TCONS_00036488 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00036488
Unique Name	TCONS_00036488
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	892

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001472:38976..42133+
coding sequence from alignment at sc0001472:38976..42133+

transcript sequence

>TCONS_00036488 ID=TCONS_00036488|Name=TCONS_00036488|organism=Clytia hemisphaerica|type=transcript|length=892bp
CAGGTGATTTAGCGGTAGACTGCGACCCAAAGAAGTGCAGCTCAAAGACG
TGTCGATGTCCATCAAATGTACCGCCATCCAGTATCAACTCAAAAGATGT
TCCAAAATTCGTCCTCTTGACCATGGATGACGATATGTCAAACTCAAAAT
ACAACGCCATGCGAGATATCTTGGGTCAAAGAACAAATCCGAATGGATGT
CCAATCAAAGCTACCTTCTTTTTATCAACTCTTGGTGGTTTGGGTGAAAT
CAGAAAACTACAATCTTTAGGTCATGAAATTGCATGTCACACAGAATCAC
ATCGTAACAGCCAATCGTACTGGAAGCGTTCAAAGTATCAAACCTACAAA
CGGGAAATCGTGGATTATCGAGACAAACTCTCCAAAGCTGGTATAAAAGA
AGTCAGAGGTTACAGGCAGCCGTACCTTCAGACGGGCGGAGATACGACGT
ATAAAGTGCTTCACGATCACGACTTCTTGTACGATTCATCACTTCCGACG
GCGTTGAACGAAGGCTTGTGGCCGTATACGCTAGACTATAAGATTCATAA
GTGTGTCATTCCTCCGTGCCCAAAAGGGAGTTACGATGGCTTATGGCAGG
TACCCATTGAAATCTATCAAAACCAAATAACTGGCCACAAATGCTCCCTC
TTCGATGAGCCATATTGTTGGTATAATCTTTTGACGGAAGATCAAACCTA
CGATTATTTCATGGCTAATTTTGAGCGACATTTCAGTGAAGGGCGGACCT
CACCCTTCCCGATGGCGGGACATCTTTTGAATCTCCTCAACGGAGTTAAC
AAAACCAGGCGAGAAGGTATGATCCGTTTCATGGACACCCTTTTGAAAAA
AGACGATGTTTATTTCGTTACCATGACAGAACTCATTCGCTG

Run BLAST on NCBI

protein sequence of TCONS_00036488-protein

>TCONS_00036488-protein ID=TCONS_00036488-protein|Name=TCONS_00036488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
GDLAVDCDPKKCSSKTCRCPSNVPPSSINSKDVPKFVLLTMDDDMSNSKY
NAMRDILGQRTNPNGCPIKATFFLSTLGGLGEIRKLQSLGHEIACHTESH
RNSQSYWKRSKYQTYKREIVDYRDKLSKAGIKEVRGYRQPYLQTGGDTTY
KVLHDHDFLYDSSLPTALNEGLWPYTLDYKIHKCVIPPCPKGSYDGLWQV
PIEIYQNQITGHKCSLFDEPYCWYNLLTEDQTYDYFMANFERHFSEGRTS
PFPMAGHLLNLLNGVNKTRREGMIRFMDTLLKKDDVYFVTMTELIR

