TCONS_00036754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036754
Unique NameTCONS_00036754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036754 ID=TCONS_00036754|Name=TCONS_00036754|organism=Clytia hemisphaerica|type=transcript|length=1540bp
tagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAGATCTAGATC
AAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTTACAGTAAAT
CAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGGAGAAGATCA
TATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAGAAGGAGAAG
ATATAGCAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCCAATGT
CATCTAGAAAAAGACATGTAGGAAGTAGGGAAGCACCACCAACTGGAAAA
TGTTTGGGTGTATTTGGTCTCAGTTTGTACACAACAGAACGTGAAGTTAA
AGATATGTTTGAGAAATATGGAAGGGTTGCAGATTGTCGTATTGTTCATG
ATCATGCTACTGGACGATCTCGTGGATTTGCATTTATCAATATGGAATCT
ATAAACGGTGCTGCAGATGCCAAAGAACGTTTAAATGGTGCAGAACTTGA
TGGACGACGTATTCGTGTAGATTACTCAATCACGCAACGTGCACACACTC
CAACTCCTGGTGTTTACATGGGACGACCAACAAAACGAAGTAGTTATCGT
ggcggtggtggtggtggtggtagtGGGCGTTACAGTGGTGGCGCTGGCGG
AGGCAGATCCAGCAGGCGTTCGTACTCTAGATCAAGATCCAGATCCAGAT
CCAGATCACCTTACTATCGCTAGTCTGGCGTTTGGATTCATTGACGGTAT
CGAAAAACGTATTAAAAATGTGATCTCGTTTATTGGAAAGAAACTTGTAA
TCGTCGACAACCGGACAAGCTGCTCAACAACACGAAAGTGCCTTCGTGCA
AAACCATAAACTCTGTTAGAGATTGTCTAGGCTATTTCGATGCCTTATAa
agagtttttatttttatttgtagaTAACATATGATGTaagcttttttcaa
cttttcttttctAGTTTTATGGTAAGAAGAGTGAAGATTCATGTCAGAAG
GTTTTGAAGATTGAAGTCGGAAGAGGTCGATCAAGAACGACCACTCTAAC
CGAACGCTTCTTCAAGAAAATCGAAACCCTGGCAATTCGTGAAGAAAGAA
GTaaagaataagaaaaatttattgccctgaaaatttgaagaaacaaGAAA
ACGAAATAGAAGAAAACCTTTCTGAAACGACTCTAATTCCTTGAAGAAAG
AAGTTAAAATTAGAAGAAAACCTTAGAAGATTGAAGATTTTTCGACCTTA
TGAAGAAAACCGACATTTCTTAACAGGGtcatgaaaatttgaagaatgaA
GAGAAGAAATTGTGTGCTAAGTatgttatttttcaattttaattctaTCT
AATTTGTGTTTTTATCACTTTCTGATCAGTTAGTTTTTATATCTGGAACA
TTTCACTTCAACGTTCTCGGCTAAACGACGATTGTTTACAACACCTACGA
TGATCGATGGACAAAAGAGGATGATTTGATGGTGCATTGGATTAACGgat
caattttaaaacttcagctttctttcttttttgtttttga
Run BLAST on NCBI

transcript from alignment at sc0001508:8195..17869+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036754 ID=TCONS_00036754|Name=TCONS_00036754|organism=Clytia hemisphaerica|type=transcript|length=9675bp|location=Sequence derived from alignment at sc0001508:8195..17869+ (Clytia hemisphaerica)
tagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAGATCTAGATC
AAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTTACAGTAAAT
CAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGGAGAAGATCA
TATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAGAAGGAGAAG
ATATAGCAGGTTAAATTTTGGATTTGCTTTATActgaacatttaaaaaaa
aattattttgtgtgcttaataaaatttaaaggATGCAAGGTTTTTTGACA
GTTCCTGTTTATAAAATATGTGAAAACCTTTTATTTTCAGGGTTCTTTAT
TCTGCCAAAACTAATTCCAAGTACATAAACtgtgtttttggacctacccc
ggtggaggtcctataaattaatctttgtccgttcgttcgttcgttattag
ctttcctcgtgattggctcattatttttttcagattttttgcacaaagat
gcataactataaacccttgaatgtgatggagccaatttttgaagaaaaaa
attttttgggcaaatctgtgccaaaaaacagcttaaaaaaagggtttttt
ggactttgtgaaaaattagatcattaattttttctgattttttgcatgaa
agtagggtaccatcataggtaaaatatggcttaagcagatttttgcaaaa
aaattttgttggctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CAAAATAGATGCAATCGACAACTTGGCCTTCTGCCATCGTTTCACAACAT
TGGTCAATGTAATAAAGAAGTTGAGTGACTGTTGATTGCTTACCAATAAA
ACCGTACTGTTTTtcagataaaagattttcttccatAAGATGATCCATGA
TTACTTTTCGTAACACCGACTCCATCATTTTGCATACTACAGTATAGACA
GTATAGATTACTGTATAGATGTTAAACTGACTGGACGGTAGTTTATGGCT
