TCONS_00036541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036541
Unique NameTCONS_00036541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036541 ID=TCONS_00036541|Name=TCONS_00036541|organism=Clytia hemisphaerica|type=transcript|length=560bp
ATTGCATAGAGTATGTTTGATCCACGCAAGGACTCATGTTGGTTTGGCCT
AAAGAGGATCATACTGGGTCACACAGCAGGAAGTATTTACAGTGCACTTG
TATcgagaaaacttttttccagaGTTCAACACTCTCAATGTGCTGATGAA
ACAACCATCCATATATTCAGCTGAGACATACGTAATATTATaGTTCAACA
CTCTCAATGTGCTGATGAAACAACCATCCATATATTCAGCTGAGACATGC
GTAGTATTTGcagatttctttcaaacaaagATGGTACAGCCATAATAACA
CCTTCAACTATGAATGCAAAAGGGCATCAACAGAGTTATCCAACCACGTT
TTGGGACCTGCAAATCAAAAACATACAACCAAAATTATCATGGGAGATTA
TCGACCACGCCCGCTCGTATTTCAAAGGCTTGGTAAACTGCAACATCTGT
CTCACAGAAAAATTTCACTTAATTACATCAGAGCTTCATCTCGTAAACAA
AAGATCAGAACTTATTTCCACATGTCGCCATAACAACAGATTTAATCTGA
AGAACTTCAA
Run BLAST on NCBI

transcript from alignment at sc0001478:26104..28231-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036541 ID=TCONS_00036541|Name=TCONS_00036541|organism=Clytia hemisphaerica|type=transcript|length=2128bp|location=Sequence derived from alignment at sc0001478:26104..28231- (Clytia hemisphaerica)
ATTGCATAGAGTATGTTTGATCCACGCAAGGACTCATGTTGGTTTGGCCT
AAAGAGGTAAAATAAGATCTCCTTTTTATCTCATTAAGGCCAGGGCAAAC
CAGTCCAACATTTCATCCAACATGATTTTCAAATGTTGGATGAAATGTTT
GATGGAAAAACTTGCGTTGGATGAAGCAAAAATCAAGGCCGGGGCAAACC
GATCCAACATTTCATCCAACATGAGTTTCAAATGTTGGATGCAATGTTTG
ATGGAAAAACTTGCGTTGGATGAAGCAAAAATCAAGGCCGGGGCAAACCG
ATCCAACATTTCATCCGACATGACTTGGAAAAAAATGAAAATTCCAAAAA
ATGAAGAAAAAAGTACTCCCAAAAACCAATCCAACACGAAAAATTTCACA
ATTCAATGAGAGAGCCTCTTTGATCTCGCCGCAAATGTTGGATGAAATTT
TTGATGGCGATCAAACTTCATCCAACACCGTCCAGCACGATTTTTTTCTT
CTTTTTTTGAATTTTCGTTTTTTTTCCAAAAATTTTAATTGACGCAAACC
GGTCCAACATTTCATCCAACATCAGAAAAAGGCATGTTTATGTTTATGTT
TCTTTTCTTTAAAGTTGATGCAAAGTAGTACAATGTGTACTTAGCTCGAG
GCTAATCAATATCAAGCATGTTGGATGAAATATTGGATCGGTTTGCCCTG
GCCTTTAAAGTAGCATTCACACGTGGGACAAGTAAAGATTCCCTCATTTT
TGATAATATGAATCTTCTTTATATTGAAAATGCGATTATTAAATTCAAAC
CATTTATAAAAGTAATAATGCGGCTTTGTCTGACTTAGTAATTATGTTTA
ATTTGCTTAAAGCAAACTTCTATTCATTTCAGGATCATACTGGGTCACAC
AGCAGGAAGTATTTACAGTGCACTTGTATCGAGAAAACTTTTTTCCAGAG
TTCAACACTCTCAATGTGCTGATGAAACAACCATCCATATATTCAGCTGA
GACATACGTAATATTATGTAAGAGCTTGTTTATTTACGTCAACCAGGACT
TCCTATAAAATACATTTTTGTCAGTGATGAATAGGCTTAAATGTATTTCT
AAAATCATCTTAAACAAATTTGTAAAGGGTGCAGTGCCTCTTGTAAATCA
TTATCTAATGTAATTAAATGGTGCCAAACTGTAATTGATTAGTAAATCAT
ATCTTGAGCTTACTAGATTTATACTCTTTAAAAATTTATTGCAGAGGCTT
CGTCGGACTTAGTGATTTTGTAAATTTGTTTAAAGCAAATAATTATTCAT
TTTAGGATCATACTGAGTCACACAGCAGGACGTATTTACAGTGCACTTGT
ATCGAAAAAACTTTTTTCTAGAGTTCAACACTCTCAATGTGCTGATGAAA
CAACCATCCATATATTCAGCTGAGACATGCGTAGTATTTGGTATGAACTA
TTTTATTTTCGTCCACCAGGACTTCCTATAGAATACATTTTTGTCAGTGA
TGAATAGTCTTTAATGTATTTCTAAATCATCTTAAACAAATTTGCCTCTT