Run BLAST on NCBI

transcript from alignment at sc0001472:38976..42133+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00036488 ID=TCONS_00036488|Name=TCONS_00036488|organism=Clytia hemisphaerica|type=transcript|length=3158bp|location=Sequence derived from alignment at sc0001472:38976..42133+ (Clytia hemisphaerica)
CAGGTGATTTAGCGGTAGACTGCGACCCAAAGAAGTGCAGCTCAAAGACG
TGTCGATGTCCATCAAATGTACCGCCATCCAGTATCAACTCAAAAGATGT
TCCAAAATTCGTCCTCTTGACCATGGATGACGATATGTCAAACTCAAAGT
ATGTGCTTATGAAAGAgaataaacaaaatttaacgaattttgataaattg
tttgATTGTAAGCAAGTTAGGGTCTGGTTTCTTTTTCAGTGTAAAAATAA
CATTTGACTCGAAAATTGTCATCCTCATTGTGGAAATAGTTATAGCAAAT
ACTTCAATAAAGTGTCGGCTCCTAATATTGAATTCCAACTACtgcatttt
ggaaaaattatcaatctagaTTAAACAATAAGAATTCATACTTAGaataa
tccgccattttgatcggagtttttagaaaagtggtaccctaatgggcAGC
ACTACTCAATGAGGTTCAGTTTAtgattcaataaaaattttccgtcaaaa
atattttcacccACATATAGTAGTGGTACGACTAAAAACTTCTTCGTTTG
GCCGGGATCGAGAAACTGTGCCCAGTGTTTATAAAGGTTTGAGCCATTGC
CAGCTAACGTAGAATGAGCGCTATTCGAATTGTCAcgtcatttcacagtc
gaaaagAATCATGGGTGATCAGGACCACTGTACTCTGATAACGACTTTCT
TTTGGTCTAAAGTTTTGCGTTATTGGGgacgcaatcagtcctgattatcT
ATGATTCATATAGACTGTGAAATGGCTTATTTTCACGTCATTTCTGATAA
CTTTGTTTTCTAGATACAACGCCATGCGAGATATCTTGGGTCAAAGAACA
AATCCGAATGGATGTCCAATCAAAGCTACCTTCTTTTTATCAACTCTTGG
TGGTTTGGGTGAAATCAGAAAACTACAATCTTTAGGTAACTAACAGTAAA
AAAACTTCGCTTTGATATTATTCTAAATGAACATCATTCTAGGGTATTCT
TTGACCAGATGTTTCCGACTGTATGGTTCGGGGAAGATAAGAACAATTCT
TTTGAGAGAAATTATAAGTCGCCTGACAAACCAACCAGTGTAATAAAGCG
GGAAAACCAATCGAAGGTGTATAGGTGAACACAAAAGAAGGCTCTATCTA
TCTGCATATGGGATTGTATAGCATTGTTTTAACAGCACTGTTTCAAATAT
CTTCGCCCTTTACGCCCTTGACTTCTGAAAGAAACACCCATTGACTCTTT
GAGTAGAAACAAATTGTAGAAACAAGTTGAAACAACTTTTTCCATCAATA
TACAGGTCATGAAATTGCATGTCACACAGAATCACATCGTAACAGCCAAT
CGTACTGGAAGCGTTCAAAGTATCAAACCTACAAACGGGAAATCGTGGAT
TATCGAGACAAACTCTCCAAAGCTGGTATAAAAGAAGTCAGAGGTAAAAT
GATTTACAAAGAAGAAGGTTTACAAAAATCCTTTATCAAAATCATCTATA
TCGTCCATATCACAGACGTTTAATGTGTATAATAATAAATCAACCTTGCT
TGCATCGTTCGATTTCAACTCTTTACCACTTGAGTTGGCCTATGCGCCAT
ATAAGAAGGAAGGGGTGATATAAGAGTGTATTGAAATATTCACCTAGCTT
GTCAGAACATGGTTGCCGTTACAGCGTagtgttcttttttcaaaagcacA
TGGTCAACTGTATCTGGTATGATATCGCCAACCAGAATCACTCATTGACC
TCATATGATTATGTAACTCATATCACCACTGCAATTGTTTTACATGTTCA
GGTTACAGGCAGCCGTACCTTCAGACGGGCGGAGATACGACGTATAAAGT
GCTTCACGATCACGACTTCTTGTACGATTCATCACTTCCGACGGCGTTGA
ACGAAGGCTTGTGGCCGTATACGCTAGACTATAAGATTCATAAGTGTGTC
ATTCCTCCGTGCCCAAAAGGTGAGCAGTTTATTAGTCAAATTATGTATAG
ATTTTGGTGATAtttctaaaaatcaaattttcaaagtgaCCAAGAACTTG
AatagatttgaaaaatgtttttttcgaaatcctTGACTGTGAGGGAAACA
ACATGCACAGACTCTACCGCTTGCGTCTGCAGAGTCACAATACTTTCCAG
GTCAGTAATTCCTTCTCCCTCACTCGTTGGATCCATTCCGAGATATCGGA
AAGTATGTATATATTTCTCTGAGTTTGAACCATAAGTGATTTTGTGGTTT
AGAGATGCTGGCTAAATCGATCTATCCAGCCAGGGTGCattatgcagtgc
tgacgagtcctaataaggacaaaaagcatatgctgctctgccacccaaat
gtcctgagtgaatatagttgggcagaaattcttatttcttcacatatata
caTCTATCTAAATTCCGTTTAACTGTAGGGAGTTACGATGGCTTATGGCA
GGTACCCATTGAAATCTATCAAAACCAAATAACTGGCCACAAATGCTCCC
TCTTCGATGAGCCATATTGTTGGTATAATCTTTTGACGGAAGATCAAACC
TACGATTATTTCATGGCTAATTTTGAGCGACATTTCAGTGAAGGGCGGAC
CTCACCCTTCCCGATGGCGGGACATCTTTTGAATCTCCTCAACGGAGTTA
ACAAAACCAGGCGAGAAGGTAAGAGAAcccttctttctttttgtaagatG
TGCTCAAAATATCTTTATAACTCTTCTTCGCCAATAAGACCTTTACCGTT
ATGTCAAGAGATCAGCTTACAGAGATGCTTGAGAAGTCATAACAGGTACT
TGCTAAGAATAAAAGACTTATTTCAGAGCTTAATTTCACAGCAAAAACAA
TCTCATCCCTACAAAACAGGTCTATTTTCGGCAACATTAGGATTAAGTTT
GTGATACCTTGAAGTACCAGCAaatcttgttttcttgttttttttgttgt
cacTATTAACAACGTTAAAGAGAATGGTACTCAAGTGTGACTAGTTCTTG
ACCGCTGACCAAAGTCAAAAATGAGCCCAACTCTGCCGGACACGCATGTT
TTTACCggctttcattttttctatcaTATTAGGTATGATCCGTTTCATGG
ACACCCTTTTGAAAAAAGACGATGTTTATTTCGTTACCATGACAGAACTC
ATTCGCTG

