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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036810 ID=TCONS_00036810|Name=TCONS_00036810|organism=Clytia hemisphaerica|type=transcript|length=966bp
ttggtttaaaatGCATCTAGTGTAACGAGAAATACCATAGAAACAGACTT
TTTACGCATCTGTTGAAATTAATGCATCTTCTAAACCGAGCTGAATTCAA
TCCACGCGAGCGTCATCGACCAAACTAACTTCCGTAGATGCTACTTTCTC
GGTTTCGCAGATTGGAAAGTTTGTTAAAATGGCTTGTTTCTATGGTTTTC
AATGTTTAACTGGATGCAATCCCGACCAATCAAAATCAAGGGAGTGATCT
TCCTTAAAAGCCGCGGCGAGACACCTTTGAAAGTCATTTGCTTCTCGTCA
CGATGGAGGTATGCTGGTTCGTGAGAAATTTTACACGGGAATGGACATTT
TAAACTGCatatttgaaaactttgaattgaacagaaagaaagaaacgatG
CAAGGATCACTAAAGATAATGCTGGTTTGTTTTGCGACAACCGCCTTAAC
TGAAAAGCTGAATCATGGTAATCAAGAACTATCAAGGACTACTGAGCAGT
GGAGAGCTGATTCTAGTATTCAACCATCCAAGCGAGCCACCAAaTGGGAA
TTGATGAAACTAACGAAAACTGAAATCCTACTGTAAATCATGTCTATGCC
CTTTTGCACTTTCGCTGGAATTTAGACATGATGATGGAATGGGGAGACAG
TGACAGTGTTATCAAAAGGTTAGTTTGCAAACTTTCACCATGCATTGTAT
ATCTAAAATTATCTAAAAGTCAGAAGTATGAAAATAACCTACCAAATAGT
GGAACTCCAAACAGTTTTCCCTCACATTATTTTTTTGTGCATGTGCGCAT
ATCTTGGGCTACCATcttgtaaaatctttttttttcttgcgcCGCCACAA
TGTTGAAAAACTTTGTTAAGGAATTTTTATTACGCACGTGCGTGCGCAGC
ATCACGCGactaattggtcagcctaagctgagcattcaaatacgtaaaat
tcggttcttccataag Run BLAST on NCBI transcript from alignment at sc0001518:7118..15204- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036810 ID=TCONS_00036810|Name=TCONS_00036810|organism=Clytia hemisphaerica|type=transcript|length=8087bp|location=Sequence derived from alignment at sc0001518:7118..15204- (Clytia hemisphaerica)
TTGGTTTAAAATGCATCTAGTGTAACGAGAAATACCATAGAAACAGACTT
TTTACGCATCTGTTGAAATTAATGCATCTTCTAAACCGAGCTGAATTCAA
TCCACGCGAGCGTCATCGACCAAACTAACTTCCGTAGATGCTACTTTCTC
GGTTTCGCAGATTGGAAAGTTTGTTAAAATGGCTTGTTTCTATGGTTTTC
AATGTTTAACTGGATGCAATCCCGACCAATCAAAATCAAGGGAGTGATCT
TCCTTAAAAGCCGCGGCGAGACACCTTTGAAAGTCATTTGCTTCTCGTCA
CGATGGAGGTATGCTGGTTCGTGAGAAATTTTACACGGGAATGGACATTT
TAAACTGCATATTTGAAAACTTTGAATTGAACAGAAAGAAAGAAACGATG
CAAGGATCACTAAAGATAATGCTGGTTTGTTTTGCGGTATGAATTTGATT
TTCTTTTCTGATTCTGTCTGAGTTTATGTTTCCTTCCATAGTCTGAATTA
TTGAAAATAGTTTAGGTTTGAAGGAATAATTATACGGATATTGAGACGAG
TTTTCTCTGAGAAAGGGTGTTTCTTAGAAACTAAAAAATCAAATTTGAAG
