TCONS_00036704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036704
Unique NameTCONS_00036704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036704 ID=TCONS_00036704|Name=TCONS_00036704|organism=Clytia hemisphaerica|type=transcript|length=1192bp
AACAATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATTCAGTCAAC
GTTTTAGCAAAGCTGGCAGAGCACCTACCGAAAGATGTGGATGTTATGAA
TAAATTGGCAACCTCGTATTTGATTATGGGCTCCAATCGTAAAGCATTTG
ATATTCACAAAAAGGTCATATCAGTGGACCCAGGGAATGGTATTGCAAAC
GCGAATATCGGTTACATCCTGAAAGCGCTACAGAAGTATCAAGAAGCTAT
TCCTTATCTGGAGGCTGGAATTGAAAGCGAAGATCCGGAAACAAACCAAG
CCAAATTTTCCTTGGTGAGGCATACACAAAGTCTGGTCGAACAGATGACG
CATGGAAACTATACCATCAAGGTGCTGAACGCGGCTTCTTCATGTCGGCA
GCTCAACGATCTACAGAAAATGCAGAATCTAAACTTCGAGCACAACCTTG
GTGGACCGTTGAACAATCTGGTTACGAAAAAGAGATTAGGAAGTTGGAAT
ATTACTGGAAAACGATGCGTGatgaagcaaataaaattttgaaacaaaac
aaagacCGTTTCCCACTGGAAGACGAAGGGCTCTTAGATACAGGGGACTG
GAGACAATTGACATTGGATCAACGTggtcaacaaaacaaaaagaattgcC
AACTTGTACCAAAGACGTGTGAGATCATCAGTCAATTCAAGCAAGCTACT
GGAAACATAAGAGGACAGatTAAATTTTCGATCATGACACCTGGCACACA
CGTATGGCCGCATACTGGACCAACCAATTGTCGTTTGAGAGCACACTTGG
GTTTAAGCATACCGAAAGGCGTTGAAATCCGGGTTGGCAGTGAAACTAGG
AGTTGGGAAAATGGCAAAGTATTGATTTTTGATGATTCCTTTGATCATGA
AGTTTGGCATCGTGGAACAGAATCAAGATTGATTTTGATAATCGATTTTT
GGCATCCTGATTTACCGTTATGGGAAAGACAAAGTTTAGCTCCTATTTAG
ATTTTCTTCTAAAGAactagattttatttttgaattctaatttttaactc
aaatttccATTGAGTTGTGAGGTTTCCTTAGTATTCAAATCAAGGACAAA
ACTATGTACACTAAGGACAACCAGGGTGTACTTGATAATCCCTAAATTTT
TAAGAGTAATTAGGTATAAACTATGGATAATCTGGAGCAGCC
Run BLAST on NCBI

protein sequence of TCONS_00036704-protein

>TCONS_00036704-protein ID=TCONS_00036704-protein|Name=TCONS_00036704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MSAAQRSTENAESKLRAQPWWTVEQSGYEKEIRKLEYYWKTMRDEANKIL
KQNKDRFPLEDEGLLDTGDWRQLTLDQRGQQNKKNCQLVPKTCEIISQFK
QATGNIRGQIKFSIMTPGTHVWPHTGPTNCRLRAHLGLSIPKGVEIRVGS
ETRSWENGKVLIFDDSFDHEVWHRGTESRLILIIDFWHPDLPLWERQSLA
PI
Run BLAST on NCBI

transcript from alignment at sc0001501:4..12183+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036704 ID=TCONS_00036704|Name=TCONS_00036704|organism=Clytia hemisphaerica|type=transcript|length=12180bp|location=Sequence derived from alignment at sc0001501:4..12183+ (Clytia hemisphaerica)
AACAATCTGAGCGGCTTATATTTTTTGGTAAAGGACGAGATTCAGTCAAC
GTTTTAGCAAAGCTGGCAGAGCACCTACCGAAAGATGTGGATGTTATGAA
TAAATTGGCAACCTCGTATTTGATTATGGGCTCCAATCGTAAAGCATTTG
ATATTCACAAAAAGGTGAAACTCGTTAACTCCTTGACGTCCCACCAGCAA
AACCTTGTTCTCTCAGGAGATATTTTCGGCTCTCAGTAGTTTTGATTGAG
GActaaagagctttccaacggtaccaaACATTTAGGGTTTCGGTACCACC
