XLOC_021741 (gene) - C. hemisphaerica

Overview
NameXLOC_021741
Unique NameXLOC_021741
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001518:7118..15204-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021741 ID=XLOC_021741|Name=XLOC_021741|organism=Clytia hemisphaerica|type=gene|length=8087bp|location=Sequence derived from alignment at sc0001518:7118..15204- (Clytia hemisphaerica)
TTGGTTTAAAATGCATCTAGTGTAACGAGAAATACCATAGAAACAGACTT
TTTACGCATCTGTTGAAATTAATGCATCTTCTAAACCGAGCTGAATTCAA
TCCACGCGAGCGTCATCGACCAAACTAACTTCCGTAGATGCTACTTTCTC
GGTTTCGCAGATTGGAAAGTTTGTTAAAATGGCTTGTTTCTATGGTTTTC
AATGTTTAACTGGATGCAATCCCGACCAATCAAAATCAAGGGAGTGATCT
TCCTTAAAAGCCGCGGCGAGACACCTTTGAAAGTCATTTGCTTCTCGTCA
CGATGGAGGTATGCTGGTTCGTGAGAAATTTTACACGGGAATGGACATTT
TAAACTGCATATTTGAAAACTTTGAATTGAACAGAAAGAAAGAAACGATG
CAAGGATCACTAAAGATAATGCTGGTTTGTTTTGCGGTATGAATTTGATT
TTCTTTTCTGATTCTGTCTGAGTTTATGTTTCCTTCCATAGTCTGAATTA
TTGAAAATAGTTTAGGTTTGAAGGAATAATTATACGGATATTGAGACGAG
TTTTCTCTGAGAAAGGGTGTTTCTTAGAAACTAAAAAATCAAATTTGAAG
ATTTCAACCTTTTTGCACATTTTCATCTATGGTGCGTTTGAAAAAATAGC
AGGCAGTGAAAATTTCAAGCACTTTATTTTGGCCGTTATACAGCCAAAAT
ACTCAATTTTGAATTCAGTTTTAAAACTAAATGTGTCAGCAAAATGCTAA
GAATATGTAAGAAGGGGAACAAAATCAAAAATTTCCTAGCTTTTTGATAA
GCAAGGGGTCTTTAGACAAATTTCAAGGCCTCTCATATGTATCATGTATT
GATTGCTGTAAGTGCTTTGGTTCCCAAGCTGATGGAAACTCAATTTCTAA
TCAGGGACTGTCTCTAGTCATCTCCTGTCTGAGATGTCGTGTCTTTCTCA
GATTGAATAAAGAATTCGAAAATTTTTGAATGATCCTTTTTTGAGAACCC
TTGATTTTTTAAGTAAATTCAGTGCTGATTGTTAAAATGTGGAAATTCAG
TGTCTTGGAAAAGTAGCAGAGAGTAATTAAAAAGTAATGCTCATGTTCTA
CAAAATAAAATTTCCCCAGCAATAAAGCAAAAAGGCAAGTTTACTTTATT
TAGTGATTAGTTAGTGCTTCAATTATCGCTTTAACACTTTTGATGCTTTC
TCTTTCACAAAATTAATTAGCTCTTATCTGTTTCATTTTAAGCCCTAATC
AGATAAGTGACTCGACAATTTTCTAATTAGAGTAGAAAGGGCAAAGTCAG
ATTCAATGTGGTAACTTCAAAAGCTTTTTTAAAAATGGATCGAATTACTA
CAATATTCTCATGGACTGTATACTAAAGTTTTCTTAATGCAGCATTGAAA
TTTATGAATAGAGTGTCTTCATGTTCTTGAGCTCTATCAAGAATTATTGT
GTTTATTGTTGCTATGGATGCAATTATTGATGCACACTTTTTAATTCAAA
AGATTATCACTTTTTCACCACTCATTTACTTTGGATTCATAATTTGTTAA
GAACTCTGAGAAATTCCCAAATTTCTTTGCCTAAAGCCTAAAAAATTTAA
CCCTAATTTGATTCAATTTCTACAACTCCAACTACACAGTTTAAGTTAAA
