|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036407 ID=TCONS_00036407|Name=TCONS_00036407|organism=Clytia hemisphaerica|type=transcript|length=3730bp
GTGAAAGTGAAGAATTACCAGATTTAGGTCCAATTAATGATGATATTGAT
GAAcgtgttttcaatgaaaacacTGAAATGAGAAGCTATTTACCATCCAA
ACTAAAGAAAGCAAAGGAAGCTGACTtaacaaaaagtgaaattttgaata
CGAAAACTGAAATTGATATTGGAAGCTCTCCTCTTAGTGAATTCAATACA
CCATATTTAGCCAGTCTTGCGTTTCCAACATTGTTTCCTGACACAAAAGG
AGACCCAACCAACCCTGCAATCATTAGGGAAATAGCAAAGAGTGAAACAG
AGggttttgctgaaaaattaaaacatttaattaaatttgcagaaattgat
GACAAAGGAAAGtggttttacagattttcatcTCATCCAAGATTTTCTTT
TTGGGGTTTCAATATGTTATATAGAAAGAGATTAATCAATCAaggaaatt
ttttcatcaaacaaaACCCAGGTGAAGCAAACTTGAGTGTTGAAGAATTA
TGTGATCTTGTAAGAGACAATGATCACTATGTAGTTATGAAAAAATTGCA
AAGATACTCAAAGAATGTCACAGGTACCAATGCCTATTGGTGTGATGTCA
AAGAAAAGTTAAAAGCAACAATAACACAAATGGGTACACCAACAATTTTT
TGGACACTCAGTATGGCTGACTTTCACTGGCCAGACATCCATGACTTATT
TCTTTCTAATGAATCTGAAAATACAGATTTTAGACAAAATATAATTGATA
ACCCACATATAGTAGATTGGCTATTTACTGAACGTGttaaaaattttgtg
aaacACTGGCTGTATGAATCGTTAAATGCTGAATGGCATTGGTACAGGTT
TGAGTTTGCAGTCATGCGTGGCTCAATCCATTGCCATGGCttagcaaaat
taaaaagtgatcCAGGAATTTGTGAATTGACGGAAAAGGCTCTGCAAGGT
TTTTTGGCTAAAGaaactttatcaaatcaaaCAGAGATTGATCTTGAAAA
TAATACTCTGTTACATGTTGCTATTATGGAAGGAAATAGCGCAGAAAGGC
AAATTTGTGACTATGTTGATTCTTTAATGACAGCTATCAATCCAATTGAT
GGACCTGCTAATGAATGGGAAAAGCCAAGTGTTCATCCCTGCAAAATTAG
GCTAGAGGATATACCTGAGGAAGATTTAGAACAAGATTACATAGATCTAG
CTAATAGTGTGCAGCGACACACAAAATGTAGTTCTGCTTACTGTCTCCGA
ACTAAAAATGACAAACAGGAGTGTCGTTTTAAATTTCCTTTTGAAAGTTG
TGAGAAAACACatttaatatttgaaaaattgaaattgaaaggaGGTAAAG
AGAAGTATGTTCCCAATATTGTTTTGAAGAGAAATGATCCTAGAATGAAT
AGACACCAACAGTTGCAATTGCAATCATGGAGAGCTAACTGTGATATACA
AATAATACTTGACCACAATGCTTGTTTGAATTATATTGTTAAATATGCTT
CGAAGGCAGAAAAAATATCTGATGTTGCAAAAGAAGCTTTTACATCTGTC
ATTGAGAATCTTTCAGGAGAAGAGACCTCTggtaatatttttcgaaaatt
gattaTTAAATCTGTTGGTGAAAGAGACTTTAGCGCTCAAGAAGTCATGC
ATCAAATTATGTCTTTAAAATTACATTGTTcttcatttgaagtaataagt
TGTTCTCTTGAGGGCTCAAGGCAAATAAAAATAGCTAATGGCGAACTTGA
