TCONS_00036744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036744
Unique NameTCONS_00036744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036744 ID=TCONS_00036744|Name=TCONS_00036744|organism=Clytia hemisphaerica|type=transcript|length=1649bp
tatatatataatataataaaatggaaaataattGCCCCATGACAAGTGAC
TCACGCAATATGATTTAATGTTTTTGTATTAGTATAATGgattagttttt
attttattatagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAG
ATCTAGATCAAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTT
ACAGTAAATCAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGG
AGAAGATCATATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAG
AAGGAGAAGATATAGCAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGT
CTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGAAGCACCACCA
ACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACACAACAGAACG
TGAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAGATTGTCGTA
TTGTTCATGATCATGCTACTGGACGATCTCGTGGATTTGCATTTATCAAT
ATGGAATCTATAAACGGTGCTGCAGATGCCAAAGAACGTTTAAATGGTGC
AGAACTTGATGGACGACGTATTCGTGTAGATTACTCAATCACGCAACGTG
CACACACTCCAACTCCTGGTGTTTACATGGGACGACCAACAAAACGAAGT
AGTTATCGTggcggtggtggtggtggtggtagtGGGCGTTACAGTGGTGG
CGCTGGCGGAGGCAGATCCAGCAGGCGTTCGTACTCTAGATCAAGATCCA
GATCCAGATCCAGATCACCTTACTATCGCTAGTCTGGCGTTTGGATTCAT
TGACGGTATCGAAAAACGTATTAAAAATGTGATCTCGTTTATTGGAAAGA
AACTTGTAATCGTCGACAACCGGACAAGCTGCTCAACAACACGAAAGTGC
CTTCGTGCAAAACCATAAACTCTGTTAGAGATTGTCTAGGCTATTTCGAT
GCCTTATAaagagtttttatttttatttgtagaTAACATATGATGTaagc
ttttttcaacttttcttttctAGTTTTATGGTAAGAAGAGTGAAGATTCA
TGTCAGAAGGTTTTGAAGATTGAAGTCGGAAGAGGTCGATCAAGAACGAC
CACTCTAACCGAACGCTTCTTCAAGAAAATCGAAACCCTGGCAATTCGTG
AAGAAAGAAGTaaagaataagaaaaatttattgccctgaaaatttgaaga
aacaaGAAAACGAAATAGAAGAAAACCTTTCTGAAACGACTCTAATTCCT
TGAAGAAAGAAGTTAAAATTAGAAGAAAACCTTAGAAGATTGAAGATTTT
TCGACCTTATGAAGAAAACCGACATTTCTTAACAGGGtcatgaaaatttg
aagaatgaAGAGAAGAAATTGTGTGCTAAGTatgttatttttcaatttta
attctaTCTAATTTGTGTTTTTATCACTTTCTGATCAGTTAGTTTTTATA
TCTGGAACATTTCACTTCAACGTTCTCGGCTAAACGACGATTGTTTACAA
CACCTACGATGATCGATGGACAAAAGAGGATGATTTGATGGTGCATTGGA
TTAACGgatcaattttaaaacttcagctttctttcttttttgtttttga
Run BLAST on NCBI

transcript from alignment at sc0001508:8086..17869+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036744 ID=TCONS_00036744|Name=TCONS_00036744|organism=Clytia hemisphaerica|type=transcript|length=9784bp|location=Sequence derived from alignment at sc0001508:8086..17869+ (Clytia hemisphaerica)
tatatatataatataataaaatggaaaataattGCCCCATGACAAGTGAC
TCACGCAATATGATTTAATGTTTTTGTATTAGTATAATGgattagttttt
attttattatagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAG
ATCTAGATCAAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTT
ACAGTAAATCAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGG
AGAAGATCATATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAG
AAGGAGAAGATATAGCAGGTTAAATTTTGGATTTGCTTTATActgaacat
ttaaaaaaaaattattttgtgtgcttaataaaatttaaaggATGCAAGGT
TTTTTGACAGTTCCTGTTTATAAAATATGTGAAAACCTTTTATTTTCAGG
GTTCTTTATTCTGCCAAAACTAATTCCAAGTACATAAACtgtgtttttgg
acctaccccggtggaggtcctataaattaatctttgtccgttcgttcgtt
cgttattagctttcctcgtgattggctcattatttttttcagattttttg
cacaaagatgcataactataaacccttgaatgtgatggagccaatttttg
aagaaaaaaattttttgggcaaatctgtgccaaaaaacagcttaaaaaaa
gggttttttggactttgtgaaaaattagatcattaattttttctgatttt
ttgcatgaaagtagggtaccatcataggtaaaatatggcttaagcagatt
tttgcaaaaaaattttgttggctNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNAAAATCAAAATAGATGCAATCGACAACTTGGCCTTCTGCCATCGTT
