TCONS_00036743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036743
Unique NameTCONS_00036743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036743 ID=TCONS_00036743|Name=TCONS_00036743|organism=Clytia hemisphaerica|type=transcript|length=1074bp
atcttatcttactattaaatcaaatataaaaagcaaaagacttgtaaaca
taaatattaaaacaagtaaaatttagttttcatttatatCAGTACtcgta
tattttttttattgacttctctctacggggacgggagaacaatgtttttg
tttttgtttatcttgggacctgaagtgttaggggacctagcacaatgcaa
ttttttggggggagctaaattgttggggggtgttggggggaccttacttt
gttggggggagctagaaacctggctgaagctatgccTCTTTGCAGTGCTT
TAGAAATATAGATGGGAAgcttgtatacttttttttggtgcacccggtat
atatatataatataataaaatggaaaataattGCCCCATGACAAGTGACT
CACGCAATATGATTTAATGTTTTTGTATTAGTATAATGgattagttttta
ttttattatagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAGA
TCTAGATCAAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTTA
CAGTAAATCAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGGA
GAAGATCATATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAGA
AGGAGAAGATATAGCAGGTCTAGAAGTAGAAGTAGAAGCAGAAGTAGGTC
TCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGAAGCACCACCAA
CTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTTGTACACAACAGAACGT
GAAGTTAAAGATATGTTTGAGAAATATGGAAGGGTTGCAGATTGTCGTAT
TGTTCATGATCATGCTACTGGACGATCTCGTGGATTTGCATTTATCAATA
TGGAATCTATAAACGGTGCTGCAGATGCCAAAGAACGTTTAAATGGTGCA
GAACTTGATGGACGACGTATTCGTGTAGATTACTCAATCACGCAACGTGC
ACACACTCCAACTCCTGGTGTTTACATGGGACGACCAACAAAACGAAGTA
GTTATCGTGGCGGCGGTGGTGGNN
Run BLAST on NCBI

transcript from alignment at sc0001508:7737..14982+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036743 ID=TCONS_00036743|Name=TCONS_00036743|organism=Clytia hemisphaerica|type=transcript|length=7246bp|location=Sequence derived from alignment at sc0001508:7737..14982+ (Clytia hemisphaerica)
atcttatcttactattaaatcaaatataaaaagcaaaagacttgtaaaca
taaatattaaaacaagtaaaatttagttttcatttatatCAGTACtcgta
tattttttttattgacttctctctacggggacgggagaacaatgtttttg
tttttgtttatcttgggacctgaagtgttaggggacctagcacaatgcaa
ttttttggggggagctaaattgttggggggtgttggggggaccttacttt
gttggggggagctagaaacctggctgaagctatgccTCTTTGCAGTGCTT
TAGAAATATAGATGGGAAgcttgtatacttttttttggtgcacccggtat
atatatataatataataaaatggaaaataattGCCCCATGACAAGTGACT
CACGCAATATGATTTAATGTTTTTGTATTAGTATAATGgattagttttta
ttttattatagcCAAGATCTCGTTCAAGATCACCCAAATCAAGGTCAAGA
TCTAGATCAAGGTCACGCTCAAGGTCAAGATCTCCAAAGAGACGCTCTTA
CAGTAAATCAAGGTCTCGTTCTCGTTCTCGTTCAAGAAGTGCACCAAGGA
GAAGATCATATTCTAGATCAAGATCCAGAAGTCGATCCAGATCACTAAGA
AGGAGAAGATATAGCAGGTTAAATTTTGGATTTGCTTTATActgaacatt
taaaaaaaaattattttgtgtgcttaataaaatttaaaggATGCAAGGTT
TTTTGACAGTTCCTGTTTATAAAATATGTGAAAACCTTTTATTTTCAGGG
TTCTTTATTCTGCCAAAACTAATTCCAAGTACATAAACtgtgtttttgga
cctaccccggtggaggtcctataaattaatctttgtccgttcgttcgttc
gttattagctttcctcgtgattggctcattatttttttcagattttttgc
acaaagatgcataactataaacccttgaatgtgatggagccaatttttga
agaaaaaaattttttgggcaaatctgtgccaaaaaacagcttaaaaaaag
ggttttttggactttgtgaaaaattagatcattaattttttctgattttt
tgcatgaaagtagggtaccatcataggtaaaatatggcttaagcagattt
ttgcaaaaaaattttgttggctNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNAAAATCAAAATAGATGCAATCGACAACTTGGCCTTCTGCCATCGTTT
CACAACATTGGTCAATGTAATAAAGAAGTTGAGTGACTGTTGATTGCTTA
CCAATAAAACCGTACTGTTTTtcagataaaagattttcttccatAAGATG
ATCCATGATTACTTTTCGTAACACCGACTCCATCATTTTGCATACTACAG
TATAGACAGTATAGATTACTGTATAGATGTTAAACTGACTGGACGGTAGT
TTATGGCTAGGTTGTGAGCACCCTTGTTCTTGTAGATTGGCGTGACATGC
ATTcatgtttagacatgaaattttggttgcttggcgcgTTTTTATAGAAA
AACTGGCCAAATtcaatatttttttataagcacattatcaattacttagg
tattagcttttcttgagattggctctttcattctttatgattttttgtac
aaagatgcataactataatccctcgaatgtgacggagcctggtttttgaa