AACCAAAACATCTTTTTTAGACGATTATGCCTCTAGATATATGCATGAAG
ATGATGAAATTAGACAAAGCAATCTTAtcgattttatttcaaaatggaaa
ttaaatgcaaaagacaaaaagattcaaaaaagaaataagtcaGTAGTTGT
TCGTACTTTTCCAAACTACAGTCCAAACCCCAAAAATGGCAGTTATCCTT
TGTTTTGTAAAtttcaattgatcaaatacaAACCATGGAAGGATACTACG
GACACTCTATGGGAAGGGTTACAAGCAACGAATGAGACATTCTGCCAGAA
ATGGAAGGAGTTTTTAAACAGTCCTTTAGGAAAAGAATTAGTCCCAGATT
GGAAAAGGCATTACATTAATGCAAACAACTCTGAACATCAGGTTGAGAAT
GAAGAGAGTGATGAAAATGATGAACAGAACGAAAATAGTTTTTTACGTGA
AGATTGGATGGAAATAGCGGATGTAAATTCAGTTCCTAGTAACATTTCTG
AAAATCGAGAATATTGGACAGATTCCTTTGACTCTTATACTCAAGAACAA
ATTAATTCGATGCCATTTTGGattgaagaaatgaaaaattctttccaaaa
caaaaatacCACTGATTACAATCAATatcaagtagaaaatttgaatgcCG
AACAACTTCAGGCTTATAATATTGTCCATGATCATGCCAGTAAAGCAGAC
GAAGAACCCTTGCTAATGATAATTACTGGGATTGCAGGAAGTGGAAAGTC
ATATTTAATCAATTGTATTAAGAAACTTCTTGATAAAAAGTGCCTATTGA
CATCTTATTTTGGTATCGCTGCATTCAACATTAATGGACGAACATTGCAT
AGTACTCTTCGATTGCCAATTAGAGACAAATTAAATCATGAACTCAAAGG
AAATTCGCTTGGCAATTTACAAACCCGTCTTAAAGACGTAAAGTATATCA
TTATTGATGAATTCTCTGTAGTAGGTCAAAGGCTGCTAGGCTGGATAGAT
AGTCGATGTCGTCAGGCAACAGGAAAAGAAGAAACATTTTTTGGTGGAAT
ATCCATTATATTAGTAGGAGATGTTGCACAGTTACCACCCGTTATGGATG
ATGTATTGTATAATATCAAAGCAAAAAAAGGGAAAGCTACTGAAGGATTT
TTAGCCTATTGTTGTTTCAGAACTGTTGTAGAGCTTAAATCAAATATGCG
GTCAACTGGGGAGGATGTTTCTCAAAAGAAGTTTAGAAATGCTTTGAGGA
ATTTGAGAAATGGAAATTCAACAATCGAAGACTGGAACTTCTTCTTAACT
AGACAaccagaaaaaaactttattgacTATAATAATTGCACTAGGTTGTC
GTTTGCAAATGAGGCTGTGAATGAGCATAATAccaaaatgttagattctt
tgCAATCACCAATTGCAGTAATTAAAGCCAAAAATACACCGCCGAGTGCA
TCAAAATTATCATCAGAAGAATTTTCTTTAacaaataaagtttttctttc
taAAGGTGCTAGGGTTATGCTTACAAGAAATCTGTGGCCAGATGTAGGAC
TTTGTAATGGAAGTTTAGGTATTGTTAaagatataatatttcaaagaaat
cttcTGCCACCTTCACTTCCTATTGCTGTTATTGTTAAATTTGACAAATA
TACAGGGCCAAGCTTTTTTAACGAAGAAGATAATTGTGTCCCTATTGTGC
CTATCGTAGAAACATTATCTGATGATAACGTTCAGAAAGAAAGGATGCAG
ATACCTTTGAAACTTGCATGGGCTTTAACTATTCATAAATCTCAAGGTTT
AACTTTAGATAAAGTTGTAGTGGATTTAGGAAAGAGAGAAAGTATGGATG
GGTTAACTTACGTTGCATTGTCACGTGTTAGAAAATTAAAAGATATGGTT