AGGTTGTGAGCACCCTTGTTCTTGTAGATTGGCGTGACATGCATTcatgt
ttagacatgaaattttggttgcttggcgcgTTTTTATAGAAAAACTGGCC
AAATtcaatatttttttataagcacattatcaattacttaggtattagct
tttcttgagattggctctttcattctttatgattttttgtacaaagatgc
ataactataatccctcgaatgtgacggagcctggtttttgaaagaaaaaa
aaattgggagcaaatttgggccaaaaaacagctaaaaacaggttttttgg
actttgtgaaaaattgaaaaaacgtttttttataagaaacaaacgactac
acgctttttttaaataagaatacactgtataagaatgtccatgatgaaaa
tgaccaaaaaactaagaatatgctaagaatatcaccttCATGGAATTTTG
ttactaaagctaagaatgtcattttaagagcattttcaattataaattat
caattatccccaagttaggctcactccttttacaaaagtgccattttatg
cttgagaggTATGTACTAAATGTTAAATCTAGTATGAATTAGGATCCTAA
CCtaagaatgtgctgtaagaatattttaggatgattttcccaaaaaaagt
taagaatatccatgatgaaatggatttacaccattcttataaaaaaaagc
gtgtaattttaatagatcgtcactatttgtgttctgaataattgtttaat
ggtcacgctcacgtaaatatcaattatatatgtcttaaatgcataactag
gtaggtccataaaagtatcacttgttgatTTCACATTTATCAGCATTAAT
TACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCC
AATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCTTTTTTAAC
AGTGAAtacctttaagggaagaaattccCACTGAATTTGATCTTGCGTTT
TTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCTCAATCAAGACACA
AGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGCGAATAGAG
CTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGCTTCAATTA
GGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCTATAGATTA
TTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTCTTTAGGAA
GCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACAC
AACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAG
ATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAACTTGGCAG
AACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAATATCCAGA
AATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTCAAGTCAAA
AGAGCAACCACTGTTATAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gtaggtccataaaagtatcacttgttgatTTCACATTTATCAGCATTAAT
TACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTCTCC
AATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCTTTTTTAAC
AGTGAAtacctttaagggaagaaattccCACTGAATTTGATCTTGCGTTT
TTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCAATCAAGACACAAG
CCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGCGAATAGAGCT
TTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGCTTCAATTAGG
TTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCTATAGATTATT
TACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTCTTTAGGAAGC
ACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACACAA
CAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAGAT
TGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAACTTGGCAGAA
CTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAATATCCAGAAA
TATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTCAAGTCAAAAG
AGCAACCACTGTTATAGGGGGCACAGCAAATTGGGGCTGTTATTTTTAAG
GGATACAGTCTTATTTCACCTTTGTAAATAAATCTTTGATTATACTTTTT
CTATTTATCAATTTTGACAtttaaaaggaagaaattttggcgggaattta
atttgggggatggccaaaaaagttttttcagagggaatttaatttggcgg
ttggacgaaaaaactaaatttggcgggaatttaatttggcggtcgcttaa
aaaaattaaccttaagatggcgtcaaaacagtgaaaaaatagcaaaaaca
ccttaaaagagatcatattttcaaaatgtttaatttggcgggaatttaat
ttggcggatggcggaaaaaagaaattttggcgggaacttaatttagcgga
tttcagccaaatccgccaaattttctttccgccaaaatttcttcctttaa
ggtagtgtGGGCCAACACTGGAGCTTCCACTTTGTTACAAACCTTGATAA
TGACTACCCCTGCCTGTATTTATATTACAGTGAAATAAATTGAATCACAA
TAAGTGctcaagaaaattcgaaaaaattcaagcgaaatatcaagaaataa
agaactatCTGACAATTGCCACATGGTGTTTCGAACAGCTCTTCCACTTT