Coding sequence (CDS) from alignment at sc0001472:38976..42133+

>TCONS_00036488 ID=TCONS_00036488|Name=TCONS_00036488|organism=Clytia hemisphaerica|type=CDS|length=5328bp|location=Sequence derived from alignment at sc0001472:38976..42133+ (Clytia hemisphaerica)
GGTGATTTAGCGGTAGACTGCGACCCAAAGAAGTGCAGCTCAAAGACGTG
TCGATGTCCATCAAATGTACCGCCATCCAGTATCAACTCAAAAGATGTTC
CAAAATTCGTCCTCTTGACCATGGATGACGATATGTCAAACTCAAAATAC
AACGCCATGCGAGATATCTTGGGTCAAAGAACAAATCCGAATGGATGTCC
AATCAAAGCTACCTTCTTTTTATCAACTCTTGGTGGTTTGGGTGAAATCA
GAAAACTACAATCTTTAGGTCATGAAATTGCATGTCACACAGAATCACAT
CGTAACAGCCAATCGTACTGGAAGCGTTCAAAGTATCAAACCTACAAACG
GGAAATCGTGGATTATCGAGACAAACTCTCCAAAGCTGGTATAAAAGAAG
TCAGAGGTTACAGGCAGCCGTACCTTCAGACGGGCGGAGATACGACGTAT
AAAGTGCTTCACGATCACGACTTCTTGTACGATTCATCACTTCCGACGGC
GTTGAACGAAGGCTTGTGGCCGTATACGCTAGACTATAAGATTCATAAGT
GTGTCATTCCTCCGTGCCCAAAAGGGAGTTACGATGGCTTATGGCAGGTA
CCCATTGAAATCTATCAAAACCAAATAACTGGCCACAAATGCTCCCTCTT
CGATGAGCCATATTGTTGGTATAATCTTTTGACGGAAGATCAAACCTACG
ATTATTTCATGGCTAATTTTGAGCGACATTTCAGTGAAGGGCGGACCTCA
CCCTTCCCGATGGCGGGACATCTTTTGAATCTCCTCAACGGAGTTAACAA
AACCAGGCGAGAAGGTATGATCCGTTTCATGGACACCCTTTTGAAAAAAG
ACGATGTTTATTTCGTTACCATGACAGAACTCATTCGCGGTGATTTAGCG
GTAGACTGCGACCCAAAGAAGTGCAGCTCAAAGACGTGTCGATGTCCATC
AAATGTACCGCCATCCAGTATCAACTCAAAAGATGTTCCAAAATTCGTCC
TCTTGACCATGGATGACGATATGTCAAACTCAAAATACAACGCCATGCGA
GATATCTTGGGTCAAAGAACAAATCCGAATGGATGTCCAATCAAAGCTAC
CTTCTTTTTATCAACTCTTGGTGGTTTGGGTGAAATCAGAAAACTACAAT
CTTTAGGTCATGAAATTGCATGTCACACAGAATCACATCGTAACAGCCAA
TCGTACTGGAAGCGTTCAAAGTATCAAACCTACAAACGGGAAATCGTGGA
TTATCGAGACAAACTCTCCAAAGCTGGTATAAAAGAAGTCAGAGGTTACA
GGCAGCCGTACCTTCAGACGGGCGGAGATACGACGTATAAAGTGCTTCAC
GATCACGACTTCTTGTACGATTCATCACTTCCGACGGCGTTGAACGAAGG
CTTGTGGCCGTATACGCTAGACTATAAGATTCATAAGTGTGTCATTCCTC
CGTGCCCAAAAGGGAGTTACGATGGCTTATGGCAGGTACCCATTGAAATC
TATCAAAACCAAATAACTGGCCACAAATGCTCCCTCTTCGATGAGCCATA
TTGTTGGTATAATCTTTTGACGGAAGATCAAACCTACGATTATTTCATGG
CTAATTTTGAGCGACATTTCAGTGAAGGGCGGACCTCACCCTTCCCGATG
GCGGGACATCTTTTGAATCTCCTCAACGGAGTTAACAAAACCAGGCGAGA
AGGTATGATCCGTTTCATGGACACCCTTTTGAAAAAAGACGATGTTTATT
TCGTTACCATGACAGAACTCATTCGCGGTGATTTAGCGGTAGACTGCGAC
CCAAAGAAGTGCAGCTCAAAGACGTGTCGATGTCCATCAAATGTACCGCC
ATCCAGTATCAACTCAAAAGATGTTCCAAAATTCGTCCTCTTGACCATGG