ATTTCAACCTTTTTGCACATTTTCATCTATGGTGCGTTTGAAAAAATAGC
AGGCAGTGAAAATTTCAAGCACTTTATTTTGGCCGTTATACAGCCAAAAT
ACTCAATTTTGAATTCAGTTTTAAAACTAAATGTGTCAGCAAAATGCTAA
GAATATGTAAGAAGGGGAACAAAATCAAAAATTTCCTAGCTTTTTGATAA
GCAAGGGGTCTTTAGACAAATTTCAAGGCCTCTCATATGTATCATGTATT
GATTGCTGTAAGTGCTTTGGTTCCCAAGCTGATGGAAACTCAATTTCTAA
TCAGGGACTGTCTCTAGTCATCTCCTGTCTGAGATGTCGTGTCTTTCTCA
GATTGAATAAAGAATTCGAAAATTTTTGAATGATCCTTTTTTGAGAACCC
TTGATTTTTTAAGTAAATTCAGTGCTGATTGTTAAAATGTGGAAATTCAG
TGTCTTGGAAAAGTAGCAGAGAGTAATTAAAAAGTAATGCTCATGTTCTA
CAAAATAAAATTTCCCCAGCAATAAAGCAAAAAGGCAAGTTTACTTTATT
TAGTGATTAGTTAGTGCTTCAATTATCGCTTTAACACTTTTGATGCTTTC
TCTTTCACAAAATTAATTAGCTCTTATCTGTTTCATTTTAAGCCCTAATC
AGATAAGTGACTCGACAATTTTCTAATTAGAGTAGAAAGGGCAAAGTCAG
ATTCAATGTGGTAACTTCAAAAGCTTTTTTAAAAATGGATCGAATTACTA
CAATATTCTCATGGACTGTATACTAAAGTTTTCTTAATGCAGCATTGAAA
TTTATGAATAGAGTGTCTTCATGTTCTTGAGCTCTATCAAGAATTATTGT
GTTTATTGTTGCTATGGATGCAATTATTGATGCACACTTTTTAATTCAAA
AGATTATCACTTTTTCACCACTCATTTACTTTGGATTCATAATTTGTTAA
GAACTCTGAGAAATTCCCAAATTTCTTTGCCTAAAGCCTAAAAAATTTAA
CCCTAATTTGATTCAATTTCTACAACTCCAACTACACAGTTTAAGTTAAA
ATTCTAAACCAAAACCAAAGAAGAAGTTTAAGAATTTGAATTGATGCTTA
GTCTGGTTGAGGCAAATTGATTTCTTTAATTTAAATTTTAGTGAGACTTT
GATATTTACTTTTTGCTAATTGAAAGAATTAATTCGAAGTAATTTTAAAG
CTTAGATTCTGTGTATTTTAGTGAGACTTTGATATTTACTTTTGGCTAAT
TGAAAGAATTAATTCGAAGGAATTTTAAAGCTAAGATTGTTTAGTTTTTT
TTACTGTATATTTTACACTCAAGTGCAACTCAACAAAGTTAAGCATTCAT
ATTTTAGACAAGTTCTCAACTTAGATTTTTGATTTAAATTATTTGGATCA
ATATTAAGTTTCATGAAAGACCTCTTAAGAAAAAAATGTGCTTAAGTTTA
CTTGAATTGAATTTCCAGCTTGAAACTGTTACAATTTTGAATTCGAAACA
CGTAAACAAAATTACTTTAATCTGGTTTAGGCTTTATTTACTTCATAGAG
CCAAATTAAAAATCTACAAGAAAGAGAGAGAGCGAGAGTTACAAAGGATC
CTATGCCTGAATATCTGCGAAATTTAGGGTATTTGTATGTGTTCATTTTG
ACAAAAAAGATCATCAAATCCTAAAATATTCAATTCTATTATGTAAGTCA
GCTGTTTATTATGGTACTGTGATAAGGAATTTGCTTGAAGAATGGGTTTA
AGAGGTGGGTATAGGTTAGATAGCAACACTTTTCAATTTTACCTTTTCGA
GAAGCAACGTAACGAAATACAGAGTTTTTCCTTGCAAATACAGAGTTTTT
CCTTGCAAATAGGGAAAACTCTGTGTTTGCAAGAACTCTGGTTTTACAAG
AAACTCTGTGTTTACAAGAGATTTTTATTATGGAAAACATTTTTTTTCTT
GTAAAAGATAGTAAGATTAGTGTTTATTCTCCTAGACAAAATACAAGGCA
GCCCTTACAAAGCAAGAAAATACTCAACTTGACAAAGACTACATTAAGAT