ATTGAATCATTCCCatttgaaagaataaataaattgaGTAACAGTAAAAG
TTTTAAATATAGGATACAAGAAGAAAAAAG Run BLAST on NCBI protein sequence of TCONS_00036407-protein >TCONS_00036407-protein ID=TCONS_00036407-protein|Name=TCONS_00036407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1242bp
ESEELPDLGPINDDIDERVFNENTEMRSYLPSKLKKAKEADLTKSEILNT
KTEIDIGSSPLSEFNTPYLASLAFPTLFPDTKGDPTNPAIIREIAKSETE
GFAEKLKHLIKFAEIDDKGKWFYRFSSHPRFSFWGFNMLYRKRLINQGNF
FIKQNPGEANLSVEELCDLVRDNDHYVVMKKLQRYSKNVTGTNAYWCDVK
EKLKATITQMGTPTIFWTLSMADFHWPDIHDLFLSNESENTDFRQNIIDN
PHIVDWLFTERVKNFVKHWLYESLNAEWHWYRFEFAVMRGSIHCHGLAKL
KSDPGICELTEKALQGFLAKETLSNQTEIDLENNTLLHVAIMEGNSAERQ
ICDYVDSLMTAINPIDGPANEWEKPSVHPCKIRLEDIPEEDLEQDYIDLA
NSVQRHTKCSSAYCLRTKNDKQECRFKFPFESCEKTHLIFEKLKLKGGKE
KYVPNIVLKRNDPRMNRHQQLQLQSWRANCDIQIILDHNACLNYIVKYAS
KAEKISDVAKEAFTSVIENLSGEETSGNIFRKLIIKSVGERDFSAQEVMH
QIMSLKLHCSSFEVISCSLEGSRQIKIANGELETKTSFLDDYASRYMHED
DEIRQSNLIDFISKWKLNAKDKKIQKRNKSVVVRTFPNYSPNPKNGSYPL
FCKFQLIKYKPWKDTTDTLWEGLQATNETFCQKWKEFLNSPLGKELVPDW
KRHYINANNSEHQVENEESDENDEQNENSFLREDWMEIADVNSVPSNISE
NREYWTDSFDSYTQEQINSMPFWIEEMKNSFQNKNTTDYNQYQVENLNAE
QLQAYNIVHDHASKADEEPLLMIITGIAGSGKSYLINCIKKLLDKKCLLT
SYFGIAAFNINGRTLHSTLRLPIRDKLNHELKGNSLGNLQTRLKDVKYII
IDEFSVVGQRLLGWIDSRCRQATGKEETFFGGISIILVGDVAQLPPVMDD
VLYNIKAKKGKATEGFLAYCCFRTVVELKSNMRSTGEDVSQKKFRNALRN
LRNGNSTIEDWNFFLTRQPEKNFIDYNNCTRLSFANEAVNEHNTKMLDSL
QSPIAVIKAKNTPPSASKLSSEEFSLTNKVFLSKGARVMLTRNLWPDVGL
CNGSLGIVKDIIFQRNLLPPSLPIAVIVKFDKYTGPSFFNEEDNCVPIVP
IVETLSDDNVQKERMQIPLKLAWALTIHKSQGLTLDKVVVDLGKRESMDG
LTYVALSRVRKLKDMVIESFPFERINKLSNSKSFKYRIQEEK Run BLAST on NCBI transcript from alignment at sc0001454:3062..6791 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036407 ID=TCONS_00036407|Name=TCONS_00036407|organism=Clytia hemisphaerica|type=transcript|length=3730bp|location=Sequence derived from alignment at sc0001454:3062..6791 (Clytia hemisphaerica)
CTTTTTTCTTCTTGTATCCTATATTTAAAACTTTTACTGTTACtcaattt
atttattctttcaaatGGGAATGATTCAATAACCATATCTTTTAATTTTC
