TCONS_00036711 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036711
Unique Name	TCONS_00036711
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	610

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001501:24887..26941-
coding sequence from alignment at sc0001501:24887..26941-

transcript sequence

>TCONS_00036711 ID=TCONS_00036711|Name=TCONS_00036711|organism=Clytia hemisphaerica|type=transcript|length=610bp
NCCTTTGTATTCCGTTCAAGATCACAACGGAAGATTCCGGTCCTTAAAAT
ATACACCTCAACATTTACATTGCATTGCAACGATGTATGGTCCGGTCACA
CCGCCGAGTACTGGTTTACTTGCTATCCAGTCCGTCGCCGATAAAACGGC
GAAGTTCCGTATAGCAGCTACTGGTGTGGTTGTCGATTTGGATAAAAGTA
TAAAAGTCGTGAAAAAACTGAAACTCGTTGGTACGCcactaaaaatcttc
aaaaataccgCATTTGTTAAGGGAATGTTCAATACAGCACTGGAAGTAGC
AAAATTCGAAGGCGCTTCTATAAGAACTGTCAGTGGTATCCGTGgtcaag
tcaaaaaagctttgAAGgctCCTCCAGGTGCTTTTAGAGCAACTTTTGAA
GATAAAATATTAACGAGCGATATTATCTTTTGTCGGACATGGTACCCACT
GGAGTGTCCGAAACTGTACAATCCGTTACCAACGTTACTGCTGCAACGCG
GTATGAAACAAACATGGCGCGGAATGAGAACTGTGGGACAAATACGCAAA
GATGAGAATATACAAAACGTCCAGAATAAAGATTCACTTTATAAAGTAAG
TTTGAGCAGG

Run BLAST on NCBI

protein sequence of TCONS_00036711-protein

>TCONS_00036711-protein ID=TCONS_00036711-protein|Name=TCONS_00036711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
PLYSVQDHNGRFRSLKYTPQHLHCIATMYGPVTPPSTGLLAIQSVADKTA
KFRIAATGVVVDLDKSIKVVKKLKLVGTPLKIFKNTAFVKGMFNTALEVA
KFEGASIRTVSGIRGQVKKALKAPPGAFRATFEDKILTSDIIFCRTWYPL
ECPKLYNPLPTLLLQRGMKQTWRGMRTVGQIRKDENIQNVQNKDSLYKVS
LSR