ATTCTAAACCAAAACCAAAGAAGAAGTTTAAGAATTTGAATTGATGCTTA
GTCTGGTTGAGGCAAATTGATTTCTTTAATTTAAATTTTAGTGAGACTTT
GATATTTACTTTTTGCTAATTGAAAGAATTAATTCGAAGTAATTTTAAAG
CTTAGATTCTGTGTATTTTAGTGAGACTTTGATATTTACTTTTGGCTAAT
TGAAAGAATTAATTCGAAGGAATTTTAAAGCTAAGATTGTTTAGTTTTTT
TTACTGTATATTTTACACTCAAGTGCAACTCAACAAAGTTAAGCATTCAT
ATTTTAGACAAGTTCTCAACTTAGATTTTTGATTTAAATTATTTGGATCA
ATATTAAGTTTCATGAAAGACCTCTTAAGAAAAAAATGTGCTTAAGTTTA
CTTGAATTGAATTTCCAGCTTGAAACTGTTACAATTTTGAATTCGAAACA
CGTAAACAAAATTACTTTAATCTGGTTTAGGCTTTATTTACTTCATAGAG
CCAAATTAAAAATCTACAAGAAAGAGAGAGAGCGAGAGTTACAAAGGATC
CTATGCCTGAATATCTGCGAAATTTAGGGTATTTGTATGTGTTCATTTTG
ACAAAAAAGATCATCAAATCCTAAAATATTCAATTCTATTATGTAAGTCA
GCTGTTTATTATGGTACTGTGATAAGGAATTTGCTTGAAGAATGGGTTTA
AGAGGTGGGTATAGGTTAGATAGCAACACTTTTCAATTTTACCTTTTCGA
GAAGCAACGTAACGAAATACAGAGTTTTTCCTTGCAAATACAGAGTTTTT
CCTTGCAAATAGGGAAAACTCTGTGTTTGCAAGAACTCTGGTTTTACAAG
AAACTCTGTGTTTACAAGAGATTTTTATTATGGAAAACATTTTTTTTCTT
GTAAAAGATAGTAAGATTAGTGTTTATTCTCCTAGACAAAATACAAGGCA
GCCCTTACAAAGCAAGAAAATACTCAACTTGACAAAGACTACATTAAGAT
TTGCCTTGAGCAACACAGGAATAATTTCCTCATGAAAACAGCATATCATT
TTTCCTTTTTTTGAAAATACTAGAAACTTTTTTTTGTGTAACATTAAAGA
TATCATCATTTTCCATACAAAAAGTACAAGCCTTGCATTTTTTGCTTTAC
TACAATTACAGATTCTTTAATAAGAAAATTAACAATATATAGAAATAAAT
TAAAATTTGCCTTGATAAAAACCATGATGATTCTTCTTGAGAAATACAAA
GTAGTTTTCCCGGAAGGTTTTTTGATTTTCCTTCGTAAAACATGGATTAA
TTTCCTTGATTTTACTTGAAAATGATACAGAAACAACAATGTCTAACATT
AGTTTCTTTTCTTTGAGAATACAGGATACATTTTCCTCGAAAATATGCAT
TGATTTGCCTTGAAAAATACAAATTGCTTTACTTCAGATTACAGGATTTC
TTTTCCTCTAAAAAATACGATTTTACCTGAGAATGACAATGAAATTATCC
TGCTGTCTTTTTAAAATACGCATATACGCATGGGATAACAGGAAAGCTGA
AAGTAATAGCATGAAATAGAAATGCGCCTGGACGCACATGGATGACTTCC
CTAGAATTTAAAAAAGAACTATTGTTGAAGGATACATTGATTTTACTGAA
AAGTATTGAGAAAAAACATCTTTCTTGAGTTATAGTCTTTCCAAAAAATA
TACTTAATTTTATTTTCCTTGGAAAATACGCATTTTTTTTGAGAAACAAT
TTTCTTGTAGAATACGCAATGTCTAAATGAGACTAAAATCATTTTCTTTG
AAAATTTGCATTGATTTACCTTGAGAATACAGAAATTATTTTATTTTCAA
AAGCGCAATGATTTTCTTTTAGAAGGAAGGCAAAACTTTCCTTAAAATAT
ATTCACGGAAGATTTTCCTTGAAAGAATACGCATTATTTTCCTTGGGGAT
ACAGGAATAGGAACGAGTAAACTCCATTATACTTTGAGCATTCTCATACT
AAGTTTCCCATTTTATATGTAATTATTTGAAAACTATTCAAAGTGTTATC
ATTTAGAGGGAAAGCCATAGATAAGAAAGTTTGTATATCTGAGATGGCAT
