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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036661 ID=TCONS_00036661|Name=TCONS_00036661|organism=Clytia hemisphaerica|type=transcript|length=1791bp
AGAATTCTGTCTCTATACTGGAGCAGATACATCCAAACCAGATAATGCAC
TTCTTCGCTCAGAAGCTGCATTTTGTGCCGTGCTTGACTGTGCTTGTTCG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTATACTGGAGCAGATA
CATCCAAACCAGATAATGCACTTCTTCGCTCAGAAGCTGCATTTTGTGCC
GTGCTTGACTGTGCTTGTTCGAGCACAGTTTGTGGAACATCCTGGTTTCA
GAACTATACTCAAATGCTCAATGAAgaggagaagaagaaaatcaagcaGT
TCACTGGAGGCAGACTGTTCAAGTTTGGCGGTGGTGAAGTTCTTTCCTCA
ATTGCCTGTTATGAAATCCCTGCGTATCTTGCGTATCTTGCGTATCTGAG
CAGATCTTCAACAATGGCGATCGAGTGTTCTACATGCGTGAAGGTTCAAA
GAAATGGCTTGGCCCAGCCAaagtggtgtttcaagatggcaaAGTGATAT
TTATTCGTCACGGAGGAATAATGGTTCGTGTTTCTCCAAATCGTCTCATA
AAAGCACCAGAGGATCCAACACTCACACCAATGGAAAACAATGCCAAATC
GCGTGGAGAAGAATTTGAGCTGCCAATACAGACACCAATATCAATCATAA
ACCCTTGGTTGAAGTTTTGTCAAAACATGATGGATCCAGATCAAAAACAT
TCACTGAGGGAGATGTTAGTATCAATAAAAGAACCGCCAGAGGTGATAAC
GATCCACCAAATCCAGACGAATCAATAAGACCAGCAACACCAACAACAAG
ACAAGGACCGTTATTATCTGCGTCTCCAACAGTTAATGATGCAATCTCAG
TTCAATCAGCATTCCAGAAAAAAGCCACATCATCTCAACAATCGCCTATC
ATCTCTTCCAAAGCTTCACCTAAAGATTCTACATCCAAACGTTCATCGAG
AAATTCATCAATAACAGCTCCATCACCAAAAGATTCAACACGTCAAACTG
TGAAATTTCAAGACTCATCCTTAGAAACATCCACATCAAGAACAAAACAG
ACAGCAAAGAACCAGACGTTTCCAAAGAAGGGTGAACCATCTCAATCAAG
CAATCATCAGAGTGGCAGTCTGCAAAGGTAATAAGTCGTGCTGGTAAAGC
CAATGGGAAGTTCAAAAGCTGGTTCAACCTGGAAAGCTCAGAAGACCAAT
CTCCGATGGCTATTGATTTAGAAAAATGTGAGTGGAAGCAAATTCATGAT
GCTCCTGAAGAAGTCAATATTGTTATCATACCAAAGAATCAACAACAAAC
ACCTGACTGTGAACGAGCAAAGCTGGAGGAGATTGAGAAGCTCAAACAAT
TCAATACCTTTTcagtagttaAAGACGAAGGTCAATTTCGTATATCAACA
ACATGGGTGTTATGGGAGAAGAATGGTGGTGTCTGAGCACGTCTTGTTGC
AAGAGGCTGTGAGGAATCATTCAAAGAAAGGACAGACTCACCCACAGTTT
CAAAGAATGTCCTGCGAACATTTCTGGCAATTGTGCCAAACACGAATTGG
GATGTCAAGACAACTGATATCAAATCTGCATTTTTGCAAGGAAAAACAAT
CTCAAGGGAAATACATGTGTCTTCTCCAAAAGAAACTAAGTTGAAAGGAA
AACTTTGGAAACTACAGAAGTGTCTCTATGGGTTAAACGACGCAGCCCGA
CAATTCTACGCAAGTGTTGCAGATGAGTTAACAAAGCAAGGATGTATACA
ATCAATTTTGGATCCAGCAGTCTTCTACTACAAGTTAAANN Run BLAST on NCBI protein sequence of TCONS_00036661-protein >TCONS_00036661-protein ID=TCONS_00036661-protein|Name=TCONS_00036661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