Run BLAST on NCBI

transcript from alignment at sc0001501:24887..26941-

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036711 ID=TCONS_00036711|Name=TCONS_00036711|organism=Clytia hemisphaerica|type=transcript|length=2055bp|location=Sequence derived from alignment at sc0001501:24887..26941- (Clytia hemisphaerica)
NCCTTTGTATTCCGTTCAAGATCACAACGGAAGATTCCGGTCCTTAAAAT
ATACACCTCAACATTTACATTGCATTGCAACGATGTATGGTAAGTGTTTT
TCATCGATGTTTTCTCGTTTTAATTATTGGTTTAAAGATATTACTCTGTC
AATATTTCATCCCTGGGAGAATCTTATTCGATTTGCCCAATTTAATCCCT
TTTCTTGATAGGTTACTAATATTGAGTTTCAAATCGAAGGCTAGAGGCGT
ATCTTCGACTTTCCCAAGCAAGAAAAAATTAATCTTTAAGACTTGCGTCG
CATTTCGGATGACGGATTGAATCTAACTCTTGTTTTCATGTTTTACATTT
TTTTTTAATATGGCGGTAAATGTTACTTCGAATCCAGAGTTTGTATAAAA
ACCACAAAGGTTGCACAAAGTGCTTCAAACCCTACATAGGAGATCCGATC
TAGCATTCGGCTTTATCTTATTGGTTGTCATATATGTTATCAGTAGAGCA
CTTCTCTCTATTTAGGTCCGGTCACACCGCCGAGTACTGGTTTACTTGCT
ATCCAGTCCGTCGCCGATAAAACGGTAAGAAAGACTTAATGTTACAGATA
TTCACCCTTATAAAGCATCTTCAAGAATGTATGATGTCTTTCTTTCAAAA
GTAAAAGAATAATTTTACGGAGGAATCAACATCTAATCGCCATAAATGGA
ATCTATGTATTGTATTTTTAGGCGAAGTTCCGTATAGCAGCTACTGGTGT
GGTTGTCGATTTGGATAAAAGTATAAAAGTCGTGAAAAAACTGAAACTCG
TTGGTACGCCACTAAAAATCTTCAAAAATACCGCATTTGTTAAGGTAAAG
TTGTCCTGGCATCAGATTGTTCTTTGCATAGCTCTTACGATCTATTTTCG
ATTTTAGAGCACTGTCGTAGCAACCGAGGAAAAGCCCCAAAGATGGTTTT
TTAAAGACGACTATTCAAAACATTAAAGGCATATAAACTTTTTGCTTGAG
TTCATTGTTTTTAGATGAATTTTTAGCACTGTAGACGTCTAATTTTTCAC
CCCCCCCCCTTCGGCCCAAACCATGGTTGAGGTCTGTATGTTTTATTTGT
ATTTCTATGTTAATATTTGTTGATATTCATTCTTTTCAGGGAATGTTCAA
TACAGCACTGGAAGTAGCAAAATTCGAAGGCGCTTCTATAAGAACTGTCA
GTGGTATCCGTGGTCAAGTCAAAAAAGCTTTGAAGGTGACTGTTTCTGTT
CACACAGATCCCATTCATATTTCTCTGAGTAGTTCTGGAAGCCTTCAAGA
AAATCCTTGAAGCCTATAATTGTGTTTTCCTCGGAGAACGGAAAACTATT
TCTCATCTCTGATAATGTTGACTCGATCTTCGATAACTTTAATGTACCTA
TTTTCTGGTTAACGAGACTTTCTTAACTTTTCAATTTTAAATCCCTAATT
CTTAACTTGTTCTTGGTGTTTTCGTTATAGAAGCCTTATGTTCTTATATA
GTTTGTTCCTATCAAAAAACATGTTGACCAATTTATACACTTGAACAATT
ACCCTTAGTCTTTAGTTATTCTGTCATTTAAAGTTTACTTATTTGTTTGA
TTACCAAGATTTTGTTGTTTTTTTTCAGGCTCCTCCAGGTGCTTTTAGAG
CAACTTTTGAAGATAAAATATTAACGAGCGGTATGTATAGTCTTTGTGAT
TTCGGTTATTTCCTTACAAACCAATCAGTTCTTTTTAAAAAATTTCAAGT
ATTGACTTTTGTCGGCAGGATTATCTAACATAGTTCGTATACATGACCCT
ACAATGAATTTACTTTTGAGGCCAAATCGAAATATTTGATTATCTGATCT
CTATCTCTTTCTAGATATTATCTTTTGTCGGACATGGTACCCACTGGAGT
GTCCGAAACTGTACAATCCGTTACCAACGTTACTGCTGCAACGCGGTATG
AAACAAACATGGCGCGGAATGAGAACTGTGGGACAAATACGCAAAGATGA
GAATATACAAAACGTCCAGAATAAAGATTCACTTTATAAAGTAAGTTTGA
GCAGG

