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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036550 ID=TCONS_00036550|Name=TCONS_00036550|organism=Clytia hemisphaerica|type=transcript|length=1748bpRun BLAST on NCBI protein sequence of TCONS_00036550-protein >TCONS_00036550-protein ID=TCONS_00036550-protein|Name=TCONS_00036550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp AGGKVILEQCLNTVLVSLSLLMAGSGNITILKMARQLRKRTNDVSYGNHMRun BLAST on NCBI transcript from alignment at sc0001479:530..20241+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036550 ID=TCONS_00036550|Name=TCONS_00036550|organism=Clytia hemisphaerica|type=transcript|length=19712bp|location=Sequence derived from alignment at sc0001479:530..20241+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001479:530..20241+ >TCONS_00036550 ID=TCONS_00036550|Name=TCONS_00036550|organism=Clytia hemisphaerica|type=CDS|length=3240bp|location=Sequence derived from alignment at sc0001479:530..20241+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036550 vs. Swiss-Prot (Human)
Match: APC1 (Anaphase-promoting complex subunit 1 OS=Homo sapiens GN=ANAPC1 PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 2.207e-56 Identity = 87/166 (52.41%), Postives = 120/166 (72.29%), Query Frame = 2
Query: 8 GKVILEQCLNTVLVSLSLLMAGSGNITILKMARQLRKRTN-DVSYGNHMAIHMAIGFLFLGGGRYTLKTDDIAIASLLCAVYPKWPISSKDNRFHLQALRHLYVLACEPRLFVTRDVDNKNICYTPIEVTLKETLNYPESRVKMLSPCFIPESKYIKKITTLGPRY 502
G LE CL+ VL+SL+++MAGSGN+ +L++ R L +T +++YG H+A HMA+G LFLGGGRY+L T + +IA+LLCA+YP +P S DNR+HLQALRHLYVLA EPRL V DVD CY +EVT K T Y +++ ++++P +PE +K+I GPRY
Sbjct: 1508 GPHNLETCLSVVLLSLAMVMAGSGNLKVLQLCRFLHMKTGGEMNYGFHLAHHMALGLLFLGGGRYSLSTSNSSIAALLCALYPHFPAHSTDNRYHLQALRHLYVLAAEPRLLVPVDVDTNTPCYALLEVTYKGTQWYEQTKEELMAPTLLPELHLLKQIKVKGPRY 1673 HSP 2 Score: 77.0258 bits (188), Expect = 2.207e-56 Identity = 45/148 (30.41%), Postives = 82/148 (55.41%), Query Frame = 1
Query: 550 FEKKKAGYLSYAEDPKGFRNLLGRTFTNQSE-----KLECVKAFSSATNVVLFEEMFCH---SKDGDKKYAEFFSNILYECVRQEKLDVLNGYLAIEKIIRDIENNRLS-VYDFQQLRLLFSYYINTHHKLLKMNYVSKTPLISGLYM 966
+ K +AG LSY EDP G+++LL +T N++ K E + AF+S ++ F E FC + ++ + FS++LYECV QE ++L Y+A+++ IR + +S + Q++L+ ++ + H+ N+ + GL+M
Sbjct: 1698 YVKLRAGQLSYKEDPMGWQSLLAQTVANRNSEARAFKPETISAFTSDPALLSFAEYFCKPTVNMGQKQEILDLFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEFFSSRSHQERLQNHPKR-----GLFM 1840 The following BLAST results are available for this feature:
BLAST of TCONS_00036550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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