TATTTTAGACTGGACGATCTCGTGGATTTGCATTTATCAATATGGAATCT
ATAAACGGTGCTGCAGATGTAAGGAACTTTTCTTTATTAGAACAAAAGCC
AAACACCAACAAGGGCCGGTTATTTTTAACTGAGATTTTAATAGACTGAT
AGACACATGGTTGATGACAAAAAGTATAAatttaaagtttcttttgcaCG
GGAAACCTGACAAAACTGCATTTGTTTTTCATTACAGGCCAAAGAACGTT
TAAATGGTGCAGAACTTGATGGACGACGTATTCGTGTAGATTACTCAATC
ACGCAACGTGCACACACTCCAACTCCTGGTGTTTACATGGGACGACCAAC
AAAGTAAAAAGCAATCACTTTCTTTTCTTCTGTAGCATTTACAGTGTCAT
ACTTATCGGGGTGGGGGGGGGAGGGGCAGGTAGTCCCAATGAAATAAGAT
ATGGCGAAAAGACCATATTCATTTCCCTAATGAATTCTTGAATTGATAAC
AGACAATCCTTACAGCTACTAGAAGAACtaacatgctcatttttttcTGC
TTTTAGACGAAGTAGTTATCGTGGCGGCGGTGGTGGNNNNNNNNNNNNNN
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ggtgtttttttcattttttgaaaattttgttttttggggcctggggacga
gtttcagccaaaacggacaaagtatatttgctacctatttgaaatgttac
aattgggccttctaataacgggaaaatctgaagttgagcccagtgcggtg
cgcacgttcgactatttccCTAATGAATTCTTGAATTGATAACAGACCAT
CCTTACAGCTACTAGAAAAACtaacatgctcatttttttcTGCTTTTAGA
CGAAGTAGTTATCGTggcggtggtggtggtggtggtagtGGGCGTTACAG
TGGTGGCGCTGGCGGAGGCAGATCCAGCAGGCGTTCGTACTCTAGATCAA
GATCCAGATCCAGATCCAGATCACCTTACTGTACGTATTCTGAGCATCTT
AGAATGTTCATTAAATCCGAGATAATTATTTTAGTTTTGCACAGTTTTCC
TCAAAATCTCCACTGGATGTCTTTTAGGTTTTATTTTAATAAGGTTAGCT
TGTCACCAAAAAGATTTACCACCTCAGAAAAAAATTGGGATCAATATTAG
AAAAGgaaactattttattttttatacgtTTGACTTTCTTTTACAGATCG
CTAGTCTGGCGTTTGGATTCATTGACGGTATCGAAAAACGTATTAAAAAT
GTGATCTCGTTTATTGGAAAGAAACTTGTAATCGTCGACAACCGGACAAG
CTGCTCAACAACACGAAAGTGCCTTCGTGCAAAACCATAAACTCTGTTAG
AGATTGTCTAGGCTATTTCGATGCCTTATAaagagtttttatttttattt
gtagaTAACATATGATGTaagcttttttcaacttttcttttctAGTTTTA
TGGTAAGAAGAGTGAAGATTCATGTCAGAAGGTTTTGAAGATTGAAGTCG
GAAGAGGTCGATCAAGAACGACCACTCTAACCGAACGCTTCTTCAAGAAA
ATCGAAACCCTGGCAATGTAAGATACATGGCCTTTTTTAAAGGGGGGACC
TATTGAGGCGGTCTGGGTCGGCTAGGTGAGATGGGATAAATTCTCGAACA
TCTATTTTCAGCCATATGATTGGTTAAAAACTGTTGTGATGCAATCTGTA
CATCCCACCTAGCTGGGTTAGCCCTTCTCATAAACAACGTCCTTAACTCT
TGAGACTTACAATGttgcaaaattgattttacttGGACATTTAAAAAGAA
CACCTTCATCATACAAAACATGTTTTTACATAGTTTTTTGTGTTATCAAA
ATCCTATCGACTGAAAATTTATCACGTTGTTAATCGaatttttcaatgtt
tcaaCATACCATTTCTTTCAGTCGTGAAGAAAGAAGTaaagaataagaaa
aatttattgccctgaaaatttgaagaaacaaGAAAACGAAATAGAAGAAA
ACCTTTCTGAAACGACTCTAATTCCTTGAAGAAAGAAGTTAAAATTAGAA
GAAAACCTTAGAAGATTGAAGATTTTTCGACCTTATGAAGAAAACCGACA
TTTCTTAACAGGGtcatgaaaatttgaagaatgaAGAGAAGAAATTGTGT
GCTAAGTatgttatttttcaattttaattctaTCTAATTTGTGTTTTTAT
CACTTTCTGATCAGTTAGTTTTTATATCTGGAACATTTCACTTCAACGTT
CTCGGCTAAACGACGATTGTTTACAACACCTACGATGATCGATGGACAAA
AGAGGATGATTTGATGGTGCATTGGATTAACGgatcaattttaaaacttc
agctttctttcttttttgtttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021705XLOC_021705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036754-exon-sc0001508-1491911889:8195..8403TCONS_00036754-exon-sc0001508-1491911889:8195..8403Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:8195..8403TCONS_00036754-exon-sc0001508-1510915933:8195..8403Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:8195..8403TCONS_00036754-exon-sc0001508-1575043694:8195..8403Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1491911889:11159..11228TCONS_00036754-exon-sc0001508-1491911889:11159..11228Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:11159..11228TCONS_00036754-exon-sc0001508-1510915933:11159..11228Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:11159..11228TCONS_00036754-exon-sc0001508-1575043694:11159..11228Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