Coding sequence (CDS) from alignment at sc0001501:24887..26941-

>TCONS_00036711 ID=TCONS_00036711|Name=TCONS_00036711|organism=Clytia hemisphaerica|type=CDS|length=3654bp|location=Sequence derived from alignment at sc0001501:24887..26941- (Clytia hemisphaerica)
ATATTATCTTTTGTCGGACATGGTACCCACTGGAGTGTCCGAAACTGTAC
AATCCGTTACCAACGTTACTGCTGCAACGCGGTATGAAACAAACATGGCG
CGGAATGAGAACTGTGGGACAAATACGCAAAGATGAGAATATACAAAACG
TCCAGAATAAAGATTCACTTTATAAAGTAAGTTTGAGCAGGGCTCCTCCA
GGTGCTTTTAGAGCAACTTTTGAAGATAAAATATTAACGAGCGGGAATGT
TCAATACAGCACTGGAAGTAGCAAAATTCGAAGGCGCTTCTATAAGAACT
GTCAGTGGTATCCGTGGTCAAGTCAAAAAAGCTTTGAAGGCGAAGTTCCG
TATAGCAGCTACTGGTGTGGTTGTCGATTTGGATAAAAGTATAAAAGTCG
TGAAAAAACTGAAACTCGTTGGTACGCCACTAAAAATCTTCAAAAATACC
GCATTTGTTAAGGTCCGGTCACACCGCCGAGTACTGGTTTACTTGCTATC
CAGTCCGTCGCCGATAAAACGCCTTTGTATTCCGTTCAAGATCACAACGG
AAGATTCCGGTCCTTAAAATATACACCTCAACATTTACATTGCATTGCAA
CGATGTATGATATTATCTTTTGTCGGACATGGTACCCACTGGAGTGTCCG
AAACTGTACAATCCGTTACCAACGTTACTGCTGCAACGCGGTATGAAACA
AACATGGCGCGGAATGAGAACTGTGGGACAAATACGCAAAGATGAGAATA
TACAAAACGTCCAGAATAAAGATTCACTTTATAAAGTAAGTTTGAGCAGG
GCTCCTCCAGGTGCTTTTAGAGCAACTTTTGAAGATAAAATATTAACGAG
CGGGAATGTTCAATACAGCACTGGAAGTAGCAAAATTCGAAGGCGCTTCT
ATAAGAACTGTCAGTGGTATCCGTGGTCAAGTCAAAAAAGCTTTGAAGGC
GAAGTTCCGTATAGCAGCTACTGGTGTGGTTGTCGATTTGGATAAAAGTA
TAAAAGTCGTGAAAAAACTGAAACTCGTTGGTACGCCACTAAAAATCTTC
AAAAATACCGCATTTGTTAAGGTCCGGTCACACCGCCGAGTACTGGTTTA
CTTGCTATCCAGTCCGTCGCCGATAAAACGCCTTTGTATTCCGTTCAAGA
TCACAACGGAAGATTCCGGTCCTTAAAATATACACCTCAACATTTACATT
GCATTGCAACGATGTATGATATTATCTTTTGTCGGACATGGTACCCACTG
GAGTGTCCGAAACTGTACAATCCGTTACCAACGTTACTGCTGCAACGCGG
TATGAAACAAACATGGCGCGGAATGAGAACTGTGGGACAAATACGCAAAG
ATGAGAATATACAAAACGTCCAGAATAAAGATTCACTTTATAAAGTAAGT
TTGAGCAGGGCTCCTCCAGGTGCTTTTAGAGCAACTTTTGAAGATAAAAT
ATTAACGAGCGGGAATGTTCAATACAGCACTGGAAGTAGCAAAATTCGAA
GGCGCTTCTATAAGAACTGTCAGTGGTATCCGTGGTCAAGTCAAAAAAGC
TTTGAAGGCGAAGTTCCGTATAGCAGCTACTGGTGTGGTTGTCGATTTGG
ATAAAAGTATAAAAGTCGTGAAAAAACTGAAACTCGTTGGTACGCCACTA
AAAATCTTCAAAAATACCGCATTTGTTAAGGTCCGGTCACACCGCCGAGT
ACTGGTTTACTTGCTATCCAGTCCGTCGCCGATAAAACGCCTTTGTATTC
CGTTCAAGATCACAACGGAAGATTCCGGTCCTTAAAATATACACCTCAAC
ATTTACATTGCATTGCAACGATGTATGATATTATCTTTTGTCGGACATGG
TACCCACTGGAGTGTCCGAAACTGTACAATCCGTTACCAACGTTACTGCT
GCAACGCGGTATGAAACAAACATGGCGCGGAATGAGAACTGTGGGACAAA
TACGCAAAGATGAGAATATACAAAACGTCCAGAATAAAGATTCACTTTAT
AAAGTAAGTTTGAGCAGGGCTCCTCCAGGTGCTTTTAGAGCAACTTTTGA
AGATAAAATATTAACGAGCGGGAATGTTCAATACAGCACTGGAAGTAGCA
AAATTCGAAGGCGCTTCTATAAGAACTGTCAGTGGTATCCGTGGTCAAGT
CAAAAAAGCTTTGAAGGCGAAGTTCCGTATAGCAGCTACTGGTGTGGTTG
TCGATTTGGATAAAAGTATAAAAGTCGTGAAAAAACTGAAACTCGTTGGT
ACGCCACTAAAAATCTTCAAAAATACCGCATTTGTTAAGGTCCGGTCACA
CCGCCGAGTACTGGTTTACTTGCTATCCAGTCCGTCGCCGATAAAACGCC
TTTGTATTCCGTTCAAGATCACAACGGAAGATTCCGGTCCTTAAAATATA
CACCTCAACATTTACATTGCATTGCAACGATGTATGATATTATCTTTTGT
CGGACATGGTACCCACTGGAGTGTCCGAAACTGTACAATCCGTTACCAAC
GTTACTGCTGCAACGCGGTATGAAACAAACATGGCGCGGAATGAGAACTG
TGGGACAAATACGCAAAGATGAGAATATACAAAACGTCCAGAATAAAGAT
TCACTTTATAAAGTAAGTTTGAGCAGGGCTCCTCCAGGTGCTTTTAGAGC
AACTTTTGAAGATAAAATATTAACGAGCGGGAATGTTCAATACAGCACTG
GAAGTAGCAAAATTCGAAGGCGCTTCTATAAGAACTGTCAGTGGTATCCG
TGGTCAAGTCAAAAAAGCTTTGAAGGCGAAGTTCCGTATAGCAGCTACTG
GTGTGGTTGTCGATTTGGATAAAAGTATAAAAGTCGTGAAAAAACTGAAA
CTCGTTGGTACGCCACTAAAAATCTTCAAAAATACCGCATTTGTTAAGGT
CCGGTCACACCGCCGAGTACTGGTTTACTTGCTATCCAGTCCGTCGCCGA
TAAAACGCCTTTGTATTCCGTTCAAGATCACAACGGAAGATTCCGGTCCT
TAAAATATACACCTCAACATTTACATTGCATTGCAACGATGTATGATATT
ATCTTTTGTCGGACATGGTACCCACTGGAGTGTCCGAAACTGTACAATCC
GTTACCAACGTTACTGCTGCAACGCGGTATGAAACAAACATGGCGCGGAA
TGAGAACTGTGGGACAAATACGCAAAGATGAGAATATACAAAACGTCCAG
AATAAAGATTCACTTTATAAAGTAAGTTTGAGCAGGGCTCCTCCAGGTGC
TTTTAGAGCAACTTTTGAAGATAAAATATTAACGAGCGGGAATGTTCAAT
ACAGCACTGGAAGTAGCAAAATTCGAAGGCGCTTCTATAAGAACTGTCAG
TGGTATCCGTGGTCAAGTCAAAAAAGCTTTGAAGGCGAAGTTCCGTATAG
CAGCTACTGGTGTGGTTGTCGATTTGGATAAAAGTATAAAAGTCGTGAAA
AAACTGAAACTCGTTGGTACGCCACTAAAAATCTTCAAAAATACCGCATT
TGTTAAGGTCCGGTCACACCGCCGAGTACTGGTTTACTTGCTATCCAGTC
CGTCGCCGATAAAACGCCTTTGTATTCCGTTCAAGATCACAACGGAAGAT
TCCGGTCCTTAAAATATACACCTCAACATTTACATTGCATTGCAACGATG
TATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021678	XLOC_021678	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036711-protein	TCONS_00036711-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001501	supercontig	sc0001501:24887..26941 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.0884	26.0681	9.11332	8.65259	37.147	30.6775	28.4937	26.1844	21.5711	22.9516	23.4522	18.4516	26.3636	29.0243	27.2408	33.3778	30.1258	29.2419	4.78368	6.37997	26.8105	26.4656	36.377	27.4627	29.4381	26.8837	7.22944	6.66388	28.5091	33.2518