TGTGGAAAGTGACGTATAATATCCAAAAAGACAGTTAATTCATAACGACA
CAAATGATAATGTTTTTTTTTCTAAGTTGTAGAAGTCTGTCATGAAATTT
AAAATTGATCCAAGGAATCTAAGTCAAAAATTTGAGTTGAAAACTAGCCT
GGATATCCAGCCCTTAAACTTTTTTTTTGATTTTGATATTTCTTATGTTT
ACGGTCTGGTTTACCTAGATTGTCTGCATTCTCATCTGAGGATTATTATG
CGGATATTCTGATTGGTTGGGAAAGCGAATCAGAGATCTGAATGGTGGCG
CGCGTATAAGAAATTATGCAAGCCGACTTGAAGTGTTCGGCTAAATATAA
AAGGTGGACAGCGCAGGCGTTCATCAGCAAGGCGCATATTACATATATAC
GCTGCTTTGCAAATCTCCCTGACTTTTCTTCTTCGAAGCAAATAACAACA
GAATATCTAATTATCTCCCTTGGGTGTTTGACCACGCATCCAAATAAAAA
TAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CTAAAATTCGAATGCTTCATAAAATGCTTCTTGGAGAGACACTTGGGTAT
AAAATATACAGTAAAAACTAAACAATGTTAGCTCTAAAACACCTTCAAAT
TTAAATTCTTTCAATTAGACAAAAGTAAATATCAAAATCTCACTAAAATT
TGAATTGAAAGAAATCAATTTGGCTCAACCAAATATTTAAACTGTTCTCT
TTGGTTTTTGCTTAGGTGTGTTACAAACTTTAAAGAAATCAAATTATGGT
TTAATTTGTAAGGTTCTTGGCAAAGAATTTTAGGAATTTCTCAGATTTCT
TAACAAATTATTCCAAAGTAGATGAGCGATGAAAAAGTGAATAATCTTCA
ATTAATAAGTGTACATAATAAATTGCATCCAGAGCAATAATCAACACAAA
ATTGCTTGGTGGAGCTCATGATGAAAAAACTCTATTCATAGAATTCAATG
CTACATTGAGAAAGCCTTAGTATATATTATACACTCTATAAGAATATTAC
AATTCCATTCATTTTCAAAGAAATTTCCGAAGTTACCACTTCAAATCTAC
CTTTGCCCTTTTCATTCTTATTTAAGAAAACAGTCTACTGTATCTAACAT
AAAATGACATTGATGGAACACATTAATTTCTTGAAAAAAGGAGGTAAAAA
CATCCAAAGTGTCAAAGCTTTAACTGGTTAGTTGATTTGTAGTTGGTTAG
TTAGTGGATTTTAATGAAACCAATTTGGCATTTTACTGGACAGAATTATT
TTGTATTTACAAAAGTTATTATTTGTTATCATTTGTTTTTATTTACAATA
ACCATGTGGTTGAATGAATTTTGATTGCGGCTAAATGAATTTTGATTGTA
TTTAGTAATGACTATCTCAAATTTTTAGACAACCGCCTTAACTGAAAAGC
TGAATCATGGTAATCAAGAACTATCAAGGACTACTGAGCAGTGGAGAGCT
GATTCTAGTATTCAACCATCCAAGCGAGCCACCAAGTAAGTCAATTGTAT
TTCTTTGATAATGATTGTTACATGGTTGGTTTCACCAAGGACACAACACA
ACGACACGACACACCGATTTATTCCAAAATATATTTTTAATGCACTCAGT
GATCACAAAACATAATGTCTTCTACTTTTCTCACAATCACATCTCAAAGA
TCACAAAAATTCAATTTTTGTAGCTCAATATGCACACATTTCCAGGACGC
TTAGGTAAATTAAAATTAACTTTCAAATTATTTTAAAAATCTTGATGACA
TCAGCAGAAATTGCAAAAATTTGATTTTCTACCATTTGGGACGATTGGTT
GAAACACGGGACTGTTGATATCATAAAGATAAGTTGAAAAGGGCGCACTA
TAAAGTTATGACATGTTATGACAGACAGACAGAAAGTATGATTGATAAAA
TTGTTGGAGTTATCAAAACAAATTTGTTGTCAAAGAGATTTAACAGTAGG
TGAAAATACAGACCAGATATCAACAGTCCGNCAATCATATTGAATACCTT