TTGCCTTGAGCAACACAGGAATAATTTCCTCATGAAAACAGCATATCATT
TTTCCTTTTTTTGAAAATACTAGAAACTTTTTTTTGTGTAACATTAAAGA
TATCATCATTTTCCATACAAAAAGTACAAGCCTTGCATTTTTTGCTTTAC
TACAATTACAGATTCTTTAATAAGAAAATTAACAATATATAGAAATAAAT
TAAAATTTGCCTTGATAAAAACCATGATGATTCTTCTTGAGAAATACAAA
GTAGTTTTCCCGGAAGGTTTTTTGATTTTCCTTCGTAAAACATGGATTAA
TTTCCTTGATTTTACTTGAAAATGATACAGAAACAACAATGTCTAACATT
AGTTTCTTTTCTTTGAGAATACAGGATACATTTTCCTCGAAAATATGCAT
TGATTTGCCTTGAAAAATACAAATTGCTTTACTTCAGATTACAGGATTTC
TTTTCCTCTAAAAAATACGATTTTACCTGAGAATGACAATGAAATTATCC
TGCTGTCTTTTTAAAATACGCATATACGCATGGGATAACAGGAAAGCTGA
AAGTAATAGCATGAAATAGAAATGCGCCTGGACGCACATGGATGACTTCC
CTAGAATTTAAAAAAGAACTATTGTTGAAGGATACATTGATTTTACTGAA
AAGTATTGAGAAAAAACATCTTTCTTGAGTTATAGTCTTTCCAAAAAATA
TACTTAATTTTATTTTCCTTGGAAAATACGCATTTTTTTTGAGAAACAAT
TTTCTTGTAGAATACGCAATGTCTAAATGAGACTAAAATCATTTTCTTTG
AAAATTTGCATTGATTTACCTTGAGAATACAGAAATTATTTTATTTTCAA
AAGCGCAATGATTTTCTTTTAGAAGGAAGGCAAAACTTTCCTTAAAATAT
ATTCACGGAAGATTTTCCTTGAAAGAATACGCATTATTTTCCTTGGGGAT
ACAGGAATAGGAACGAGTAAACTCCATTATACTTTGAGCATTCTCATACT
AAGTTTCCCATTTTATATGTAATTATTTGAAAACTATTCAAAGTGTTATC
ATTTAGAGGGAAAGCCATAGATAAGAAAGTTTGTATATCTGAGATGGCAT
TGTGGAAAGTGACGTATAATATCCAAAAAGACAGTTAATTCATAACGACA
CAAATGATAATGTTTTTTTTTCTAAGTTGTAGAAGTCTGTCATGAAATTT
AAAATTGATCCAAGGAATCTAAGTCAAAAATTTGAGTTGAAAACTAGCCT
GGATATCCAGCCCTTAAACTTTTTTTTTGATTTTGATATTTCTTATGTTT
ACGGTCTGGTTTACCTAGATTGTCTGCATTCTCATCTGAGGATTATTATG
CGGATATTCTGATTGGTTGGGAAAGCGAATCAGAGATCTGAATGGTGGCG
CGCGTATAAGAAATTATGCAAGCCGACTTGAAGTGTTCGGCTAAATATAA
AAGGTGGACAGCGCAGGCGTTCATCAGCAAGGCGCATATTACATATATAC
GCTGCTTTGCAAATCTCCCTGACTTTTCTTCTTCGAAGCAAATAACAACA
GAATATCTAATTATCTCCCTTGGGTGTTTGACCACGCATCCAAATAAAAA
TAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTAAAATTCGAATGCTTCATAAAATGCTTCTTGGAGAGACACTTGGGTAT
AAAATATACAGTAAAAACTAAACAATGTTAGCTCTAAAACACCTTCAAAT
TTAAATTCTTTCAATTAGACAAAAGTAAATATCAAAATCTCACTAAAATT
TGAATTGAAAGAAATCAATTTGGCTCAACCAAATATTTAAACTGTTCTCT
TTGGTTTTTGCTTAGGTGTGTTACAAACTTTAAAGAAATCAAATTATGGT
TTAATTTGTAAGGTTCTTGGCAAAGAATTTTAGGAATTTCTCAGATTTCT
TAACAAATTATTCCAAAGTAGATGAGCGATGAAAAAGTGAATAATCTTCA
ATTAATAAGTGTACATAATAAATTGCATCCAGAGCAATAATCAACACAAA
