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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036680 ID=TCONS_00036680|Name=TCONS_00036680|organism=Clytia hemisphaerica|type=transcript|length=275bp
tctatctaaactttcaccttataaatttcttaaaaaacatcaaatcatAT
ATTGCATTTTGGAAGAAACCCGCACTTAAAGTTTATGCTGTAGCGAAAGA
TTGGTTGGAATTTGTTGCAGCAGGAAGCAGTCGAGAAGCATCAAAAATGA
GTGATTCCACATCAAATAGAGATTACAATGAAATCAGCAGAAAGCTTGAA
ATCATCGAAAACAAAGTGGACGAGTCGATCAAATTTCGCAGATTAGTAGA
AGCATTGTATGAAGCTTTATCGTGC Run BLAST on NCBI transcript from alignment at sc0001496:9644..13629- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036680 ID=TCONS_00036680|Name=TCONS_00036680|organism=Clytia hemisphaerica|type=transcript|length=3986bp|location=Sequence derived from alignment at sc0001496:9644..13629- (Clytia hemisphaerica)
TCTATCTAAACTTTCACCTTATAAATTTCTTAAAAAACATCAAATCATGT
AAGTTTGTTTGTTTGTTGTTTTTTTGGCCTGAGGATTGTATCCTTATATT
TACCCCTTTTATATATTAAAGTCCATGTATGTATACAAATCATTGACAGT
TTAAATACTTGCAATCTCAAATTTGTGACTTTCCTGTTTGATAAAAAAAT
TTACAGTAGTGGATGAAAAATCTTATGATAACTTTTGCAGGGAAAAAGTA
AAAAAGTTCCAGCTTGTAAGCTTTGCAGTATGTTTATCTTGCTTTGATTT
GAGCTTGAATTTCTTTCTACCCAAAAAGAGACATTAAAAATGGGGATGAA
ATAGGAGCAAAGTTAAGAAATCCCCAGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCAAGTC
ATAATCTCAAATTATATCAGGACGTCAAGTGAAAAATTGCATATCATGAT
AACATATTTCAGTAACAGTCTCAATTTATACCAGGGCGTTGGCGAAATAT
TCCAAGTCATAATCTCAAATTGTACGCAGGACGTCAAGTGAAATAAGTTA
TAATTTCAAATTAAACCAGGACGTCAAGTGAAATATTGCAAGTTATAATC
TCGAATTGTACTAGGACGTCAAGTGAAATATTCCAAGTTATAATCTCAAA
TTATATCAGGACGTTAAGTTAAATATTGCAAGTTATATATAATCTCAAAT
AATACCATAGGACGTCGTGATTGCAAGTCTTAATCTCGATAATAATCCAG
GATGCTGTGCCAAATATTTCATTTCGGTATTGTGCTCTCTGCAAATTACT
GTCACACATATTCTCATTATTTTCCCATGCATCCAACTTCTGAATTTCTG
ATTCTTACCTAGAAAATTTAGAATAATAATCTGATAATTTTTAAAGGTAC
GGCTAGGTAACTGAACTTCTCGACAATTCAAATCAAAATGAGAAAATGTG
AAAGTTTTCGAACAAGAAGTATATTAAAAGAAGTATATTAAAAGCAGTCT
TTTAAAGTCCACAATTGACAATAAGTAGTTTGTTTGACATTTTTCAAAGT
TGTCAAAGAACTGCTAACACCAGATGAAAATAACTTTTTACGAGTGGAGA
TATGAGTTTATTCACATATCTAATGAAACACTACCTGTGATTCATAGGAT
TCATAAGAAATATACAAACTGACTTACCTACTTAGTTTATCTGTGTCTTT
TTGCTGTGTGTCAGTATGTAGACTTCAGTTGAAAAATCATTTTAAAACAG
CTTCTACAGAAGCATACTTGAGGAATAAGTACTCCCTTAAACTAAGTTAT
CTTGTAGTCTCAATAAAACAAATGAACCAAGAAGANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAAACCACAGATCCATCTTGCATCTTGTCCTTGTGT
CTTCTTCCCAGAGACCAGCGTGTTTTTGATCGTTTGAACCAAGCTCGGCC
TTTAAACTTAGGCGCTTTTCACCACGGAGCGACTAACCAGTCTCACTGGT
TAGTCCAAGCAAAACCGCAAAGTTTTTTTTATGTCAAATAGTTATCGTCC
GTTTCTTCGAAACTCTCACGCCGATTTTTTTCCGTATACCGCCATAACAC
CATACCGCCATTTTCCCGCCTTTACTATCACTGTAATGGACGATAACATC
GTCTATGGTAAATGCCGCTGTAAATCAGGGGGTTCAGATCATTGTTGTAA
TTTGATCATTTGCCGGTTATTCTATTCCCAGACAGGAAAATAATTTACCG
CAAGCAGAATATTTTTGTACCTTGTACCTTTTGTACCTGGTGATTTTTCA
GCTTGAGATTATGTCTAATGTTATGGTTTTTTGGAGTGCTTGTTCTAAGA
GATGAGCGAATATAATTATTTTTAGTTTTCAAGAGAAGCAAATTTAATCT
TTCTTCTACAAGATTAAACTTTAATATAATGCCAATATTATGCGGGTATT
ATGCATGTAAGTTTTATATTGATACTTACTTTTTGCATAGGTTTTGCATA
CTTTTCAATTTTCAATGAAATCTCACCACAGCAATTAGGCCACCATAATG