GCAAATCATTATCTAATGTAATAAAAGTTACCAAACTGTAGGAGATTGAT
TAATCATATTCCCAAACCTCTTCTATTTTTTGTTCAGAGCTTTGTATACG
ATGCCACAGAGGGTAGATATCAATTATTTCATGGCTTTCTTTCAAAATAA
ACTTCTGAAGGAGGTATAAATTAATATAGATATAGATCGATTTAAAGGTA
AAATTTTAATTTTCATCGTTTTTATGGCAAACTCATCTTGTTTCAAAAAT
TGCTTTGAAAAATTGACGTTTTTTTTAGCAGATTTCTTTCAAACAAAGAT
GGTACAGCCATAATAACACCTTCAACTATGAATGCAAAAGGGCATCAACA
GAGTTATCCAACCACGTTTTGGGACCTGCAAATCAAAAACATACAACCAA
AATTATCATGGGAGATTATCGACCACGCCCGCTCGTATTTCAAAGGCTTG
GTAAACTGCAACATCTGTCTCACAGAAAAATTTCACTTAATTACATCAGA
GCTTCATCTCGTAAACAAAAGATCAGAACTTATTTCCACATGTCGCCATA
ACAACAGATTTAATCTGAAGAACTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021552XLOC_021552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036541-exon-sc0001478-1575043694:28176..28231TCONS_00036541-exon-sc0001478-1575043694:28176..28231Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1575043694:27215..27349TCONS_00036541-exon-sc0001478-1575043694:27215..27349Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1575043694:26792..26860TCONS_00036541-exon-sc0001478-1575043694:26792..26860Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1575043694:26104..26403TCONS_00036541-exon-sc0001478-1575043694:26104..26403Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1510915933:28176..28231TCONS_00036541-exon-sc0001478-1510915933:28176..28231Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1510915933:27215..27349TCONS_00036541-exon-sc0001478-1510915933:27215..27349Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1510915933:26792..26860TCONS_00036541-exon-sc0001478-1510915933:26792..26860Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1510915933:26104..26403TCONS_00036541-exon-sc0001478-1510915933:26104..26403Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1491911889:28176..28231TCONS_00036541-exon-sc0001478-1491911889:28176..28231Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1491911889:27215..27349TCONS_00036541-exon-sc0001478-1491911889:27215..27349Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1491911889:26792..26860TCONS_00036541-exon-sc0001478-1491911889:26792..26860Clytia hemisphaericaexon
TCONS_00036541-exon-sc0001478-1491911889:26104..26403TCONS_00036541-exon-sc0001478-1491911889:26104..26403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001478supercontigsc0001478:26104..28231 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.627319	1.07376	0.176102	0	0.855308	0.169239	0.671187	0.432682	1.00544	1.15883	1.25495	1.03145	0.705056	0	0.395945	1.00033	0.504301	0.808623	0.839743	0.327368	0.508624	0.42614	0.969325	1.56443	0.762753	0	11.0708	5.74589	0.45241	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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