AAAGCTGAGATGGTTCAATTCAAAGTTAAAGCATtgaaaaagccattttt
ttgcttattgaGAACATCAAGGAgttaattattttgaaaatactaTATTT
GAAGCCGTCAATGGGCCTgagagaaaatgaaatttccctAGGCCAGATAG
ATcccttttgattatttttgtccaatttttttgctagggggggggcgtac
gggtttgtcGGTGTGTCGGTATTGACCCTTTTTTGCGTCGGTGTTACGGT
GTTTTAAGTAAAAAGTGTCGCTATTTCGGTGTTGGACATGCCTTGCGGTG
AcggtaaaattgattttttgggtcggtatttcggtgattCGAGAAATACT
GGCGGCGAATCTGCATATTTCAAAGGATCTCATAAAGTTTTTGAATCTGC
ATTTTCAGCTATTGAATATCTTATCTATACAGGAATTGTAGCTATGACGA
GTAGATGTAGCTATGACGAGTAGAATTGTAGCTATAATATAGCTATTTTT
GTAGCTACCCTGTCTCATcctctttttaaaattgtgtGCATAATGGTGTT
TCTTAACCACTTCTTTACGGGAAATGTGcactttatgaaaaaaatcataa
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AGCCAGGTCGCTACTGAACAAGAGCTCTTTTGCGGCGCCCTTTTCTAACG
GTGCTTTCGGCTAAGGTAGATTTACTTCTAATAACGTTCAAAAAGATCTC
TTTTAGTTAAACAAGAGgacaaaaatgggaaaattttctccgtttgggca
aaccatggttgcgcctagCCTCCTCCATTACTTTATACATTCAGATATCT
CTTTTGTTCCCTCGTTTTTGCaaagatcttttaaaaactttttaaatgtt
tttcttcaaagtcATCTAAAGTAagcactaaagtaaaaatagcATTTTAA
ACCCTTCAAAGTGTTCCCTAAAAATTCTTGATTTGTTTATCCACTAGTCG
TtgaaaaactgagctttaaAGATTTGAAACCCTTGAATCAGCGATAGTTT
TCTCcaagaaaaattgaactagtgcTCGTGATATTGAGCATTCGTACTAA
GAATAAAAATCTTAAGCTTGCTCTAAAAGACGTCGGTGTCGGTGTTTTAG
GAAAGGTTTGTCGGTATTACggtgatttaagaaaaatctgtcggtatttc
ggtgttggcaaccctcgtacgccccccacaaTGAGGACAGATttcgaaaa
caatgaaacataCAACCTGTTTTAAGCATATTATCCCATCCTTGCCTCAG
TGACCCGATGGAGGTTTCTCGTAAGTGGGGTTCGAATAAAGGAATTACTG
TATATATCCAACAATAATGGAGAATATAATCCTCTTTCAATATCTTTTGT
TTTCGGCTAGAATATTGCTTCAATTCCAGTCTTTCAGTCTATACAGGGAC
AAGTCAatctcgtccccgtgtattccaggctttatttgcGTTAACGATGG
ACGCTTGAGAATATCTGACGCTATCAGTAAACATAAAAGAAACCGATAAC
ATGATAATGGTGTCAGCATTGTAAACTAACCCTCTTTTTATTCACAGGTC
ATATCAGTGGACCCAGGGAATGGTATTGCAAACGCGAATATCGGTTACAT
CCTGAAAGCGCTACAGAAGTATCAAGAAGCTATTCCTTATCTGGAGGCTG
GAATTGAAAGCGAAGATCCGGAAACAAACCAAGCCAAATTTTCCTTGGTG
AGGCATACACAAAGTCTGGTCGAACAGATGACGTAAgtatttcaaatgtt
tttcttttctttgaacTTCGTTCTTTATACTTCATTTGAGGATAGAGTGG
GTGAAAAAGCGACTCAAAAACCCAATGTACacagaaacaagaaaaaaaga
ctttttgacGAATATTAGTACTGAGGAGGGATACAAATCTTTATTTAACT
ACTAAGAAAACACCTTCGCTAGTGACATAGTCTTTTTTAAGCTTGAGTGT
CCATTTTATCGAAATTGCGTTTGATTACATATTCAAAAGGTCTATGcatg
ttgaaaattgaaagtaaaacccTACTACAGACTATAGAGttgagttattt
aaaaaagaagatacagacccccttctcacagacccggtagaaaactcgat
gggaattgatattcccatattttttatagctagggatttcaattcatttt
cttttcaagtcaaaatatTCAGTGGGGGGCGATAAGAAAAATAGCATAGC
ATTGGGGGAAAGTTtttcaccggggacgatattttggccaatgtTTCCAG
TGAGAAGGGGCCCCAATGAGTCTGTCAGAAGGTGGTGTACTATGATACAA
ATTAACTTCATACCTGGTCTTAGGTGTAAATGGGGCGTAAGCGAAAACAT