TCACAACATTGGTCAATGTAATAAAGAAGTTGAGTGACTGTTGATTGCTT
ACCAATAAAACCGTACTGTTTTtcagataaaagattttcttccatAAGAT
GATCCATGATTACTTTTCGTAACACCGACTCCATCATTTTGCATACTACA
GTATAGACAGTATAGATTACTGTATAGATGTTAAACTGACTGGACGGTAG
TTTATGGCTAGGTTGTGAGCACCCTTGTTCTTGTAGATTGGCGTGACATG
CATTcatgtttagacatgaaattttggttgcttggcgcgTTTTTATAGAA
AAACTGGCCAAATtcaatatttttttataagcacattatcaattacttag
gtattagcttttcttgagattggctctttcattctttatgattttttgta
caaagatgcataactataatccctcgaatgtgacggagcctggtttttga
aagaaaaaaaaattgggagcaaatttgggccaaaaaacagctaaaaacag
gttttttggactttgtgaaaaattgaaaaaacgtttttttataagaaaca
aacgactacacgctttttttaaataagaatacactgtataagaatgtcca
tgatgaaaatgaccaaaaaactaagaatatgctaagaatatcaccttCAT
GGAATTTTGttactaaagctaagaatgtcattttaagagcattttcaatt
ataaattatcaattatccccaagttaggctcactccttttacaaaagtgc
cattttatgcttgagaggTATGTACTAAATGTTAAATCTAGTATGAATTA
GGATCCTAACCtaagaatgtgctgtaagaatattttaggatgattttccc
aaaaaaagttaagaatatccatgatgaaatggatttacaccattcttata
aaaaaaagcgtgtaattttaatagatcgtcactatttgtgttctgaataa
ttgtttaatggtcacgctcacgtaaatatcaattatatatgtcttaaatg
cataactaggtaggtccataaaagtatcacttgttgatTTCACATTTATC
AGCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAG
TAGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTC
TTTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAATTTGAT
CTTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCTCAAT
CAAGACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTG
CGAATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGG
CTTCAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGC
TATAGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTT
CTTTAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAG
TTTGTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAA
GGGTTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAA
ACTTGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAA
ATATCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACT
CAAGTCAAAAGAGCAACCACTGTTATAGGGGNNNNNNNNNNNNNNNNNNN
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CATaactaggtaggtccataaaagtatcacttgttgatTTCACATTTATC
AGCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAG
TAGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTC
TTTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAATTTGAT
CTTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCAATCA
AGACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGCG
AATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGCT
TCAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCTA
TAGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTCT
TTAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTT
TGTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGG
GTTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAAC
TTGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAAT
ATCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTCA
AGTCAAAAGAGCAACCACTGTTATAGGGGGCACAGCAAATTGGGGCTGTT
ATTTTTAAGGGATACAGTCTTATTTCACCTTTGTAAATAAATCTTTGATT
ATACTTTTTCTATTTATCAATTTTGACAtttaaaaggaagaaattttggc
gggaatttaatttgggggatggccaaaaaagttttttcagagggaattta
atttggcggttggacgaaaaaactaaatttggcgggaatttaatttggcg
gtcgcttaaaaaaattaaccttaagatggcgtcaaaacagtgaaaaaata
gcaaaaacaccttaaaagagatcatattttcaaaatgtttaatttggcgg
gaatttaatttggcggatggcggaaaaaagaaattttggcgggaacttaa
tttagcggatttcagccaaatccgccaaattttctttccgccaaaatttc
ttcctttaaggtagtgtGGGCCAACACTGGAGCTTCCACTTTGTTACAAA
CCTTGATAATGACTACCCCTGCCTGTATTTATATTACAGTGAAATAAATT
GAATCACAATAAGTGctcaagaaaattcgaaaaaattcaagcgaaatatc