ATGACGATATGTCAAACTCAAAATACAACGCCATGCGAGATATCTTGGGT
CAAAGAACAAATCCGAATGGATGTCCAATCAAAGCTACCTTCTTTTTATC
AACTCTTGGTGGTTTGGGTGAAATCAGAAAACTACAATCTTTAGGTCATG
AAATTGCATGTCACACAGAATCACATCGTAACAGCCAATCGTACTGGAAG
CGTTCAAAGTATCAAACCTACAAACGGGAAATCGTGGATTATCGAGACAA
ACTCTCCAAAGCTGGTATAAAAGAAGTCAGAGGTTACAGGCAGCCGTACC
TTCAGACGGGCGGAGATACGACGTATAAAGTGCTTCACGATCACGACTTC
TTGTACGATTCATCACTTCCGACGGCGTTGAACGAAGGCTTGTGGCCGTA
TACGCTAGACTATAAGATTCATAAGTGTGTCATTCCTCCGTGCCCAAAAG
GGAGTTACGATGGCTTATGGCAGGTACCCATTGAAATCTATCAAAACCAA
ATAACTGGCCACAAATGCTCCCTCTTCGATGAGCCATATTGTTGGTATAA
TCTTTTGACGGAAGATCAAACCTACGATTATTTCATGGCTAATTTTGAGC
GACATTTCAGTGAAGGGCGGACCTCACCCTTCCCGATGGCGGGACATCTT
TTGAATCTCCTCAACGGAGTTAACAAAACCAGGCGAGAAGGTATGATCCG
TTTCATGGACACCCTTTTGAAAAAAGACGATGTTTATTTCGTTACCATGA
CAGAACTCATTCGCGGTGATTTAGCGGTAGACTGCGACCCAAAGAAGTGC
AGCTCAAAGACGTGTCGATGTCCATCAAATGTACCGCCATCCAGTATCAA
CTCAAAAGATGTTCCAAAATTCGTCCTCTTGACCATGGATGACGATATGT
CAAACTCAAAATACAACGCCATGCGAGATATCTTGGGTCAAAGAACAAAT
CCGAATGGATGTCCAATCAAAGCTACCTTCTTTTTATCAACTCTTGGTGG
TTTGGGTGAAATCAGAAAACTACAATCTTTAGGTCATGAAATTGCATGTC
ACACAGAATCACATCGTAACAGCCAATCGTACTGGAAGCGTTCAAAGTAT
CAAACCTACAAACGGGAAATCGTGGATTATCGAGACAAACTCTCCAAAGC
TGGTATAAAAGAAGTCAGAGGTTACAGGCAGCCGTACCTTCAGACGGGCG
GAGATACGACGTATAAAGTGCTTCACGATCACGACTTCTTGTACGATTCA
TCACTTCCGACGGCGTTGAACGAAGGCTTGTGGCCGTATACGCTAGACTA
TAAGATTCATAAGTGTGTCATTCCTCCGTGCCCAAAAGGGAGTTACGATG
GCTTATGGCAGGTACCCATTGAAATCTATCAAAACCAAATAACTGGCCAC
AAATGCTCCCTCTTCGATGAGCCATATTGTTGGTATAATCTTTTGACGGA
AGATCAAACCTACGATTATTTCATGGCTAATTTTGAGCGACATTTCAGTG
AAGGGCGGACCTCACCCTTCCCGATGGCGGGACATCTTTTGAATCTCCTC
AACGGAGTTAACAAAACCAGGCGAGAAGGTATGATCCGTTTCATGGACAC
CCTTTTGAAAAAAGACGATGTTTATTTCGTTACCATGACAGAACTCATTC
GCGGTGATTTAGCGGTAGACTGCGACCCAAAGAAGTGCAGCTCAAAGACG
TGTCGATGTCCATCAAATGTACCGCCATCCAGTATCAACTCAAAAGATGT
TCCAAAATTCGTCCTCTTGACCATGGATGACGATATGTCAAACTCAAAAT
ACAACGCCATGCGAGATATCTTGGGTCAAAGAACAAATCCGAATGGATGT
CCAATCAAAGCTACCTTCTTTTTATCAACTCTTGGTGGTTTGGGTGAAAT
CAGAAAACTACAATCTTTAGGTCATGAAATTGCATGTCACACAGAATCAC
ATCGTAACAGCCAATCGTACTGGAAGCGTTCAAAGTATCAAACCTACAAA
CGGGAAATCGTGGATTATCGAGACAAACTCTCCAAAGCTGGTATAAAAGA
AGTCAGAGGTTACAGGCAGCCGTACCTTCAGACGGGCGGAGATACGACGT
ATAAAGTGCTTCACGATCACGACTTCTTGTACGATTCATCACTTCCGACG