CTTCCTCTCCTACGGAGAAATCACATCTTCCTTAAAATagaatcaaataa
aaagaatcttcaatacacgggttgcaaattTATATCAGTGTGGTCAGAAC
ATGTGATTAGTCGGagaagttcacgtgattttattcccatattacttgct
ttacaacttacagctgataactttattagtgtcaataaattcgaaccaat
cagaaataaatgtcatgtaNtaagaatttcaaaaagcgtgatttgtcttc
agacttttttgcaacctgtgtattattGTGGCTCAAATTATTTGATACAC
GAAAGGAGCATAAAGTACTTGTCACAATACGACCGAGCGCCTTCCAATAT
CGAGTTTttgtacagttgactctctctaattcgatctttataggaccaaa
aattttcttcgaattagagaaagattcgacttacagagagtaatttaaac
cactttccagctaaggggaccaatattttagttcgaattacagaaagact
CGAACAataaaggttcgaattagagtgaGTTGACTGTATGTGTGCTTTTC
TTCAACGAAGacggttaaaggttttgttttttaataagagtggtatcgtt
tgcttacttgtCAATCTTAATttgcaagctttttcacattggattgacac
ggatgtggagcaagattggttagaaagaggaaaagaaaaacaattttttg
cttatatcagtataacataacaataagtagacactgtcctgatatgaaat
atgtgtccgATATGAAACGGGAGCACTTATGcagaaataaaacctttaac
tccAAATTTGTCTAGATCCAGATTAACTTacctttcttaaaattttGTTC
TTTCCAGGCATGGAAACTATACCATCAAGGTGCTGAACGCGGCTTCTTCA
TGTCGGCAGCTCAACGATCTACAGAAAATGCAGAATCTAAACTTCGAGCA
CAACCTTGGTGGACCGTTGAACAATCTGGTTACGAAAAAGAGATTAGGTA
CCCTCATCTTCAACCTCCATGTTTTCTGATGAGAGCCTAATAACACTCTG
GTATTCTCTGGCGcccatcagtaacgtaaataaagcttgGAATACAGGGG
GACGACCATCCACGAGAAAAATTCCCACCAAAAGTCCTTCCATTAAGATA
TTGTCTcttaaaataaatctaaatgCTCTGTTCGAGAAGGATTTTCACTC
AGAGTGTATTCTGagatatcaaaaaaataatggCAACTTATAATTTTTCC
GCAGGAAGTTGGAATATTACTGGAAAACGATGCGTGatgaagcaaataaa
attttgaaacaaaacaaagacCGTTTCCCACTGGAAGACGAAGGTATTTG
TTGACTGCGCATTTATTTAGAAAATTATAACCACTCACAAATGCTGAAAG
TAAGAAAATTTAGACATTTAGAAAACTAAAAACACCCAAAGGTTTAAAAA
TCTCTTCATAAGAGAAACGTGGAAGAGAAATTAAAGGATAAAGAAACCTT
TAAACAaccatattgggggggggtaCACTTGGGAAAAAAAGGGGtacggg
gatgtgccgctggtcagggtacctttttcacctccgcatagggtcgcaaa
aacaccaaaatagaaaagtcGGTCCCTCGTagataaccttttttttgaga
ttttgggaaaaaagtagaacattttgagaaaatttgcgagatttagtccc
attcagggtcacttttttcgcaaatttgagtcCCACGTAGGCCCCATTTT
TCTGACCACAGGTGAAACACCCCCTCCCCCAGGGTCATATACTCGACAAT
TTCGATTTGTCTCACTCGGACCAGATTCTTGGCACTTcaacaaattttcc
aaatcctcAAGATGTATTAAGATAAAGAATATCTATTATATCTATGCAGG
GCTCTTAGATACAGGGGACTGGAGACAATTGACATTGGATCAACGTggtc
aacaaaacaaaaagaattgcCAACTTGTACCAAAGACGTGTGAGATCATC
AGTCAATTCAAGCAAGCTACTGGAAACATAAGAGGACAGGTTGGTTAACA
TCTAACTCTAACATCTACGCCGTCTACCGCCCCATCCCCCCGCCCCCGGC
TCGAAGACTGAGTGTGCGGACCCTGGGGGCCAACTACTAGTGGCATTGCA
GTTGCCCAGGTTTcggaaaattatcaaatttcgAATTGTTTCAGGAATCT
TTACGAGTTAATTGAAACGAAATTCTAAAGATATAACTTTAagataaagt
tttcaaaatcaacttttctttgCAAAATGTTGATTTGTCTACTTCCATGG
TTTAGCTTCTTGGGGTAGAGGCCCGAGAtctggtttttattttatacatA
AATGGCGAAATTAATTGCAACCGTTTTCTTAGGCATCAAATTTTGTTTGG
TTTAATTGATCTTAATGCAACCTGTTAGAAGAACCNATTTAGAAAATTAT