TAGAGAGCCGCGTGGTCTTTCGAAAAACCAGAGGCTTTGATGAGTTGGTT
CAACAATTAGAACAAATAAACACAGAAACAGCCAACGATTACAAAGACGC
GTTTGCTGACACCCTGTCAATTGTCACACCCATTGTTGATGAAGTGTAGG
ACATGCTTTATGAATATTTATTTGTACAAGTGGTCAAATTTCTTTTGATC
GCAAAGAAAAAGCAAAGATTGACATACATTTCCTCGTTGTTCCTTTTTTT
TAATTTACACTGGAATATGAAGGGATTTCATATAGTTTTGAGATTGCTTT
TGAACGATATAAAGTCCAAGGTTCCACTATTGTAGTTTTCTTATTATACC
ATTCTGTACCATTAGTTGTCTGAAACACTCTTTTCTATTAGAACAAAGGT
CAAAGAAACCCGCAGAAAATAAAAGTAATACAAAAAAGTCCTAATCTTCA
AAAGTGCTAATTTGATATCATTATTTATCGTTTTTTGAAAAATCAGGGTC
GGTTGCCCCTGTATGTATGTCTTTGAAGAGTGTCGTAAATTTTGCTGTGT
CCAAAATAAGATTTAGTTATCGATCACATTCCAAACCTTATAATTTAGCT
CTTTAGAAACAGTGATCTCTAAAGGCTGTTTCGAAGGTCATGTAAATTTT
GAAATCTAAAGCTTTAAGAAAAATAACACAGTCAGACTAGATGGGGAAAT
CATGTTAAAAATCTGCTAAACGGACCTCTCTATTTTTCAGATATTGCATT
TTGGAAGAAACCCGCACTTAAAGTTTATGCTGTAGCGAAAGATTGGTTGG
AATTTGTTGCAGCAGGAAGCAGTCGAGAAGCATCAAAAATGAGTGATTCC
ACATCAAATAGAGATTACAGTAAGCCTAGTGTTACTTTTATTACTTTTAT
CATTCATGGCATATTGGTAAAAGTGAATTTCAGTATTATAAATTTGAACC
GACCAAGTTTTGGGAAGAAGATATTGACTATAATTCTAACATCTAATGGT
TTTCTTTGAACAATAATTTTAAATATGTACACATGGAGGTATTATTCGTT
TTTAAAAATAAATTTATGAATTTACAGAATCACAGCTACGGTTTAATACG
AAAACTGTCAAACTCTCACTTTCCTACATCATCCACGCTAAAATACACTT
TATAAGAATGTCCATGATGAAAATGCCCAAAAAATTAAGAATAATGCTAA
GAATATCACCATCATGGAATTTTGCTACTCGAGCTAAGAATGCTTGAGTC
GTATGTACTAAATGTTAAATCTACTCTGAATTAGGATACTAACCTAAGAA
TGCTGTAAGAATATTTTATGATGATTTTCCCAAAAAAGTTAAGAATATCC
ATGGTGAAAAGGATTTACACCATTCTTATAAAAATAAGCATGTAGTAGAG
TACTACTTCCGTAAATGAAATTAAAATTTTCTTTACAGATGAAATCAGCA
GAAAGCTTGAAATCATCGAAAACAAAGTGGACGAGTCGATCAAATTTCGC
AGATTAGTAGAAGCATTGTATGAAGCTTTATCGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036680-exon-sc0001496-1575043694:13582..13629 | TCONS_00036680-exon-sc0001496-1575043694:13582..13629 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1575043694:10311..10439 | TCONS_00036680-exon-sc0001496-1575043694:10311..10439 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1575043694:9644..9741 | TCONS_00036680-exon-sc0001496-1575043694:9644..9741 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1510915933:13582..13629 | TCONS_00036680-exon-sc0001496-1510915933:13582..13629 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1510915933:10311..10439 | TCONS_00036680-exon-sc0001496-1510915933:10311..10439 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1510915933:9644..9741 | TCONS_00036680-exon-sc0001496-1510915933:9644..9741 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1491911889:13582..13629 | TCONS_00036680-exon-sc0001496-1491911889:13582..13629 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1491911889:10311..10439 | TCONS_00036680-exon-sc0001496-1491911889:10311..10439 | Clytia hemisphaerica | exon |
| TCONS_00036680-exon-sc0001496-1491911889:9644..9741 | TCONS_00036680-exon-sc0001496-1491911889:9644..9741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001496 | supercontig | sc0001496:9644..13629 - |
Blast
The following BLAST results are available for this feature:
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