ATTGCTTGGTGGAGCTCATGATGAAAAAACTCTATTCATAGAATTCAATG
CTACATTGAGAAAGCCTTAGTATATATTATACACTCTATAAGAATATTAC
AATTCCATTCATTTTCAAAGAAATTTCCGAAGTTACCACTTCAAATCTAC
CTTTGCCCTTTTCATTCTTATTTAAGAAAACAGTCTACTGTATCTAACAT
AAAATGACATTGATGGAACACATTAATTTCTTGAAAAAAGGAGGTAAAAA
CATCCAAAGTGTCAAAGCTTTAACTGGTTAGTTGATTTGTAGTTGGTTAG
TTAGTGGATTTTAATGAAACCAATTTGGCATTTTACTGGACAGAATTATT
TTGTATTTACAAAAGTTATTATTTGTTATCATTTGTTTTTATTTACAATA
ACCATGTGGTTGAATGAATTTTGATTGCGGCTAAATGAATTTTGATTGTA
TTTAGTAATGACTATCTCAAATTTTTAGACAACCGCCTTAACTGAAAAGC
TGAATCATGGTAATCAAGAACTATCAAGGACTACTGAGCAGTGGAGAGCT
GATTCTAGTATTCAACCATCCAAGCGAGCCACCAAGTAAGTCAATTGTAT
TTCTTTGATAATGATTGTTACATGGTTGGTTTCACCAAGGACACAACACA
ACGACACGACACACCGATTTATTCCAAAATATATTTTTAATGCACTCAGT
GATCACAAAACATAATGTCTTCTACTTTTCTCACAATCACATCTCAAAGA
TCACAAAAATTCAATTTTTGTAGCTCAATATGCACACATTTCCAGGACGC
TTAGGTAAATTAAAATTAACTTTCAAATTATTTTAAAAATCTTGATGACA
TCAGCAGAAATTGCAAAAATTTGATTTTCTACCATTTGGGACGATTGGTT
GAAACACGGGACTGTTGATATCATAAAGATAAGTTGAAAAGGGCGCACTA
TAAAGTTATGACATGTTATGACAGACAGACAGAAAGTATGATTGATAAAA
TTGTTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGATTTAACAGTAGG
TGAAAATACAGACCAGATATCAACAGTCCGNCAATCATATTGAATACCTT
CTATTGTATTGAGTACTTTCCAGCCTTTGATTTTATCAAGTACTATGTTT
CCAGTATGAAACCAAGTTAACTTTGGCCAATTAAAACATGCAATTCACGC
GCAAAAACCACTTTCGTTTCCTCCGACCAAATAGAATGTGCGATATGAGT
TACAGGCAGCAAAGGCACACAAAATGGCAGGGAATATGGCTGGGTANCAT
GTTATGACAGACAGACAGAAAGTATGATTGATAAAATTGTTGGAGTTATC
AAAACAAATTTGTTGTCAAAGAGATTTAACAGTAGGTGAAAATACAGACC
AGATATCAACAGTCCGGTGTTTCAACCAATCGTTCCAAGTTAGAGCAGTT
GACGGTAGCTTTTTTATACTGAAAAAGGCTTGTTCATCTCACCCATAAAA
AATTTTGCATTACATTGAAATGGTTTGTTGTACTGTAATTTGGTAAACCC
GTGTTAAGCTTTCTCTCAATGTTTTTTTTCTTTCTGAAATATCTGGATAT
GCATTCTTGAAATAATTGAATCANTATTCAATAAGATTGAAGGTAATGGA
AAAGTAATCGAAATGATTGAACAAATCGAGAATGGTTAAAGAAAATGCCA
TAATCTGGAATTGAGTGAGTATTTGATCACCAATAAAATTGATAATTGGT
CACTGACTACCTTCGATTATTATCGATCATTATTGATTACTTCGATCATC
ACAATCAAACGTTTGATTACTACCGTCTGGAATTGTTGGCAAACGATATC
ATCAGAGATGATATAGCATGCATCCTCTCTTATTTTCCCCCTGTTTTCTA
CTTTCCTATTTTCTATCCTGATTCTCTGACTTTCTCTAGTGTTTTTAACT
GTTTTCTAAGTATTTTTCTGAAATTTGCCCATACTGAACCGGTGAAATAG
GTCTCCGACCTCGGCTAGGTCCCTACAGGATCCTAAGTTAGATCACAGGG