AACCACTCACAAATGCTGAAAGTAAGAAAATTTAGACATTTAGAAAACTA
AAAACACCCAAAGGTTTAAAAATCTCTTCATAAGAGAAACGTGGAAGAGA
AATTAAAGGATAAAGAAACCTTTAAACAaccatattgggggggggtaCAC
TTGGGAAAAAAAGGGGtacggggatgtgccgctggtcagggtaccttttt
cacctccgcatagggtcgcaaaaacaccaaaatagaaaagtcGGTCCCTC
GTagataaccttttttttgagattttgggaaaaaagtagaacattttgag
aaaatttgcgagatttagtcccattcagggtcacttttttcgcaaatttg
agtcCCACGTAGGCCCCATTTTTCTGACCACAGGTGAAACACCCCCTCCC
CCAGGGTCATATACTCGACAATTTCGATTTGTCTCACTCGGACCAGATTC
TTGGCACTTcaacaaattttccaaatcctcAAGATGTATTAAGATAAAGA
ATATCTATTATATCTTTGCAGGGCTCTTAGATACAGGGGACTGGAGACAA
TTGACATTGGATCAACGTggtcaacaaaacaaaaagaattgcCAACTTGT
ACCAAAGACGTGTGAGATCATCAGTCAATTCAAGCAAGCTACTGGAAACA
TAAGAGGACAGGTTGGTTAACATCTAACTCTAACATCTACGCCGTCTACC
GCCCCATCCCCCCGCCCCCGGCTCGAAGACTGAGTGTGCGGACCCTGGGG
GCCAACTACTAGTGGCATTGCAGTTGCCCAGGTTTcggaaaattatcaaa
tttcgAATTGTTTCAGGAATCTTTACGAGTTAATTGAAACGAAATTCTAA
AGATATAACTTTAagataaagttttcaaaatcaacttttctttgCAAAAT
GTTGATTTGTCTACTTCCATGGTTTAGCTTCTTGGGGTAGAGGCCCGAGA
tctggtttttattttatacatAAATGGCGAAATTAATTGCAACCGTTTTC
TTAGGCATCAAATTTTGTTTGGTTTAATTGATCTTAATGTAACCTGTTAG
AAGAACTCACAATGTCCAAAGCTCTGTCTGGTATAGACTTTTTGCTAACG
TCATCAATTTAATTTTgggttttttaattattcaacatgacatcctgaTT
TACAAAAGGTCATTTTGTATAAaactgattttatttttttattttttcaa
acaaaatttagatTAAATTTTCGATCATGACACCTGGCACACACGTATGG
CCGCATACTGGACCAACCAATTGTCGTTTGAGAGCACACTTGGGTTTAAG
CATACCGAAAGGCGTTGAAATCCGGGTTGGCAGTGAAACTAGGtatgcat
ttttgaagactatAAGTGTAAGAGAAAAATGCCATAAATGTATAGGAGTA
AACCCTTATAGTAGGACCCGCGAATAAGGCCTAGAAAACATGTCATGGCC
AAAAGAATGACATCACAGGCAAAACTCCTAAATCTgaaatgagtaaaaaa
ttgacgatttttaTAAGTAGAATCTAAAGAAAATgtcttgagcaaatttc
ttggtcttttcaaattttcgcaTTTAagtcgaggggtaaatcacttgaaa
aaaggtgtacgatactttttgactttttgaattttcatttgactttttga
cttttttttaacttttatttgactttttgacttttttcaaacttccattt
tgactttttcccgacaaaaacgcccaccgccttcgGGCGCCTAAAATTTC
CCGcccaaatctgtccaaaaacgccaaccgcccataaattttgctccacc
tatccgcccattcaagaaacttttttgactttttttttgactttttgtag
aggtgtacgataatttttcgagtgatttacccctcgattTAAGTTGCATA
AATAATCCCAAAACTCAATATTAAGTCCTTGTTTCCTTGACAATAACGTG
AATTTAGGGTAAAAATTTAAGCACTAGGTCTAAAGAAAGACAGTGCCAAA
TGCCATCCATATTAGACGAGTCTATACTGATCTAGACTGTAAGGCAAATG
AAAAACAGCTGTTGGATACAGAGGCGTATTTAGGGTAGGTCAAGTAGGTC
AAGTGACATAGTtccgagaaattgaaaaatatgaaaaattgttATACAGG
CTTTCTTATTCCTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNTTTTCAATTATGAATtatcaattatccccaagttaggctcactcc
ttttacaaaagtgccattttatgcttgagacgtatgtactaaatgttaaa
tctagtataaattaggatcctaacctaagaatatgctgtaagaatatttt
aggatgattttcccaaaaaagttaagaatatctatgttgaaatggattta
caccattcttataaaaaaagcgtgtattatacCAGGATCATCATTGCCTA