TAACACGTGACAATGCAACGTAAGTTAACCCATCCATACTTTCTCTCTTT
CCTAAATCCACTACAACTTTATCTAAAGTTAAACCTTGAGATTTATGAAT
AGTTAAAGCCCATGCAAGTTTCAAAGGTATCTGCATCCTTTCTTTCTGAA
CGTTATCATCAGATAATGTTTCTACGATAGGCACAATAGGGACACAATTA
TCTTCTTCGTTAAAAAAGCTTGGCCCTGTATATTTGTCAAATTTAACAAT
AACAGCAATAGGAAGTGAAGGTGGCAgaagatttctttgaaatattatat
cttTAACAATACCTAAACTTCCATTACAAAGTCCTACATCTGGCCACAGA
TTTCTTGTAAGCATAACCCTAGCACCTTtagaaagaaaaactttatttgt
TAAAGAAAATTCTTCTGATGATAATTTTGATGCACTCGGCGGTGTATTTT
TGGCTTTAATTACTGCAATTGGTGATTGcaaagaatctaacattttggTA
TTATGCTCATTCACAGCCTCATTTGCAAACGACAACCTAGTGCAATTATT
ATAgtcaataaagtttttttctggtTGTCTAGTTAAGAAGAAGTTCCAGT
CTTCGATTGTTGAATTTCCATTTCTCAAATTCCTCAAAGCATTTCTAAAC
TTCTTTTGAGAAACATCCTCCCCAGTTGACCGCATATTTGATTTAAGCTC
TACAACAGTTCTGAAACAACAATAGGCTAAAAATCCTTCAGTAGCTTTCC
CTTTTTTTGCTTTGATATTATACAATACATCATCCATAACGGGTGGTAAC
TGTGCAACATCTCCTACTAATATAATGGATATTCCACCAAAAAATGTTTC
TTCTTTTCCTGTTGCCTGACGACATCGACTATCTATCCAGCCTAGCAGCC
TTTGACCTACTACAGAGAATTCATCAATAATGATATACTTTACGTCTTTA
AGACGGGTTTGTAAATTGCCAAGCGAATTTCCTTTGAGTTCATGATTTAA
TTTGTCTCTAATTGGCAATCGAAGAGTACTATGCAATGTTCGTCCATTAA
TGTTGAATGCAGCGATACCAAAATAAGATGTCAATAGGCACTTTTTATCA
AGAAGTTTCTTAATACAATTGATTAAATATGACTTTCCACTTCCTGCAAT
CCCAGTAATTATCATTAGCAAGGGTTCTTCGTCTGCTTTACTGGCATGAT
CATGGACAATATTATAAGCCTGAAGTTGTTCGgcattcaaattttctact
tgatATTGATTGTAATCAGTGgtatttttgttttggaaagaatttttcat
ttcttcaatCCAAAATGGCATCGAATTAATTTGTTCTTGAGTATAAGAGT
CAAAGGAATCTGTCCAATATTCTCGATTTTCAGAAATGTTACTAGGAACT
GAATTTACATCCGCTATTTCCATCCAATCTTCACGTAAAAAACTATTTTC
GTTCTGTTCATCATTTTCATCACTCTCTTCATTCTCAACCTGATGTTCAG
AGTTGTTTGCATTAATGTAATGCCTTTTCCAATCTGGGACTAATTCTTTT
CCTAAAGGACTGTTTAAAAACTCCTTCCATTTCTGGCAGAATGTCTCATT
CGTTGCTTGTAACCCTTCCCATAGAGTGTCCGTAGTATCCTTCCATGGTT
tgtatttgatcaattgaaaTTTACAAAACAAAGGATAACTGCCATTTTTG
GGGTTTGGACTGTAGTTTGGAAAAGTACGAACAACTACtgacttatttct
tttttgaatctttttgtcttttgcatttaatttccattttgaaataaaat
cgaTAAGATTGCTTTGTCTAATTTCATCATCTTCATGCATATATCTAGAG
GCATAATCGTCTAAAAAAGATGTTTTGGTTTCAAGTTCGCCATTAGCTAT
TTTTATTTGCCTTGAGCCCTCAAGAGAACAacttattacttcaaatgaag