CTATTGTATTGAGTACTTTCCAGCCTTTGATTTTATCAAGTACTATGTTT
CCAGTATGAAACCAAGTTAACTTTGGCCAATTAAAACATGCAATTCACGC
GCAAAAACCACTTTCGTTTCCTCCGACCAAATAGAATGTGCGATATGAGT
TACAGGCAGCAAAGGCACACAAAATGGCAGGGAATATGGCTGGGTANCAT
GTTATGACAGACAGACAGAAAGTATGATTGATAAAATTGTTGGAGTTATC
AAAACAAATTTGTTGTCAAAGAGATTTAACAGTAGGTGAAAATACAGACC
AGATATCAACAGTCCGGTGTTTCAACCAATCGTTCCAAGTTAGAGCAGTT
GACGGTAGCTTTTTTATACTGAAAAAGGCTTGTTCATCTCACCCATAAAA
AATTTTGCATTACATTGAAATGGTTTGTTGTACTGTAATTTGGTAAACCC
GTGTTAAGCTTTCTCTCAATGTTTTTTTTCTTTCTGAAATATCTGGATAT
GCATTCTTGAAATAATTGAATCANTATTCAATAAGATTGAAGGTAATGGA
AAAGTAATCGAAATGATTGAACAAATCGAGAATGGTTAAAGAAAATGCCA
TAATCTGGAATTGAGTGAGTATTTGATCACCAATAAAATTGATAATTGGT
CACTGACTACCTTCGATTATTATCGATCATTATTGATTACTTCGATCATC
ACAATCAAACGTTTGATTACTACCGTCTGGAATTGTTGGCAAACGATATC
ATCAGAGATGATATAGCATGCATCCTCTCTTATTTTCCCCCTGTTTTCTA
CTTTCCTATTTTCTATCCTGATTCTCTGACTTTCTCTAGTGTTTTTAACT
GTTTTCTAAGTATTTTTCTGAAATTTGCCCATACTGAACCGGTGAAATAG
GTCTCCGACCTCGGCTAGGTCCCTACAGGATCCTAAGTTAGATCACAGGG
TACGGATGCCCCTAACTGATAAAAACCCAACCCACGTCTAGGTCCATAGA
TTGAAAATATTCAATTGCATCCTGGTGGATGATATCGTCTGCCAACCGTT
TGGATTACTACTTTGAGAATCAAGTTTCTCGATGATTAGTACCGTCTGGT
TGTTTTGATCCTAGAGTCAGTGGAGCTTCATTCTTTAAATTTGTTTTTCA
TACTTTCTAGGGTTACTTAATTTGCAAAACAATTATGCGATATAGTTAAT
TTTCTTCTTTCCAGATGGGAATTGATGAAACTAACGAAAACTGAAATCCT
ACTGTAAATCATGTCTATGCCCTTTTGCACTTTCGCTGGAATTTAGACAT
GATGATGGAATGGGGAGACAGTGACAGTGTTATCAAAAGGTTAGTTTGCA
AACTTTCACCATGCATTGTATATCTAAAATTATCTAAAAGTCAGAAGTAT
GAAAATAACCTACCAAATAGTGGAACTCCAAACAGTTTTCCCTCACATTA
TTTTTTTGTGCATGTGCGCATATCTTGGGCTACCATCTTGTAAAATCTTT
TTTTTTCTTGCGCCGCCACAATGTTGAAAAACTTTGTTAAGGAATTTTTA
TTACGCACGTGCGTGCGCAGCATCACGCGACTAATTGGTCAGCCTAAGCT
GAGCATTCAAATACGTAAAATTCGGTTCTTCCATAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00036811TCONS_00036811Clytia hemisphaericatranscript
TCONS_00036810TCONS_00036810Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001518supercontigsc0001518:7118..15204 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.11	4.39	4.54	6.77	0.9	0.55	1.09	0.99	0.73	0.3	0.66	0.77	0.45	0.68	0.33	0.16	0.47	0.27	0.31	0.44	0.32	0.4	1.99	1.91	0.11	0.67	0.63	0.47	1.03	1.18