AATTTACgcgacccagctggcacacaacgttgtttcaacgtttatctaac
gttcacaacgcccatataacgttagatgaacgttgaaataacgttgtgtg
ccagctggggaagaaaaaaagttttaactctGTAAACTATAAACGAGACT
GCTGAATAACAAAGAATCTTCTTACTTTTCATTCTAGGAGTTGGGAAAAT
GGCAAAGTATTGATTTTTGATGATTCCTTTGATCATGAAGTTTGGCATCG
TGGAACAGAATCAAGATTGATTTTGATAATCGATTTTTGGCATCCTGATT
TACCGTTATGGGAAAGACAAAGTTTAGCTCCTATTTAGATTTTCTTCTAA
AGAactagattttatttttgaattctaatttttaactcaaatttccATTG
AGTTGTGAGGTTTCCTTAGTATTCAAATCAAGGACAAAACTATGTACACT
AAGGACAACCAGGGTGTACTTGATAATCCCTAAATTTTTAAGAGTAATTA
GGTATAAACTATGGATAATCTGGAGCAGCC

Coding sequence (CDS) from alignment at sc0001501:4..12183+

>TCONS_00036704 ID=TCONS_00036704|Name=TCONS_00036704|organism=Clytia hemisphaerica|type=CDS|length=3654bp|location=Sequence derived from alignment at sc0001501:4..12183+ (Clytia hemisphaerica)
ATGTCGGCAGCTCAACGATCTACAGAAAATGCAGAATCTAAACTTCGAGC
ACAACCTTGGTGGACCGTTGAACAATCTGGTTACGAAAAAGAGATTAGGA
AGTTGGAATATTACTGGAAAACGATGCGTGatgaagcaaataaaattttg
aaacaaaacaaagacCGTTTCCCACTGGAAGACGAAGGGCTCTTAGATAC
AGGGGACTGGAGACAATTGACATTGGATCAACGTggtcaacaaaacaaaa
agaattgcCAACTTGTACCAAAGACGTGTGAGATCATCAGTCAATTCAAG
CAAGCTACTGGAAACATAAGAGGACAGatTAAATTTTCGATCATGACACC
TGGCACACACGTATGGCCGCATACTGGACCAACCAATTGTCGTTTGAGAG
CACACTTGGGTTTAAGCATACCGAAAGGCGTTGAAATCCGGGTTGGCAGT
GAAACTAGGAGTTGGGAAAATGGCAAAGTATTGATTTTTGATGATTCCTT
TGATCATGAAGTTTGGCATCGTGGAACAGAATCAAGATTGATTTTGATAA
TCGATTTTTGGCATCCTGATTTACCGTTATGGGAAAGACAAAGTTTAGCT
CCTATTTAGATGTCGGCAGCTCAACGATCTACAGAAAATGCAGAATCTAA
ACTTCGAGCACAACCTTGGTGGACCGTTGAACAATCTGGTTACGAAAAAG
AGATTAGGAAGTTGGAATATTACTGGAAAACGATGCGTGatgaagcaaat
aaaattttgaaacaaaacaaagacCGTTTCCCACTGGAAGACGAAGGGCT
CTTAGATACAGGGGACTGGAGACAATTGACATTGGATCAACGTggtcaac
aaaacaaaaagaattgcCAACTTGTACCAAAGACGTGTGAGATCATCAGT
CAATTCAAGCAAGCTACTGGAAACATAAGAGGACAGatTAAATTTTCGAT
CATGACACCTGGCACACACGTATGGCCGCATACTGGACCAACCAATTGTC
GTTTGAGAGCACACTTGGGTTTAAGCATACCGAAAGGCGTTGAAATCCGG
GTTGGCAGTGAAACTAGGAGTTGGGAAAATGGCAAAGTATTGATTTTTGA
TGATTCCTTTGATCATGAAGTTTGGCATCGTGGAACAGAATCAAGATTGA
TTTTGATAATCGATTTTTGGCATCCTGATTTACCGTTATGGGAAAGACAA
AGTTTAGCTCCTATTTAGATGTCGGCAGCTCAACGATCTACAGAAAATGC
AGAATCTAAACTTCGAGCACAACCTTGGTGGACCGTTGAACAATCTGGTT
ACGAAAAAGAGATTAGGAAGTTGGAATATTACTGGAAAACGATGCGTGat
gaagcaaataaaattttgaaacaaaacaaagacCGTTTCCCACTGGAAGA
CGAAGGGCTCTTAGATACAGGGGACTGGAGACAATTGACATTGGATCAAC
GTggtcaacaaaacaaaaagaattgcCAACTTGTACCAAAGACGTGTGAG
ATCATCAGTCAATTCAAGCAAGCTACTGGAAACATAAGAGGACAGatTAA
ATTTTCGATCATGACACCTGGCACACACGTATGGCCGCATACTGGACCAA
CCAATTGTCGTTTGAGAGCACACTTGGGTTTAAGCATACCGAAAGGCGTT