AACAATGTAATTTTAAAGACATAATTTGATGCATGACTTCTTGAGCGCTA
AAGTCTCTTTCACCAACAGATTTAAtaatcaattttcgaaaaatattacc
AGAGGTCTCTTCTCCTGAAAGATTCTCAATGACAGATGTAAAAGCTTCTT
TTGCAACATCAGATATTTTTTCTGCCTTCGAAGCATATTTAACAATATAA
TTCAAACAAGCATTGTGGTCAAGTATTATTTGTATATCACAGTTAGCTCT
CCATGATTGCAATTGCAACTGTTGGTGTCTATTCATTCTAGGATCATTTC
TCTTCAAAACAATATTGGGAACATACTTCTCTTTACCtcctttcaatttc
aatttttcaaatattaaatGTGTTTTCTCACAACTTTCAAAAGGAAATTT
AAAACGACACTCCTGTTTGTCATTTTTAGTTCGGAGACAGTAAGCAGAAC
TACATTTTGTGTGTCGCTGCACACTATTAGCTAGATCTATGTAATCTTGT
TCTAAATCTTCCTCAGGTATATCCTCTAGCCTAATTTTGCAGGGATGAAC
ACTTGGCTTTTCCCATTCATTAGCAGGTCCATCAATTGGATTGATAGCTG
TCATTAAAGAATCAACATAGTCACAAATTTGCCTTTCTGCGCTATTTCCT
TCCATAATAGCAACATGTAACAGAGTATTATTTTCAAGATCAATCTCTGt
ttgatttgataaagtttCTTTAGCCAAAAAACCTTGCAGAGCCTTTTCCG
TCAATTCACAAATTCCTGgatcactttttaattttgctaaGCCATGGCAA
TGGATTGAGCCACGCATGACTGCAAACTCAAACCTGTACCAATGCCATTC
AGCATTTAACGATTCATACAGCCAGTgtttcacaaaatttttaaCACGTT
CAGTAAATAGCCAATCTACTATATGTGGGTTATCAATTATATTTTGTCTA
AAATCTGTATTTTCAGATTCATTAGAAAGAAATAAGTCATGGATGTCTGG
CCAGTGAAAGTCAGCCATACTGAGTGTCCAAAAAATTGTTGGTGTACCCA
TTTGTGTTATTGTTGCTTTTAACTTTTCTTTGACATCACACCAATAGGCA
TTGGTACCTGTGACATTCTTTGAGTATCTTTGCAATTTTTTCATAACTAC
ATAGTGATCATTGTCTCTTACAAGATCACATAATTCTTCAACACTCAAGT
TTGCTTCACCTGGGTtttgtttgatgaaaaaatttcctTGATTGATTAAT
CTCTTTCTATATAACATATTGAAACCCCAAAAAGAAAATCTTGGATGAga
tgaaaatctgtaaaaccaCTTTCCTTTGTCatcaatttctgcaaatttaa
ttaaatgttttaatttttcagcaaaaccCTCTGTTTCACTCTTTGCTATT
TCCCTAATGATTGCAGGGTTGGTTGGGTCTCCTTTTGTGTCAGGAAACAA
TGTTGGAAACGCAAGACTGGCTAAATATGGTGTATTGAATTCACTAAGAG
GAGAGCTTCCAATATCAATTTCAGTTTTCGtattcaaaatttcacttttt
gttaAGTCAGCTTCCTTTGCTTTCTTTAGTTTGGATGGTAAATAGCTTCT
CATTTCAgtgttttcattgaaaacacgTTCATCAATATCATCATTAATTG
GACCTAAATCTGGTAATTCTTCACTTTCAC Coding sequence (CDS) from alignment at sc0001454:3062..6791 >TCONS_00036407 ID=TCONS_00036407|Name=TCONS_00036407|organism=Clytia hemisphaerica|type=CDS|length=3726bp|location=Sequence derived from alignment at sc0001454:3062..6791 (Clytia hemisphaerica)
