TCONS_00036711-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036711-protein
Unique NameTCONS_00036711-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036711-protein ID=TCONS_00036711-protein|Name=TCONS_00036711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
PLYSVQDHNGRFRSLKYTPQHLHCIATMYGPVTPPSTGLLAIQSVADKTA
KFRIAATGVVVDLDKSIKVVKKLKLVGTPLKIFKNTAFVKGMFNTALEVA
KFEGASIRTVSGIRGQVKKALKAPPGAFRATFEDKILTSDIIFCRTWYPL
ECPKLYNPLPTLLLQRGMKQTWRGMRTVGQIRKDENIQNVQNKDSLYKVS
LSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021678XLOC_021678Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036711TCONS_00036711Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007034BMS1_TSR1_C
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalSMARTSM01362DUF663_2coord: 1..150
e-value: 1.4E-28
score: 111.0
IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalPFAMPF04950RIBIOP_Ccoord: 1..150
e-value: 1.5E-55
score: 188.6
NoneNo IPR availableGENE3D2.40.10.190coord: 79..148
e-value: 7.6E-9
score: 35.2

Blast
[Close]
BLAST of TCONS_00036711-protein vs. Swiss-Prot (Human)
Match: BMS1 (Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 9.241e-91
Identity = 136/198 (68.69%), Postives = 158/198 (79.80%), Query Frame = 0 
Query:    1 PLYSVQDHNGRFRSLKYTPQHLHCIATMYGPVTPPSTGLLAIQSVADKTAKFRIAATGVVVDLDKSIKVVKKLKLVGTPLKIFKNTAFVKGMFNTALEVAKFEGASIRTVSGIRGQVKKALKAPPGAFRATFEDKILTSDIIFCRTWYPLECPKLYNPLPTLLLQRGMKQTWRGMRTVGQIRKDENIQNVQNKDSLYK 198
            PLY ++DHNGR R LKYTPQH+HC A  +GP+TP  TG LAIQSV+     FRIAATGVV+DLDKSIK+VKKLKL G P KIFKNT+F+KGMFN+ALEVAKFEGA IRTVSGIRGQ+KKAL+AP GAFRA+FEDK+L SDI+F RTWYP+  P  YNP+ +LL   G K TW GMRT GQ+R    ++   NKDSLYK
Sbjct:  955 PLYYIEDHNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYK 1152
The following BLAST results are available for this feature:
BLAST of TCONS_00036711-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BMS19.241e-9168.69Ribosome biogenesis protein BMS1 homolog OS=Homo s... [more]
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