCONS_00036821-exon-sc0001520-1575043694:35426..36855 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001520 | supercontig | sc0001520:33719..36855 + |
Blast
BLAST of TCONS_00036821 vs. Swiss-Prot (Human)
Match: ACTB (Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1) HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0 Identity = 359/374 (95.99%), Postives = 370/374 (98.93%), Query Frame = 3
Query: 189 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 1310
+DD+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GMES GIHETT+NSIMKCDVDIRKDLYANTVLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
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