TTTTTCTTCTTGTATCCTATATTTAAAACTTTTACTGTTACtcaatttat
ttattctttcaaatGGGAATGATTCAATAACCATATCTTTTAATTTTCTA
ACACGTGACAATGCAACGTAAGTTAACCCATCCATACTTTCTCTCTTTCC
TAAATCCACTACAACTTTATCTAAAGTTAAACCTTGAGATTTATGAATAG
TTAAAGCCCATGCAAGTTTCAAAGGTATCTGCATCCTTTCTTTCTGAACG
TTATCATCAGATAATGTTTCTACGATAGGCACAATAGGGACACAATTATC
TTCTTCGTTAAAAAAGCTTGGCCCTGTATATTTGTCAAATTTAACAATAA
CAGCAATAGGAAGTGAAGGTGGCAgaagatttctttgaaatattatatct
tTAACAATACCTAAACTTCCATTACAAAGTCCTACATCTGGCCACAGATT
TCTTGTAAGCATAACCCTAGCACCTTtagaaagaaaaactttatttgtTA
AAGAAAATTCTTCTGATGATAATTTTGATGCACTCGGCGGTGTATTTTTG
GCTTTAATTACTGCAATTGGTGATTGcaaagaatctaacattttggTATT
ATGCTCATTCACAGCCTCATTTGCAAACGACAACCTAGTGCAATTATTAT
AgtcaataaagtttttttctggtTGTCTAGTTAAGAAGAAGTTCCAGTCT
TCGATTGTTGAATTTCCATTTCTCAAATTCCTCAAAGCATTTCTAAACTT
CTTTTGAGAAACATCCTCCCCAGTTGACCGCATATTTGATTTAAGCTCTA
CAACAGTTCTGAAACAACAATAGGCTAAAAATCCTTCAGTAGCTTTCCCT
TTTTTTGCTTTGATATTATACAATACATCATCCATAACGGGTGGTAACTG
TGCAACATCTCCTACTAATATAATGGATATTCCACCAAAAAATGTTTCTT
CTTTTCCTGTTGCCTGACGACATCGACTATCTATCCAGCCTAGCAGCCTT
TGACCTACTACAGAGAATTCATCAATAATGATATACTTTACGTCTTTAAG
ACGGGTTTGTAAATTGCCAAGCGAATTTCCTTTGAGTTCATGATTTAATT
TGTCTCTAATTGGCAATCGAAGAGTACTATGCAATGTTCGTCCATTAATG
TTGAATGCAGCGATACCAAAATAAGATGTCAATAGGCACTTTTTATCAAG
AAGTTTCTTAATACAATTGATTAAATATGACTTTCCACTTCCTGCAATCC
CAGTAATTATCATTAGCAAGGGTTCTTCGTCTGCTTTACTGGCATGATCA
TGGACAATATTATAAGCCTGAAGTTGTTCGgcattcaaattttctacttg
atATTGATTGTAATCAGTGgtatttttgttttggaaagaatttttcattt
cttcaatCCAAAATGGCATCGAATTAATTTGTTCTTGAGTATAAGAGTCA
AAGGAATCTGTCCAATATTCTCGATTTTCAGAAATGTTACTAGGAACTGA
ATTTACATCCGCTATTTCCATCCAATCTTCACGTAAAAAACTATTTTCGT
TCTGTTCATCATTTTCATCACTCTCTTCATTCTCAACCTGATGTTCAGAG
TTGTTTGCATTAATGTAATGCCTTTTCCAATCTGGGACTAATTCTTTTCC
TAAAGGACTGTTTAAAAACTCCTTCCATTTCTGGCAGAATGTCTCATTCG
TTGCTTGTAACCCTTCCCATAGAGTGTCCGTAGTATCCTTCCATGGTTtg
tatttgatcaattgaaaTTTACAAAACAAAGGATAACTGCCATTTTTGGG
GTTTGGACTGTAGTTTGGAAAAGTACGAACAACTACtgacttatttcttt
tttgaatctttttgtcttttgcatttaatttccattttgaaataaaatcg