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007034	BMS1_TSR1_C

Blast

[Close]

BLAST of TCONS_00036711 vs. Swiss-Prot (Human)
Match: BMS1 (Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.452e-74
Identity = 136/198 (68.69%), Postives = 158/198 (79.80%), Query Frame = 2

Query:    2 PLYSVQDHNGRFRSLKYTPQHLHCIATMYGPVTPPSTGLLAIQSVADKTAKFRIAATGXXXXXXXXXXXXXXXXXXXXXXXIFKNTAFVKGMFNTALEVAKFEGASIRTVSGIRGQVKKALKAPPGAFRATFEDKILTSDIIFCRTWYPLECPKLYNPLPTLLLQRGMKQTWRGMRTVGQIRKDENIQNVQNKDSLYK 595
            PLY ++DHNGR R LKYTPQH+HC A  +GP+TP  TG LAIQSV+     FRIAATGVV+DLDKSIK+VKKLKL G P KIFKNT+F+KGMFN+ALEVAKFEGA IRTVSGIRGQ+KKAL+AP GAFRA+FEDK+L SDI+F RTWYP+  P  YNP+ +LL   G K TW GMRT GQ+R    ++   NKDSLYK
Sbjct:  955 PLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYK 1152

The following BLAST results are available for this feature:

BLAST of TCONS_00036711 vs. Swiss-Prot (Human)

BLAST of TCONS_00036711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BMS1	3.452e-74	68.69	Ribosome biogenesis protein BMS1 homolog OS=Homo s...	[more]

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TCONS_00036711 (transcript) - C. hemisphaerica