aagaaataaagaactatCTGACAATTGCCACATGGTGTTTCGAACAGCTC
TTCCACTTTTATTTTAGACTGGACGATCTCGTGGATTTGCATTTATCAAT
ATGGAATCTATAAACGGTGCTGCAGATGTAAGGAACTTTTCTTTATTAGA
ACAAAAGCCAAACACCAACAAGGGCCGGTTATTTTTAACTGAGATTTTAA
TAGACTGATAGACACATGGTTGATGACAAAAAGTATAAatttaaagtttc
ttttgcaCGGGAAACCTGACAAAACTGCATTTGTTTTTCATTACAGGCCA
AAGAACGTTTAAATGGTGCAGAACTTGATGGACGACGTATTCGTGTAGAT
TACTCAATCACGCAACGTGCACACACTCCAACTCCTGGTGTTTACATGGG
ACGACCAACAAAGTAAAAAGCAATCACTTTCTTTTCTTCTGTAGCATTTA
CAGTGTCATACTTATCGGGGTGGGGGGGGGAGGGGCAGGTAGTCCCAATG
AAATAAGATATGGCGAAAAGACCATATTCATTTCCCTAATGAATTCTTGA
ATTGATAACAGACAATCCTTACAGCTACTAGAAGAACtaacatgctcatt
tttttcTGCTTTTAGACGAAGTAGTTATCGTGGCGGCGGTGGTGGNNNNN
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atatctgggggtgtttttttcattttttgaaaattttgttttttggggcc
tggggacgagtttcagccaaaacggacaaagtatatttgctacctatttg
aaatgttacaattgggccttctaataacgggaaaatctgaagttgagccc
agtgcggtgcgcacgttcgactatttccCTAATGAATTCTTGAATTGATA
ACAGACCATCCTTACAGCTACTAGAAAAACtaacatgctcatttttttcT
GCTTTTAGACGAAGTAGTTATCGTggcggtggtggtggtggtggtagtGG
GCGTTACAGTGGTGGCGCTGGCGGAGGCAGATCCAGCAGGCGTTCGTACT
CTAGATCAAGATCCAGATCCAGATCCAGATCACCTTACTGTACGTATTCT
GAGCATCTTAGAATGTTCATTAAATCCGAGATAATTATTTTAGTTTTGCA
CAGTTTTCCTCAAAATCTCCACTGGATGTCTTTTAGGTTTTATTTTAATA
AGGTTAGCTTGTCACCAAAAAGATTTACCACCTCAGAAAAAAATTGGGAT
CAATATTAGAAAAGgaaactattttattttttatacgtTTGACTTTCTTT
TACAGATCGCTAGTCTGGCGTTTGGATTCATTGACGGTATCGAAAAACGT
ATTAAAAATGTGATCTCGTTTATTGGAAAGAAACTTGTAATCGTCGACAA
CCGGACAAGCTGCTCAACAACACGAAAGTGCCTTCGTGCAAAACCATAAA
CTCTGTTAGAGATTGTCTAGGCTATTTCGATGCCTTATAaagagttttta
tttttatttgtagaTAACATATGATGTaagcttttttcaacttttctttt
ctAGTTTTATGGTAAGAAGAGTGAAGATTCATGTCAGAAGGTTTTGAAGA
TTGAAGTCGGAAGAGGTCGATCAAGAACGACCACTCTAACCGAACGCTTC
TTCAAGAAAATCGAAACCCTGGCAATGTAAGATACATGGCCTTTTTTAAA
GGGGGGACCTATTGAGGCGGTCTGGGTCGGCTAGGTGAGATGGGATAAAT
TCTCGAACATCTATTTTCAGCCATATGATTGGTTAAAAACTGTTGTGATG
CAATCTGTACATCCCACCTAGCTGGGTTAGCCCTTCTCATAAACAACGTC
CTTAACTCTTGAGACTTACAATGttgcaaaattgattttacttGGACATT
TAAAAAGAACACCTTCATCATACAAAACATGTTTTTACATAGTTTTTTGT
GTTATCAAAATCCTATCGACTGAAAATTTATCACGTTGTTAATCGaattt
ttcaatgtttcaaCATACCATTTCTTTCAGTCGTGAAGAAAGAAGTaaag
aataagaaaaatttattgccctgaaaatttgaagaaacaaGAAAACGAAA
TAGAAGAAAACCTTTCTGAAACGACTCTAATTCCTTGAAGAAAGAAGTTA
AAATTAGAAGAAAACCTTAGAAGATTGAAGATTTTTCGACCTTATGAAGA
AAACCGACATTTCTTAACAGGGtcatgaaaatttgaagaatgaAGAGAAG
AAATTGTGTGCTAAGTatgttatttttcaattttaattctaTCTAATTTG
TGTTTTTATCACTTTCTGATCAGTTAGTTTTTATATCTGGAACATTTCAC
TTCAACGTTCTCGGCTAAACGACGATTGTTTACAACACCTACGATGATCG
ATGGACAAAAGAGGATGATTTGATGGTGCATTGGATTAACGgatcaattt
taaaacttcagctttctttcttttttgtttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021705XLOC_021705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036744-exon-sc0001508-1491911889:8086..8403TCONS_00036744-exon-sc0001508-1491911889:8086..8403Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:8086..8403TCONS_00036744-exon-sc0001508-1510915933:8086..8403Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:8086..8403TCONS_00036744-exon-sc0001508-1575043694:8086..8403Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1491911889:11159..11228TCONS_00036744-exon-sc0001508-1491911889:11159..11228Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:11159..11228TCONS_00036744-exon-sc0001508-1510915933:11159..11228Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:11159..11228TCONS_00036744-exon-sc0001508-1575043694:11159..11228Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