aTAAGATTGCTTTGTCTAATTTCATCATCTTCATGCATATATCTAGAGGC
ATAATCGTCTAAAAAAGATGTTTTGGTTTCAAGTTCGCCATTAGCTATTT
TTATTTGCCTTGAGCCCTCAAGAGAACAacttattacttcaaatgaagAA
CAATGTAATTTTAAAGACATAATTTGATGCATGACTTCTTGAGCGCTAAA
GTCTCTTTCACCAACAGATTTAAtaatcaattttcgaaaaatattaccAG
AGGTCTCTTCTCCTGAAAGATTCTCAATGACAGATGTAAAAGCTTCTTTT
GCAACATCAGATATTTTTTCTGCCTTCGAAGCATATTTAACAATATAATT
CAAACAAGCATTGTGGTCAAGTATTATTTGTATATCACAGTTAGCTCTCC
ATGATTGCAATTGCAACTGTTGGTGTCTATTCATTCTAGGATCATTTCTC
TTCAAAACAATATTGGGAACATACTTCTCTTTACCtcctttcaatttcaa
tttttcaaatattaaatGTGTTTTCTCACAACTTTCAAAAGGAAATTTAA
AACGACACTCCTGTTTGTCATTTTTAGTTCGGAGACAGTAAGCAGAACTA
CATTTTGTGTGTCGCTGCACACTATTAGCTAGATCTATGTAATCTTGTTC
TAAATCTTCCTCAGGTATATCCTCTAGCCTAATTTTGCAGGGATGAACAC
TTGGCTTTTCCCATTCATTAGCAGGTCCATCAATTGGATTGATAGCTGTC
ATTAAAGAATCAACATAGTCACAAATTTGCCTTTCTGCGCTATTTCCTTC
CATAATAGCAACATGTAACAGAGTATTATTTTCAAGATCAATCTCTGttt
gatttgataaagtttCTTTAGCCAAAAAACCTTGCAGAGCCTTTTCCGTC
AATTCACAAATTCCTGgatcactttttaattttgctaaGCCATGGCAATG
GATTGAGCCACGCATGACTGCAAACTCAAACCTGTACCAATGCCATTCAG
CATTTAACGATTCATACAGCCAGTgtttcacaaaatttttaaCACGTTCA
GTAAATAGCCAATCTACTATATGTGGGTTATCAATTATATTTTGTCTAAA
ATCTGTATTTTCAGATTCATTAGAAAGAAATAAGTCATGGATGTCTGGCC
AGTGAAAGTCAGCCATACTGAGTGTCCAAAAAATTGTTGGTGTACCCATT
TGTGTTATTGTTGCTTTTAACTTTTCTTTGACATCACACCAATAGGCATT
GGTACCTGTGACATTCTTTGAGTATCTTTGCAATTTTTTCATAACTACAT
AGTGATCATTGTCTCTTACAAGATCACATAATTCTTCAACACTCAAGTTT
GCTTCACCTGGGTtttgtttgatgaaaaaatttcctTGATTGATTAATCT
CTTTCTATATAACATATTGAAACCCCAAAAAGAAAATCTTGGATGAgatg
aaaatctgtaaaaccaCTTTCCTTTGTCatcaatttctgcaaatttaatt
aaatgttttaatttttcagcaaaaccCTCTGTTTCACTCTTTGCTATTTC
CCTAATGATTGCAGGGTTGGTTGGGTCTCCTTTTGTGTCAGGAAACAATG
TTGGAAACGCAAGACTGGCTAAATATGGTGTATTGAATTCACTAAGAGGA
GAGCTTCCAATATCAATTTCAGTTTTCGtattcaaaatttcactttttgt
taAGTCAGCTTCCTTTGCTTTCTTTAGTTTGGATGGTAAATAGCTTCTCA
TTTCAgtgttttcattgaaaacacgTTCATCAATATCATCATTAATTGGA
CCTAAATCTGGTAATTCTTCACTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036407-exon-sc0001454-1491911889:3062..6791 | TCONS_00036407-exon-sc0001454-1491911889:3062..6791 | Clytia hemisphaerica | exon |
| TCONS_00036407-exon-sc0001454-1510915933:3062..6791 | TCONS_00036407-exon-sc0001454-1510915933:3062..6791 | Clytia hemisphaerica | exon |
| TCONS_00036407-exon-sc0001454-1575043694:3062..6791 | TCONS_00036407-exon-sc0001454-1575043694:3062..6791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001454 | supercontig | sc0001454:3062..6791 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0003678 | DNA helicase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003678 |
DNA helicase activity |
| molecular_function |
GO:0004386 |
helicase activity |
Blast
BLAST of TCONS_00036407 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 7.713e-26 Identity = 117/414 (28.26%), Postives = 181/414 (43.72%), Query Frame = 3
Query: 2466 MIITGIAGSGKSYLINCI-XXXXXXXXXXTSYFGIAAFNINGRTLHS-----TLRLPIRDKLN-HELKGNSLGNLQTRLKDVKYIIIDEFSVVGQRLLGWIDSRCRQATGKEETFFGGISIILVGDVAQLPPVMDDVLYNIKAKKGKATEGFLAYC-----CFRTVVELKSNMRSTGEDVSQKKFRNALRNLRNGNSTIEDWNFFLTRQPEKNFIDYNNCTRLSFANEAVNEHNTKMLDSLQSPIAVIKAKNTPPSASKLSSEEFSLTNKVFLSKGARVMLTRNLWPDVGLCNGSLGIVKDIIFQRNLLPPS---LPIAVIVKFDKYTGPSFFNEEDNCVPIVPIVETLSDDNVQKERMQIPLKLAWALTIHKSQGLTLDKVVVDLGKRESMDGLTYVALSRVRKLKDMVIESF 3662
+ TG AG+GKSYL+ I L + T+ G+AA +I G TLH+ + + P+ + + G G L + + ++IDE S+V L +++ R A ++ FGGI +I+ GD QLPPV KG F C +EL R + + F + L+ +R G + E K D TRL + V N + L L + +A ++ P + + ++ + L GA+VML +NL GL NG+ G+V + LP + ++ D++T V+ + R Q+PL+LAWA++IHKSQG+TLD V + LG R G YVALSR R L+ + + F
Sbjct: 224 IFFTGSAGTGKSYLLKRILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWL-----NCQRLVIDEISMVEADLFDKLEAVAR-AVRQQNKPFGGIQLIICGDFLQLPPVT----------KGSQPPRFCFQSKSWKRCVPVTLELTKVWRQ-----ADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEVIHADRWT-----------------VQATGGQLL--SRQQLPLQLAWAMSIHKSQGMTLDCVEISLG-RVFASGQAYVALSRARSLQGLRVLDF 596
The following BLAST results are available for this feature:
|