GAAATCCGGGTTGGCAGTGAAACTAGGAGTTGGGAAAATGGCAAAGTATT
GATTTTTGATGATTCCTTTGATCATGAAGTTTGGCATCGTGGAACAGAAT
CAAGATTGATTTTGATAATCGATTTTTGGCATCCTGATTTACCGTTATGG
GAAAGACAAAGTTTAGCTCCTATTTAGATGTCGGCAGCTCAACGATCTAC
AGAAAATGCAGAATCTAAACTTCGAGCACAACCTTGGTGGACCGTTGAAC
AATCTGGTTACGAAAAAGAGATTAGGAAGTTGGAATATTACTGGAAAACG
ATGCGTGatgaagcaaataaaattttgaaacaaaacaaagacCGTTTCCC
ACTGGAAGACGAAGGGCTCTTAGATACAGGGGACTGGAGACAATTGACAT
TGGATCAACGTggtcaacaaaacaaaaagaattgcCAACTTGTACCAAAG
ACGTGTGAGATCATCAGTCAATTCAAGCAAGCTACTGGAAACATAAGAGG
ACAGatTAAATTTTCGATCATGACACCTGGCACACACGTATGGCCGCATA
CTGGACCAACCAATTGTCGTTTGAGAGCACACTTGGGTTTAAGCATACCG
AAAGGCGTTGAAATCCGGGTTGGCAGTGAAACTAGGAGTTGGGAAAATGG
CAAAGTATTGATTTTTGATGATTCCTTTGATCATGAAGTTTGGCATCGTG
GAACAGAATCAAGATTGATTTTGATAATCGATTTTTGGCATCCTGATTTA
CCGTTATGGGAAAGACAAAGTTTAGCTCCTATTTAGATGTCGGCAGCTCA
ACGATCTACAGAAAATGCAGAATCTAAACTTCGAGCACAACCTTGGTGGA
CCGTTGAACAATCTGGTTACGAAAAAGAGATTAGGAAGTTGGAATATTAC
TGGAAAACGATGCGTGatgaagcaaataaaattttgaaacaaaacaaaga
cCGTTTCCCACTGGAAGACGAAGGGCTCTTAGATACAGGGGACTGGAGAC
AATTGACATTGGATCAACGTggtcaacaaaacaaaaagaattgcCAACTT
GTACCAAAGACGTGTGAGATCATCAGTCAATTCAAGCAAGCTACTGGAAA
CATAAGAGGACAGatTAAATTTTCGATCATGACACCTGGCACACACGTAT
GGCCGCATACTGGACCAACCAATTGTCGTTTGAGAGCACACTTGGGTTTA
AGCATACCGAAAGGCGTTGAAATCCGGGTTGGCAGTGAAACTAGGAGTTG
GGAAAATGGCAAAGTATTGATTTTTGATGATTCCTTTGATCATGAAGTTT
GGCATCGTGGAACAGAATCAAGATTGATTTTGATAATCGATTTTTGGCAT
CCTGATTTACCGTTATGGGAAAGACAAAGTTTAGCTCCTATTTAGATGTC
GGCAGCTCAACGATCTACAGAAAATGCAGAATCTAAACTTCGAGCACAAC
CTTGGTGGACCGTTGAACAATCTGGTTACGAAAAAGAGATTAGGAAGTTG
GAATATTACTGGAAAACGATGCGTGatgaagcaaataaaattttgaaaca
aaacaaagacCGTTTCCCACTGGAAGACGAAGGGCTCTTAGATACAGGGG
ACTGGAGACAATTGACATTGGATCAACGTggtcaacaaaacaaaaagaat
tgcCAACTTGTACCAAAGACGTGTGAGATCATCAGTCAATTCAAGCAAGC
TACTGGAAACATAAGAGGACAGatTAAATTTTCGATCATGACACCTGGCA
CACACGTATGGCCGCATACTGGACCAACCAATTGTCGTTTGAGAGCACAC
TTGGGTTTAAGCATACCGAAAGGCGTTGAAATCCGGGTTGGCAGTGAAAC
TAGGAGTTGGGAAAATGGCAAAGTATTGATTTTTGATGATTCCTTTGATC
ATGAAGTTTGGCATCGTGGAACAGAATCAAGATTGATTTTGATAATCGAT
TTTTGGCATCCTGATTTACCGTTATGGGAAAGACAAAGTTTAGCTCCTAT
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021676XLOC_021676Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036704-proteinTCONS_00036704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036704-exon-sc0001501-1491911889:4..167TCONS_00036704-exon-sc0001501-1491911889:4..167Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:4..167TCONS_00036704-exon-sc0001501-1510915933:4..167Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:4..