TACGGATGCCCCTAACTGATAAAAACCCAACCCACGTCTAGGTCCATAGA
TTGAAAATATTCAATTGCATCCTGGTGGATGATATCGTCTGCCAACCGTT
TGGATTACTACTTTGAGAATCAAGTTTCTCGATGATTAGTACCGTCTGGT
TGTTTTGATCCTAGAGTCAGTGGAGCTTCATTCTTTAAATTTGTTTTTCA
TACTTTCTAGGGTTACTTAATTTGCAAAACAATTATGCGATATAGTTAAT
TTTCTTCTTTCCAGATGGGAATTGATGAAACTAACGAAAACTGAAATCCT
ACTGTAAATCATGTCTATGCCCTTTTGCACTTTCGCTGGAATTTAGACAT
GATGATGGAATGGGGAGACAGTGACAGTGTTATCAAAAGGTTAGTTTGCA
AACTTTCACCATGCATTGTATATCTAAAATTATCTAAAAGTCAGAAGTAT
GAAAATAACCTACCAAATAGTGGAACTCCAAACAGTTTTCCCTCACATTA
TTTTTTTGTGCATGTGCGCATATCTTGGGCTACCATCTTGTAAAATCTTT
TTTTTTCTTGCGCCGCCACAATGTTGAAAAACTTTGTTAAGGAATTTTTA
TTACGCACGTGCGTGCGCAGCATCACGCGACTAATTGGTCAGCCTAAGCT
GAGCATTCAAATACGTAAAATTCGGTTCTTCCATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036810-exon-sc0001518-1575043694:14769..15204 | TCONS_00036810-exon-sc0001518-1575043694:14769..15204 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1575043694:9270..9376 | TCONS_00036810-exon-sc0001518-1575043694:9270..9376 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1575043694:7118..7540 | TCONS_00036810-exon-sc0001518-1575043694:7118..7540 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1510915933:14769..15204 | TCONS_00036810-exon-sc0001518-1510915933:14769..15204 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1510915933:9270..9376 | TCONS_00036810-exon-sc0001518-1510915933:9270..9376 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1510915933:7118..7540 | TCONS_00036810-exon-sc0001518-1510915933:7118..7540 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1491911889:14769..15204 | TCONS_00036810-exon-sc0001518-1491911889:14769..15204 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1491911889:9270..9376 | TCONS_00036810-exon-sc0001518-1491911889:9270..9376 | Clytia hemisphaerica | exon |
| TCONS_00036810-exon-sc0001518-1491911889:7118..7540 | TCONS_00036810-exon-sc0001518-1491911889:7118..7540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001518 | supercontig | sc0001518:7118..15204 - |
Blast
The following BLAST results are available for this feature:
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