1491911889:11542..11670TCONS_00036744-exon-sc0001508-1491911889:11542..11670Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:11542..11670TCONS_00036744-exon-sc0001508-1510915933:11542..11670Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:11542..11670TCONS_00036744-exon-sc0001508-1575043694:11542..11670Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1491911889:14403..14462TCONS_00036744-exon-sc0001508-1491911889:14403..14462Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:14403..14462TCONS_00036744-exon-sc0001508-1510915933:14403..14462Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:14403..14462TCONS_00036744-exon-sc0001508-1575043694:14403..14462Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1491911889:14632..14747TCONS_00036744-exon-sc0001508-1491911889:14632..14747Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:14632..14747TCONS_00036744-exon-sc0001508-1510915933:14632..14747Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:14632..14747TCONS_00036744-exon-sc0001508-1575043694:14632..14747Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1491911889:16344..16474TCONS_00036744-exon-sc0001508-1491911889:16344..16474Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:16344..16474TCONS_00036744-exon-sc0001508-1510915933:16344..16474Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:16344..16474TCONS_00036744-exon-sc0001508-1575043694:16344..16474Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1491911889:16691..17061TCONS_00036744-exon-sc0001508-1491911889:16691..17061Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:16691..17061TCONS_00036744-exon-sc0001508-1510915933:16691..17061Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:16691..17061TCONS_00036744-exon-sc0001508-1575043694:16691..17061Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1491911889:17416..17869TCONS_00036744-exon-sc0001508-1491911889:17416..17869Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1510915933:17416..17869TCONS_00036744-exon-sc0001508-1510915933:17416..17869Clytia hemisphaericaexon
TCONS_00036744-exon-sc0001508-1575043694:17416..17869TCONS_00036744-exon-sc0001508-1575043694:17416..17869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001508supercontigsc0001508:8086..17869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.9441	16.9796	36.2594	34.4538	7.6485	2.9079	1.93422	2.88292	9.41704	7.38374	11.0921	8.34951	7.02123	8.82775	9.4385	10.8145	12.9572	12.6442	1.22217	2.77149	12.9094	10.76	16.4291	15.0132	5.41578	5.64995	13.816	9.79709	13.636	9.83646
Blast
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BLAST of TCONS_00036744 vs. Swiss-Prot (Human)
Match: TRA2B (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.440e-41
Identity = 69/106 (65.09%), Postives = 86/106 (81.13%), Query Frame = 2 
Query:  374 HVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIVHDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAHTPTPGVYMGRPT 691
            HVG+R  P    CLGVFGLSLYTTER+++++F KYG +AD  IV+D  + RSRGFAF+  E+++ A +AKER NG ELDGRRIRVD+SIT+R HTPTPG+YMGRPT
Sbjct:  107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPT 212
The following BLAST results are available for this feature:
BLAST of TCONS_00036744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRA2B5.440e-4165.09Transformer-2 protein homolog beta OS=Homo sapiens... [more]
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