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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036366 ID=TCONS_00036366|Name=TCONS_00036366|organism=Clytia hemisphaerica|type=transcript|length=2037bpRun BLAST on NCBI protein sequence of TCONS_00036366-protein >TCONS_00036366-protein ID=TCONS_00036366-protein|Name=TCONS_00036366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp MSEQLKYIVDGLNDVPYNKNLNLISFDSLQPIQLLQILNDVMTNINPQQARun BLAST on NCBI transcript from alignment at sc0001449:1..16516- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036366 ID=TCONS_00036366|Name=TCONS_00036366|organism=Clytia hemisphaerica|type=transcript|length=16516bp|location=Sequence derived from alignment at sc0001449:1..16516- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001449:1..16516- >TCONS_00036366 ID=TCONS_00036366|Name=TCONS_00036366|organism=Clytia hemisphaerica|type=CDS|length=41976bp|location=Sequence derived from alignment at sc0001449:1..16516- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036366 vs. Swiss-Prot (Human)
Match: IFT81 (Intraflagellar transport protein 81 homolog OS=Homo sapiens GN=IFT81 PE=1 SV=1) HSP 1 Score: 655.596 bits (1690), Expect = 0.000e+0 Identity = 334/638 (52.35%), Postives = 479/638 (75.08%), Query Frame = 3
Query: 129 MSEQLKYIVDGLNDVPYNKNLNLISFDSLQPIQLLQILNDVMTNINPQQASDVRDEDPESRVMRMLQFLRVMKYKPKTDGGNVSAFRQGIVQGDKPVIYPILQWLLEQGAELKQRAYLARFLVKLDIPGEVLIDNEVSENHQLYLNLIEDFKEVHKESEQIKGSGMSAAEIKKDILSMEEEQEQLXXXXXXXXXXXXPVANKDNLLYAAKQLRQERERESNLADQQHAQKTSLSHAEQKINRMQMQIRDFKASSIGITPDGLIKRLEEENQVNVYLTTEKIPKELENKKQYIDTLQRVSDEPAMGQNELEVLNQSIKELSSEVNELVEKRMMRNDPIDDKLSVFRQQAAVIANKKKSAAEDLQEAMDEYHNAEGEIEERKDKLKDSDDVQMLKGDEFKRYVNKLRGISNIYKKKRQEISDLQAEVGVLSRSEEILKSRDDNSQAFLSNLEAKHGVSGFHDAQEELEKVSTMKGELDEKKGKTLEEMSQLVVQLTNSISEKKNSLAPVIKELRPLRQQAQELSVEYEERKGTYETTAAGLESNMSKLDQEVKALREEVLAEESRYHYMESMIEVLEVQQQRIDEEIKSYVNTDS--SKKSLRDKYSQRIHEQEVLGKQLREKQKYLRENHAPNMRQMKM 2036
MS+Q+K+I+D LN P+ KN NLI+FDSL+P+QLLQ+L+DV+ I+P+Q D+R+E PE RML L ++KYKP + ++S FRQG+V G KPVIYP+L WLL++ ELK+RAYLARFL+KL++P E L D V++ ++ Y L+E FK +HKE EQ+K SG S AEI+KDI +MEEE++QL KR++ +KKRV+ N +L A+QLR E+ERE LA Q+ QK L HA Q++ R+Q Q++ + ++ P+ L+KRLEEE + N+Y+ TEK PKELENKK+ + LQ+V EPAMG ++L L I E+++E+N+L+EK+MMRN+PI+ KLS++RQQA++I+ KK++ AE+LQEA ++ + E E ++++ ++ D ++LKGDEFKRYVNKLR S ++KKK Q I++L+AE G+L R+EE+LK R +N Q L +E K G+SG+ QEELE+VS +K E+DE KG+TL++MS++V +L + +SEKK++LA VIKELR LRQ+ QEL+ E +E+K Y++ AAGLESN SKL+QEV+ LREE L EESRYHY MI+ LEVQ +R +E+K+Y+++D +K++R++Y++ EQE LGK+LREKQK +RE+H PNM+Q KM
Sbjct: 1 MSDQIKFIMDSLNKEPFRKNYNLITFDSLEPMQLLQVLSDVLAEIDPKQLVDIREEMPEQTAKRMLSLLGILKYKPSGNATDMSTFRQGLVIGSKPVIYPVLHWLLQRTNELKKRAYLARFLIKLEVPSEFLQDETVADTNKQYEELMEAFKTLHKEYEQLKISGFSTAEIRKDISAMEEEKDQLIKRVEHLKKRVETAQNHQWMLKIARQLRVEKEREEYLAQQKQEQKNQLFHAVQRLQRVQNQLKSMRQAAADAKPESLMKRLEEEIKFNLYMVTEKFPKELENKKKELHFLQKVVSEPAMGHSDLLELESKINEINTEINQLIEKKMMRNEPIEGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQIIAELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISGYSYTQEELERVSALKSEVDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQEESRYHYTNCMIKNLEVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRESHGPNMKQAKM 638 The following BLAST results are available for this feature:
BLAST of TCONS_00036366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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