167TCONS_00036704-exon-sc0001501-1575043694:4..167Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1491911889:3501..3685TCONS_00036704-exon-sc0001501-1491911889:3501..3685Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:3501..3685TCONS_00036704-exon-sc0001501-1510915933:3501..3685Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:3501..3685TCONS_00036704-exon-sc0001501-1575043694:3501..3685Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1491911889:5161..5300TCONS_00036704-exon-sc0001501-1491911889:5161..5300Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:5161..5300TCONS_00036704-exon-sc0001501-1510915933:5161..5300Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:5161..5300TCONS_00036704-exon-sc0001501-1575043694:5161..5300Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1491911889:5558..5646TCONS_00036704-exon-sc0001501-1491911889:5558..5646Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:5558..5646TCONS_00036704-exon-sc0001501-1510915933:5558..5646Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:5558..5646TCONS_00036704-exon-sc0001501-1575043694:5558..5646Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1491911889:6203..6236TCONS_00036704-exon-sc0001501-1491911889:6203..6236Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:6203..6236TCONS_00036704-exon-sc0001501-1510915933:6203..6236Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:6203..6236TCONS_00036704-exon-sc0001501-1575043694:6203..6236Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1491911889:7309..7414TCONS_00036704-exon-sc0001501-1491911889:7309..7414Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:7309..7414TCONS_00036704-exon-sc0001501-1510915933:7309..7414Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:7309..7414TCONS_00036704-exon-sc0001501-1575043694:7309..7414Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1491911889:7965..8095TCONS_00036704-exon-sc0001501-1491911889:7965..8095Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:7965..8095TCONS_00036704-exon-sc0001501-1510915933:7965..8095Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:7965..8095TCONS_00036704-exon-sc0001501-1575043694:7965..8095Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1491911889:11841..12183TCONS_00036704-exon-sc0001501-1491911889:11841..12183Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1510915933:11841..12183TCONS_00036704-exon-sc0001501-1510915933:11841..12183Clytia hemisphaericaexon