GCGTTGAACGAAGGCTTGTGGCCGTATACGCTAGACTATAAGATTCATAA
GTGTGTCATTCCTCCGTGCCCAAAAGGGAGTTACGATGGCTTATGGCAGG
TACCCATTGAAATCTATCAAAACCAAATAACTGGCCACAAATGCTCCCTC
TTCGATGAGCCATATTGTTGGTATAATCTTTTGACGGAAGATCAAACCTA
CGATTATTTCATGGCTAATTTTGAGCGACATTTCAGTGAAGGGCGGACCT
CACCCTTCCCGATGGCGGGACATCTTTTGAATCTCCTCAACGGAGTTAAC
AAAACCAGGCGAGAAGGTATGATCCGTTTCATGGACACCCTTTTGAAAAA
AGACGATGTTTATTTCGTTACCATGACAGAACTCATTCGCGGTGATTTAG
CGGTAGACTGCGACCCAAAGAAGTGCAGCTCAAAGACGTGTCGATGTCCA
TCAAATGTACCGCCATCCAGTATCAACTCAAAAGATGTTCCAAAATTCGT
CCTCTTGACCATGGATGACGATATGTCAAACTCAAAATACAACGCCATGC
GAGATATCTTGGGTCAAAGAACAAATCCGAATGGATGTCCAATCAAAGCT
ACCTTCTTTTTATCAACTCTTGGTGGTTTGGGTGAAATCAGAAAACTACA
ATCTTTAGGTCATGAAATTGCATGTCACACAGAATCACATCGTAACAGCC
AATCGTACTGGAAGCGTTCAAAGTATCAAACCTACAAACGGGAAATCGTG
GATTATCGAGACAAACTCTCCAAAGCTGGTATAAAAGAAGTCAGAGGTTA
CAGGCAGCCGTACCTTCAGACGGGCGGAGATACGACGTATAAAGTGCTTC
ACGATCACGACTTCTTGTACGATTCATCACTTCCGACGGCGTTGAACGAA
GGCTTGTGGCCGTATACGCTAGACTATAAGATTCATAAGTGTGTCATTCC
TCCGTGCCCAAAAGGGAGTTACGATGGCTTATGGCAGGTACCCATTGAAA
TCTATCAAAACCAAATAACTGGCCACAAATGCTCCCTCTTCGATGAGCCA
TATTGTTGGTATAATCTTTTGACGGAAGATCAAACCTACGATTATTTCAT
GGCTAATTTTGAGCGACATTTCAGTGAAGGGCGGACCTCACCCTTCCCGA
TGGCGGGACATCTTTTGAATCTCCTCAACGGAGTTAACAAAACCAGGCGA
GAAGGTATGATCCGTTTCATGGACACCCTTTTGAAAAAAGACGATGTTTA
TTTCGTTACCATGACAGAACTCATTCGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021511	XLOC_021511	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00036488-protein	TCONS_00036488-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001472	supercontig	sc0001472:38976..42133 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.840592	0.608893	0.467475	0.500165	0.175089	0.704846	0.368384	0.242161	1.00184	2.00909	15.3967	3.03871	5.73214	8.11345	0.165653	0.346687	0.0502224	0.0734902	0	0	0	0	0.64103	0	0.115308	0.23496

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002509	NODB_dom
IPR011330	Glyco_hydro/deAcase_b/a-brl

Vocabulary: **Molecular Function**
Term	Definition
GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00036488 vs. Swiss-Prot (Human)

BLAST of TCONS_00036488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00036488 (transcript) - C. hemisphaerica