1491911889:13490..13618TCONS_00036754-exon-sc0001508-1491911889:13490..13618Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:13490..13618TCONS_00036754-exon-sc0001508-1510915933:13490..13618Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:13490..13618TCONS_00036754-exon-sc0001508-1575043694:13490..13618Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1491911889:14403..14462TCONS_00036754-exon-sc0001508-1491911889:14403..14462Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:14403..14462TCONS_00036754-exon-sc0001508-1510915933:14403..14462Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:14403..14462TCONS_00036754-exon-sc0001508-1575043694:14403..14462Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1491911889:14632..14747TCONS_00036754-exon-sc0001508-1491911889:14632..14747Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:14632..14747TCONS_00036754-exon-sc0001508-1510915933:14632..14747Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:14632..14747TCONS_00036754-exon-sc0001508-1575043694:14632..14747Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1491911889:16344..16474TCONS_00036754-exon-sc0001508-1491911889:16344..16474Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:16344..16474TCONS_00036754-exon-sc0001508-1510915933:16344..16474Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:16344..16474TCONS_00036754-exon-sc0001508-1575043694:16344..16474Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1491911889:16691..17061TCONS_00036754-exon-sc0001508-1491911889:16691..17061Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:16691..17061TCONS_00036754-exon-sc0001508-1510915933:16691..17061Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:16691..17061TCONS_00036754-exon-sc0001508-1575043694:16691..17061Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1491911889:17416..17869TCONS_00036754-exon-sc0001508-1491911889:17416..17869Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1510915933:17416..17869TCONS_00036754-exon-sc0001508-1510915933:17416..17869Clytia hemisphaericaexon
TCONS_00036754-exon-sc0001508-1575043694:17416..17869TCONS_00036754-exon-sc0001508-1575043694:17416..17869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001508supercontigsc0001508:8195..17869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.10844e-06	1.08854e-07	1.75579e-07	0.189165	0	0	0	0	0	2.85217e-09	0	0	1.17846e-06	0	0	2.54495e-08	0	3.43584e-10	0	0	0.000645445	5.59761e-07	0.000119596	5.82795e-07	0	0	7.98674e-07	0	0	0.0563369
Blast
[Close]
BLAST of TCONS_00036754 vs. Swiss-Prot (Human)
Match: TRA2B (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.092e-41
Identity = 69/106 (65.09%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:  265 HVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIVHDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAHTPTPGVYMGRPT 582
            HVG+R  P    CLGVFGLSLYTTER+++++F KYG +AD  IV+D  + RSRGFAF+  E+++ A +AKER NG ELDGRRIRVD+SIT+R HTPTPG+YMGRPT
Sbjct:  107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPT 212
The following BLAST results are available for this feature:
BLAST of TCONS_00036754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRA2B4.092e-4165.09Transformer-2 protein homolog beta OS=Homo sapiens... [more]
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