TCONS_00036704-exon-sc0001501-1575043694:11841..12183TCONS_00036704-exon-sc0001501-1575043694:11841..12183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001501supercontigsc0001501:4..12183 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0348021	0	0	0	4.43113	3.84652	5.36469	7.96203	2.09947	1.68249	2.15701	1.69253	2.41313	0.94917	0.886353	3.46402	10.3739	3.48909	3.75383	3.46662	4.83539	5.72356	3.41908	4.73771	2.11442	3.24003	3.16639e-08	1.49715	11.5831	6.53867
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007803Asp/Arg/Pro-Hydrxlase
IPR027443IPNS-like
Vocabulary: Biological Process
TermDefinition
GO:0018193peptidyl-amino acid modification
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018193 peptidyl-amino acid modification
Blast
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BLAST of TCONS_00036704 vs. Swiss-Prot (Human)
Match: ASPH (Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapiens GN=ASPH PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 8.009e-84
Identity = 120/227 (52.86%), Postives = 158/227 (69.60%), Query Frame = 2 
Query:  311 LGEAYTKSGRTDDAWKLYHQGAERGFFMSAAQRSTENAESKLRAQPWWTVEQSGYEKEIRKLEYYWKTMRDEANKILKQNKDRFPLEDEGLLDTGDWRQLTLDQRGQQNKKNCQLVPKTCEIISQFKQATGNIRGQIKFSIMTPGTHVWPHTGPTNCRLRAHLGLSIPK-GVEIRVGSETRSWENGKVLIFDDSFDHEVWHRGTESRLILIIDFWHPDLPLWERQSL 988
            LG+A  + G  + A+K Y  G +RG F S  QRS  N  + L+AQPWWT +++GY + ++ LE  WK +RDE   ++ + K  F  EDE L + GDW Q TL Q+G++N+  C+  PKTC ++ +F + TG  RGQIK+SIM PGTHVWPHTGPTNCRLR HLGL IPK G +IR  +ET++WE GKVLIFDDSF+HEVW   +  RLI I+D WHP+L   +R+SL
Sbjct:  531 LGDAMQRVGNKE-AYKWYELGHKRGHFASVWQRSLYNV-NGLKAQPWWTPKETGYTELVKSLERNWKLIRDEGLAVMDKAKGLFLPEDENLREKGDWSQFTLWQQGRRNENACKGAPKTCTLLEKFPETTGCRRGQIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSL 755

HSP 2 Score: 85.8853 bits (211), Expect = 8.009e-84
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 3 
Query:    3 QSERLIFFGKGRDSVNVLAKLAEHLPKDVDVMNKLATSYLIMGSNRKAFDIHKKVISVDPGNGIANANIGYILKALQKYQEAIPYLEAGIESEDPETNQAKF 308
            +S+R  F G  R S+  L +L +  P D  + N L   YL++G N  A  ++++V+SV P +G A  + G+ILKA  K  E+IPYL+ GIES DP T+  +F
Sbjct:  426 RSDRQQFLGHMRGSLLTLQRLVQLFPNDTSLKNDLGVGYLLIGDNDNAKKVYEEVLSVTPNDGFAKVHYGFILKAQNKIAESIPYLKEGIESGDPGTDDGRF 527
The following BLAST results are available for this feature:
BLAST of TCONS_00036704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASPH8.009e-8452.86Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapi... [more]
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