NSVSILEQIHPNQIMHFFAQKLHFVPCLTVLVRXXXXXXXXXXLYTGADT
SKPDNALLRSEAAFCAVLDCACSSTVCGTSWFQNYTQMLNEEEKKKIKQF
TGGRLFKFGGGEVLSSIACYEIPAYLAYLAYLSRSSTMAIECSTCVKVQR
NGLAQPKWCFKMAK Run BLAST on NCBI transcript from alignment at sc0001492:129..2219+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036661 ID=TCONS_00036661|Name=TCONS_00036661|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at sc0001492:129..2219+ (Clytia hemisphaerica)
AGAATTCTGTCTCTATACTGGAGCAGATACATCCAAACCAGATAATGCAC
TTCTTCGCTCAGAAGCTGCATTTTGTGCCGTGCTTGACTGTGCTTGTTCG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTATACTGGAGCAGATA
CATCCAAACCAGATAATGCACTTCTTCGCTCAGAAGCTGCATTTTGTGCC
GTGCTTGACTGTGCTTGTTCGAGCACAGTTTGTGGAACATCCTGGTTTCA
GAACTATACTCAAATGCTCAATGAAgaggagaagaagaaaatcaagcaGT
TCACTGGAGGCAGACTGTTCAAGTTTGGCGGTGGTGAAGTTCTTTCCTCA
ATTGCCTGTTATGAAATCCCTGCGTATCTTGCGTATCTTGCGTATCTGAG
CAGATCTTCAACAATGGCGATCGAGTGTTCTACATGCGTGAAGGTTCAAA
GAAATGGCTTGGCCCAGCCAaagtggtgtttcaagatggcaaAGTGATAT
TTATTCGTCACGGAGGAATAATGGTTCGTGTTTCTCCAAATCGTCTCATA
AAAGCACCAGAGGATCCAACACTCACACCAATGGAAAACAATGCCAAATC
GCGTGGAGAAGAATTTGAGCTGCCAATACAGACACCAATATCAATCATAA
ACCCTTGGTTGAAGTTTTGTCAAAACATGATGGATCCAGATCAAAAACAT
TCACTGAGGGAGATGTTAGTATCAATAAAAGAACCGCCAGAGGTGATAAC
GATCCACCAAATCCAGACGAATCAATAAGACCAGCAACACCAACAACAAG
ACAAGGACCGTTATTATCTGCGTCTCCAACAGTTAATGATGCAATCTCAG
TTCAATCAGCATTCCAGAAAAAAGCCACATCATCTCAACAATCGCCTATC
ATCTCTTCCAAAGCTTCACCTAAAGATTCTACATCCAAACGTTCATCGAG
AAATTCATCAATAACAGCTCCATCACCAAAAGATTCAACACGTCAAACTG
TGAAATTTCAAGACTCATCCTTAGAAACATCCACATCAAGAACAAAACAG
ACAGCAAAGAACCAGACGTTTCCAAAGAAGGGTGAACCATCTCAATCAAG
CAATCATCAGAGTGGCAGTCTGCAAAGGTAATAAGTCGTGCTGGTAAAGC
CAATGGGAAGTTCAAAAGCTGGTTCAACCTGGAAAGCTCAGAAGACCAAT
CTCCGATGGCTATTGATTTAGAAAAATGTGAGTGGAAGCAAATTCATGAT
GCTCCTGAAGAAGTCAATATTGTTATCATACCAAAGAATCAACAACAAAC
ACCTGACTGTGAACGAGCAAAGCTGGAGGAGATTGAGAAGCTCAAACAAT
TCAATACCTTTTcagtaccttattggaactaattttcgcgggttttaatt
ttggCGTTTTTCgtggtttttcgtcaaaatcgcgaaaatttgatcccgcg
aaaaattttgagagttgaaaaccgcgaaaattaattcccgcgaaatacaa
ttttttccaattttatcgaaaaatttgaaaaatccctaggaaaatgaagg
aaatttgtccaaaaaagggcaaaaccgcgaaaattaaaacccgcgaaatg
caatttttcggatattttttttcgaccgcgaaaattagttcccgcgaaaa
ttagttccaataaggtagttaAAGACGAAGGTCAATTTCGTATATCAACA