agaaaaaaaaattgggagcaaatttgggccaaaaaacagctaaaaacagg
ttttttggactttgtgaaaaattgaaaaaacgtttttttataagaaacaa
acgactacacgctttttttaaataagaatacactgtataagaatgtccat
gatgaaaatgaccaaaaaactaagaatatgctaagaatatcaccttCATG
GAATTTTGttactaaagctaagaatgtcattttaagagcattttcaatta
taaattatcaattatccccaagttaggctcactccttttacaaaagtgcc
attttatgcttgagaggTATGTACTAAATGTTAAATCTAGTATGAATTAG
GATCCTAACCtaagaatgtgctgtaagaatattttaggatgattttccca
aaaaaagttaagaatatccatgatgaaatggatttacaccattcttataa
aaaaaagcgtgtaattttaatagatcgtcactatttgtgttctgaataat
tgtttaatggtcacgctcacgtaaatatcaattatatatgtcttaaatgc
ataactaggtaggtccataaaagtatcacttgttgatTTCACATTTATCA
GCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGT
AGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCT
TTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAATTTGATC
TTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCTCAATC
AAGACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGC
GAATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGC
TTCAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCT
ATAGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTC
TTTAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGT
TTGTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAG
GGTTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAA
CTTGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAA
TATCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTC
AAGTCAAAAGAGCAACCACTGTTATAGGGGNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATGC
ATaactaggtaggtccataaaagtatcacttgttgatTTCACATTTATCA
GCATTAATTACCTTCATCTTAGGTCTAGAAGTAGAAGTAGAAGCAGAAGT
AGGTCTCCAATGTCATCTAGAAAAAGACATGTAGGAAGTAGGGTAAGTCT
TTTTTAACAGTGAAtacctttaagggaagaaattccCACTGAATTTGATC
TTGCGTTTTTTTCCTTGAATTGCGTTTTTGGTCAAATATTACTCAATCAA
GACACAAGCCACCTTGAGTGGATAATTTTTGCGTGGATTTGTTTTTGCGA
ATAGAGCTTTTAAGTTTTTCGTGTGGACTTATTTTTGCGAAATGGGGCTT
CAATTAGGTTTACTGATTTCAATATCGGTGAAGCTTAAGTTGCTAGCTAT
AGATTATTTACTAAGGAACCTGACATAACCAGTCTAGTGAAATTTTTCTT
TAGGAAGCACCACCAACTGGAAAATGTTTGGGTGTATTTGGTCTCAGTTT
GTACACAACAGAACGTGAAGTTAAAGATATGTTTGAGAAATATGGAAGGG
TTGCAGATTGTCGTATTGTTCATGATCATGCTGTAAGTATACAATAAACT
TGGCAGAACTTGTAAGTAGAGGTTGAGAATTTCACACTGGGTGGTAAATA
TCCAGAAATATGTCTGTCATTTGAAAATTCACCGAATGTGGATCACTCAA
GTCAAAAGAGCAACCACTGTTATAGGGGGCACAGCAAATTGGGGCTGTTA
TTTTTAAGGGATACAGTCTTATTTCACCTTTGTAAATAAATCTTTGATTA
TACTTTTTCTATTTATCAATTTTGACAtttaaaaggaagaaattttggcg
ggaatttaatttgggggatggccaaaaaagttttttcagagggaatttaa
tttggcggttggacgaaaaaactaaatttggcgggaatttaatttggcgg
tcgcttaaaaaaattaaccttaagatggcgtcaaaacagtgaaaaaatag
caaaaacaccttaaaagagatcatattttcaaaatgtttaatttggcggg
aatttaatttggcggatggcggaaaaaagaaattttggcgggaacttaat
ttagcggatttcagccaaatccgccaaattttctttccgccaaaatttct
tcctttaaggtagtgtGGGCCAACACTGGAGCTTCCACTTTGTTACAAAC
CTTGATAATGACTACCCCTGCCTGTATTTATATTACAGTGAAATAAATTG
AATCACAATAAGTGctcaagaaaattcgaaaaaattcaagcgaaatatca
agaaataaagaactatCTGACAATTGCCACATGGTGTTTCGAACAGCTCT
TCCACTTTTATTTTAGACTGGACGATCTCGTGGATTTGCATTTATCAATA
TGGAATCTATAAACGGTGCTGCAGATGTAAGGAACTTTTCTTTATTAGAA
CAAAAGCCAAACACCAACAAGGGCCGGTTATTTTTAACTGAGATTTTAAT
AGACTGATAGACACATGGTTGATGACAAAAAGTATAAatttaaagtttct
tttgcaCGGGAAACCTGACAAAACTGCATTTGTTTTTCATTACAGGCCAA
AGAACGTTTAAATGGTGCAGAACTTGATGGACGACGTATTCGTGTAGATT
ACTCAATCACGCAACGTGCACACACTCCAACTCCTGGTGTTTACATGGGA
CGACCAACAAAGTAAAAAGCAATCACTTTCTTTTCTTCTGTAGCATTTAC
AGTGTCATACTTATCGGGGTGGGGGGGGGAGGGGCAGGTAGTCCCAATGA
AATAAGATATGGCGAAAAGACCATATTCATTTCCCTAATGAATTCTTGAA
TTGATAACAGACAATCCTTACAGCTACTAGAAGAACtaacatgctcattt
