TCONS_00036407-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00036407-protein
Unique NameTCONS_00036407-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1242

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00036407-protein ID=TCONS_00036407-protein|Name=TCONS_00036407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1242bp
ESEELPDLGPINDDIDERVFNENTEMRSYLPSKLKKAKEADLTKSEILNT
KTEIDIGSSPLSEFNTPYLASLAFPTLFPDTKGDPTNPAIIREIAKSETE
GFAEKLKHLIKFAEIDDKGKWFYRFSSHPRFSFWGFNMLYRKRLINQGNF
FIKQNPGEANLSVEELCDLVRDNDHYVVMKKLQRYSKNVTGTNAYWCDVK
EKLKATITQMGTPTIFWTLSMADFHWPDIHDLFLSNESENTDFRQNIIDN
PHIVDWLFTERVKNFVKHWLYESLNAEWHWYRFEFAVMRGSIHCHGLAKL
KSDPGICELTEKALQGFLAKETLSNQTEIDLENNTLLHVAIMEGNSAERQ
ICDYVDSLMTAINPIDGPANEWEKPSVHPCKIRLEDIPEEDLEQDYIDLA
NSVQRHTKCSSAYCLRTKNDKQECRFKFPFESCEKTHLIFEKLKLKGGKE
KYVPNIVLKRNDPRMNRHQQLQLQSWRANCDIQIILDHNACLNYIVKYAS
KAEKISDVAKEAFTSVIENLSGEETSGNIFRKLIIKSVGERDFSAQEVMH
QIMSLKLHCSSFEVISCSLEGSRQIKIANGELETKTSFLDDYASRYMHED
DEIRQSNLIDFISKWKLNAKDKKIQKRNKSVVVRTFPNYSPNPKNGSYPL
FCKFQLIKYKPWKDTTDTLWEGLQATNETFCQKWKEFLNSPLGKELVPDW
KRHYINANNSEHQVENEESDENDEQNENSFLREDWMEIADVNSVPSNISE
NREYWTDSFDSYTQEQINSMPFWIEEMKNSFQNKNTTDYNQYQVENLNAE
QLQAYNIVHDHASKADEEPLLMIITGIAGSGKSYLINCIKKLLDKKCLLT
SYFGIAAFNINGRTLHSTLRLPIRDKLNHELKGNSLGNLQTRLKDVKYII
IDEFSVVGQRLLGWIDSRCRQATGKEETFFGGISIILVGDVAQLPPVMDD
VLYNIKAKKGKATEGFLAYCCFRTVVELKSNMRSTGEDVSQKKFRNALRN
LRNGNSTIEDWNFFLTRQPEKNFIDYNNCTRLSFANEAVNEHNTKMLDSL
QSPIAVIKAKNTPPSASKLSSEEFSLTNKVFLSKGARVMLTRNLWPDVGL
CNGSLGIVKDIIFQRNLLPPSLPIAVIVKFDKYTGPSFFNEEDNCVPIVP
IVETLSDDNVQKERMQIPLKLAWALTIHKSQGLTLDKVVVDLGKRESMDG
LTYVALSRVRKLKDMVIESFPFERINKLSNSKSFKYRIQEEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021449XLOC_021449Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00036407TCONS_00036407Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003840DNA_helicase
IPR010285DNA_helicase_pif1-like
IPR025476Helitron_helicase-like
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO:0005524ATP binding
GO:0003678DNA helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0005524 ATP binding
molecular_function GO:0003678 DNA helicase activity
molecular_function GO:0004386 helicase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1237..1242
NoneNo IPR availableCOILSCoilCoilcoord: 707..734
NoneNo IPR availableGENE3D3.40.50.300coord: 775..872
e-value: 0.0027
score: 16.6
NoneNo IPR availableGENE3D3.40.50.300coord: 916..1216
e-value: 2.9E-11
score: 43.0
IPR003840DNA helicasePFAMPF02689Herpes_Helicasecoord: 1174..1236
e-value: 2.4E-7
score: 29.0
IPR010285DNA helicase Pif1-likePFAMPF05970PIF1coord: 797..1109
e-value: 6.5E-32
score: 111.0
IPR025476Helitron helicase-like domainPFAMPF14214Helitron_like_Ncoord: 123..297
e-value: 1.7E-25
score: 90.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 715..947
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 929..1219

Blast
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BLAST of TCONS_00036407-protein vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.326e-26
Identity = 117/414 (28.26%), Postives = 181/414 (43.72%), Query Frame = 0 
Query:  822 MIITGIAGSGKSYLINCI-KKLLDKKCLLTSYFGIAAFNINGRTLHS-----TLRLPIRDKLN-HELKGNSLGNLQTRLKDVKYIIIDEFSVVGQRLLGWIDSRCRQATGKEETFFGGISIILVGDVAQLPPVMDDVLYNIKAKKGKATEGFLAYC-----CFRTVVELKSNMRSTGEDVSQKKFRNALRNLRNGNSTIEDWNFFLTRQPEKNFIDYNNCTRLSFANEAVNEHNTKMLDSLQSPIAVIKAKNTPPSASKLSSEEFSLTNKVFLSKGARVMLTRNLWPDVGLCNGSLGIVKDIIFQRNLLPPS---LPIAVIVKFDKYTGPSFFNEEDNCVPIVPIVETLSDDNVQKERMQIPLKLAWALTIHKSQGLTLDKVVVDLGKRESMDGLTYVALSRVRKLKDMVIESF 1220
            +  TG AG+GKSYL+  I   L     + T+  G+AA +I G TLH+     + + P+   +   +  G   G L     + + ++IDE S+V   L   +++  R A  ++   FGGI +I+ GD  QLPPV           KG     F         C    +EL    R      + + F + L+ +R G  + E           K   D    TRL    + V   N + L  L   +   +A ++ P  +     +  ++  + L  GA+VML +NL    GL NG+ G+V     +   LP       +  ++  D++T                 V+      +   R Q+PL+LAWA++IHKSQG+TLD V + LG R    G  YVALSR R L+ + +  F
Sbjct:  224 IFFTGSAGTGKSYLLKRILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLAQCVALAQRPGVRQGWL-----NCQRLVIDEISMVEADLFDKLEAVAR-AVRQQNKPFGGIQLIICGDFLQLPPV----------TKGSQPPRFCFQSKSWKRCVPVTLELTKVWRQ-----ADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLCTHQDDVALTNERRLQELPGKVHRFEAMDSNPELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGFEAEGRGLPQVRFLCGVTEVIHADRWT-----------------VQATGGQLL--SRQQLPLQLAWAMSIHKSQGMTLDCVEISLG-RVFASGQAYVALSRARSLQGLRVLDF 596
The following BLAST results are available for this feature:
BLAST of TCONS_00036407-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIF12.326e-2628.26ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN... [more]
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