ACATGGGTGTTATGGGAGAAGAATGGTGGTGTCTGAGCACGTCTTGTTGC
AAGAGGCTGTGAGGAATCATTCAAAGAAAGGACAGACTCACCCACAGTTT
CAAAGAATGTCCTGCGAACATTTCTGGCAATTGTGCCAAACACGAATTGG
GATGTCAAGACAACTGATATCAAATCTGCATTTTTGCAAGGAAAAACAAT
CTCAAGGGAAATACATGTGTCTTCTCCAAAAGAAACTAAGTTGAAAGGAA
AACTTTGGAAACTACAGAAGTGTCTCTATGGGTTAAACGACGCAGCCCGA
CAATTCTACGCAAGTGTTGCAGATGAGTTAACAAAGCAAGGATGTATACA
ATCAATTTTGGATCCAGCAGTCTTCTACTACAAGTTAAANN Coding sequence (CDS) from alignment at sc0001492:129..2219+ >TCONS_00036661 ID=TCONS_00036661|Name=TCONS_00036661|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0001492:129..2219+ (Clytia hemisphaerica)
AATTCTGTCTCTATACTGGAGCAGATACATCCAAACCAGATAATGCACTT
CTTCGCTCAGAAGCTGCATTTTGTGCCGTGCTTGACTGTGCTTGTTCGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTATACTGGAGCAGATACA
TCCAAACCAGATAATGCACTTCTTCGCTCAGAAGCTGCATTTTGTGCCGT
GCTTGACTGTGCTTGTTCGAGCACAGTTTGTGGAACATCCTGGTTTCAGA
ACTATACTCAAATGCTCAATGAAgaggagaagaagaaaatcaagcaGTTC
ACTGGAGGCAGACTGTTCAAGTTTGGCGGTGGTGAAGTTCTTTCCTCAAT
TGCCTGTTATGAAATCCCTGCGTATCTTGCGTATCTTGCGTATCTGAGCA
GATCTTCAACAATGGCGATCGAGTGTTCTACATGCGTGAAGGTTCAAAGA
AATGGCTTGGCCCAGCCAaagtggtgtttcaagatggcaaAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036661-exon-sc0001492-1491911889:129..1492 | TCONS_00036661-exon-sc0001492-1491911889:129..1492 | Clytia hemisphaerica | exon |
| TCONS_00036661-exon-sc0001492-1510915933:129..1492 | TCONS_00036661-exon-sc0001492-1510915933:129..1492 | Clytia hemisphaerica | exon |
| TCONS_00036661-exon-sc0001492-1575043694:129..1492 | TCONS_00036661-exon-sc0001492-1575043694:129..1492 | Clytia hemisphaerica | exon |
| TCONS_00036661-exon-sc0001492-1491911889:1793..2219 | TCONS_00036661-exon-sc0001492-1491911889:1793..2219 | Clytia hemisphaerica | exon |
| TCONS_00036661-exon-sc0001492-1510915933:1793..2219 | TCONS_00036661-exon-sc0001492-1510915933:1793..2219 | Clytia hemisphaerica | exon |
| TCONS_00036661-exon-sc0001492-1575043694:1793..2219 | TCONS_00036661-exon-sc0001492-1575043694:1793..2219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001492 | supercontig | sc0001492:129..2219 + |
Blast
The following BLAST results are available for this feature:
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