ttttcTGCTTTTAGACGAAGTAGTTATCGTGGCGGCGGTGGTGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021705XLOC_021705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036743-exon-sc0001508-1491911889:7737..8403TCONS_00036743-exon-sc0001508-1491911889:7737..8403Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1510915933:7737..8403TCONS_00036743-exon-sc0001508-1510915933:7737..8403Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1575043694:7737..8403TCONS_00036743-exon-sc0001508-1575043694:7737..8403Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1491911889:13109..13178TCONS_00036743-exon-sc0001508-1491911889:13109..13178Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1510915933:13109..13178TCONS_00036743-exon-sc0001508-1510915933:13109..13178Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1575043694:13109..13178TCONS_00036743-exon-sc0001508-1575043694:13109..13178Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1491911889:13490..13618TCONS_00036743-exon-sc0001508-1491911889:13490..13618Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1510915933:13490..13618TCONS_00036743-exon-sc0001508-1510915933:13490..13618Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1575043694:13490..13618TCONS_00036743-exon-sc0001508-1575043694:13490..13618Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1491911889:14403..14462TCONS_00036743-exon-sc0001508-1491911889:14403..14462Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1510915933:14403..14462TCONS_00036743-exon-sc0001508-1510915933:14403..14462Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1575043694:14403..14462TCONS_00036743-exon-sc0001508-1575043694:14403..14462Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1491911889:14632..14747TCONS_00036743-exon-sc0001508-1491911889:14632..14747Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1510915933:14632..14747TCONS_00036743-exon-sc0001508-1510915933:14632..14747Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1575043694:14632..14747TCONS_00036743-exon-sc0001508-1575043694:14632..14747Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1491911889:14951..14982TCONS_00036743-exon-sc0001508-1491911889:14951..14982Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1510915933:14951..14982TCONS_00036743-exon-sc0001508-1510915933:14951..14982Clytia hemisphaericaexon
TCONS_00036743-exon-sc0001508-1575043694:14951..14982TCONS_00036743-exon-sc0001508-1575043694:14951..14982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001508supercontigsc0001508:7737..14982 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.37421	2.97689	8.59598	11.2868	28.6747	28.5366	9.72077	11.8015	3.44442	5.34997	5.25862	4.47479	3.29638	4.24845	3.15726	2.71279	5.32658	5.15588	1.6926	2.32705	5.21738	3.96941	2.92776	3.14144	8.89742	10.6332	4.78842	3.93745	4.15111	3.26895
Blast
[Close]
BLAST of TCONS_00036743 vs. Swiss-Prot (Human)
Match: TRA2B (Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.386e-43
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 3 
Query:  723 HVGSREAPPTGKCLGVFGLSLYTTEREVKDMFEKYGRVADCRIVHDHATGRSRGFAFINMESINGAADAKERLNGAELDGRRIRVDYSITQRAHTPTPGVYMGRPTKRSSYR 1058
            HVG+R  P    CLGVFGLSLYTTER+++++F KYG +AD  IV+D  + RSRGFAF+  E+++ A +AKER NG ELDGRRIRVD+SIT+R HTPTPG+YMGRPT  SS R
Sbjct:  107 HVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR 218
The following BLAST results are available for this feature:
BLAST of TCONS_00036743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRA2B9.386e-4364.29Transformer-2 protein homolog beta OS=Homo sapiens... [more]
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