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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036197 ID=TCONS_00036197|Name=TCONS_00036197|organism=Clytia hemisphaerica|type=transcript|length=987bp
aacgaattaagtcaacgacgaataattatgcaaattatgtgagtttacgt
tatccctcgccgcgaaatttgaattgtcgttgttgtcgttgttgataagc
taccgagtttactgtccctaagctagttattcagtcacaacttaaccatc
agatttatccaagtgactgaatcaaactagcttagatttctaggctaNGA
CTTGTTAAAATTAAAACCACAGGACCCTTAAATGGAAGTAAACTTCACTC
TATAACTAAAGGTAAAAATGAACCGATATACATTAGATCAAAAACCGACT
TTAGACACTTGCTTACTACAAAAGATAAGCTCTGGCCTTCAGAGATTAGT
AGTTCAAGTGAAAGTGATGAATATGAAGATCCTGTACGCAGAAAGCAGAA
GCTGGAATCATGTGAATGTCCAATTTGTCAGAAAGTTTTCCCATTAGACA
CTATCAGTGCCAATGCAAGTAGTTGTGGTGAGGTCTTCGTAGCAAAATCT
GCCACCAAAGGCATGCATACATCAACTGCTACAAGACCCCAAACATCAAC
TGCTACAAGACCCCAAACACCGATTGAAACAAAACCTCCAACATTGACTG
AAACAAGACCTTCTGCATCGACTGGATCTGGATCACTCCGTACTCCACCA
GCTGCTATTGTCCCTAAGACTTTAACCTTTGAAAAACCCAATTCGTACGA
CATCAAAGATATACCTGTGGCGGAGGTGCAAGAGAAATTGGTTGGGATTA
AGAACTGTCAGACTAAGGAGGAGCTTGACGACTGTTTTGCTTCATTTGAT
GAAAGATTTGAAGCTGGCTACAACAAAATGGTCCTCAATATGGATGAGCG
AGAGCATTTTTGTCGATTAATATCTCgtttttttattgttgaaaGAAATC
ACGCTGAGATTTCGCAGCTGTTGAAAGGAGTTCACCCTGACCTCCTCTCA
CTAATGAGAAGATTCCCTGAAGAAGGAATCAAAGAAA Run BLAST on NCBI protein sequence of TCONS_00036197-protein >TCONS_00036197-protein ID=TCONS_00036197-protein|Name=TCONS_00036197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MHTSTATRPQTSTATRPQTPIETKPPTLTETRPSASTGSGSLRTPPAAIV
PKTLTFEKPNSYDIKDIPVAEVQEKLVGIKNCQTKEELDDCFASFDERFE
AGYNKMVLNMDEREHFCRLISRFFIVERNHAEISQLLKGVHPDLLSLMRR
FPEEGIKE Run BLAST on NCBI transcript from alignment at sc0001424:30273..32024+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036197 ID=TCONS_00036197|Name=TCONS_00036197|organism=Clytia hemisphaerica|type=transcript|length=1752bp|location=Sequence derived from alignment at sc0001424:30273..32024+ (Clytia hemisphaerica)
aacgaattaagtcaacgacgaataattatgcaaattatgtgagtttacgt
tatccctcgccgcgaaatttgaattgtcgttgttgtcgttgttgataagc
taccgagtttactgtccctaagctagttattcagtcacaacttaaccatc
agatttatccaagtgactgaatcaaactagcttagatttctaggctaNGA
CTTGTTAAAATTAAAACCACAGGACCCTTAAATGGAAGTAAACTTCACTC
TATAACTAAAGGTAAAAATGAACCGATATACATTAGATCAAAAACCGACT
TTAGACACTTGCTTACTACAAAAGATAAGCTCTGGCCTTCAGAGATTAGT
AGTTCAAGTGAAAGTGATGAATATGAAGATCCTGTACGCAGAAAGCAGAA
GCTGGAATCATGTGAATGTCCAATTTGTCAGAAAGTTTTCCCATTAGACA
CTATCAGTGCCAATGCAAGTAGTTGTGGTGAGGTCTTCGTAGCAAAATCT
GCCACCAAAGGCATGCATACATCAACTGCTACAAGACCCCAAACATCAAC
TGCTACAAGACCCCAAACACCGATTGAAACAAAACCTCCAACATTGACTG
AAACAAGACCTTCTGCATCGACTGGATCTGGATCACTCCGTACTCCACCA
GCTGCTATTGTCCCTAAGACTTTAACCTTTGAAAGTGAGCTGAAAAAACt
gcaaacaatttttcaatgtaGAACGGAGAAAAATCTCAACTTGAGACTTA
AGAATGTGTATGAAGATATGGCCAAAAAGTTTAGACtattattcaaaaca
aaactttcacCCGTCACAGTCACCTTTTTCGAGGAGGTAGGAGTCGACGA
TGGTGGGTTGACACGGGAAGCCTTCTCCAAAATTTTTGCTACAGCTAATC
GTGAGGTTCTCTGTTGAATGGAAAATCGATTCACATTAATTCACGACAAG
ATAAAACTGGAGGCAGgagattttttcatatttggcCAGATACTCAGCAT
GGCTTTGCTGATGGGTGCTTCTGGCCCACATGATCTTTCTAAACCATTCG
CAGAACACCTCCTTTCTTTTAAAGAACCCAATTCGTACGACATCAAAGAT
ATACCTGTGGCGGAGGTGCAAGAGAAATTGGTTGGGATTAAGAACTGTCA
GACTAAGGAGGAGCTTGACGACTGTTTTGCTTCATTTGATGAAAGATTTG
AAGCTGGGTAAGTTAACTATTACTACAGTGCCTCACCTAAAAACTTCTAG
AACTTTTCTCTTCTCACTGGTCAATGGGCAACTAAATTTACTCTTCAGGC
TCATTTTCAGTGAGGATCTTTAAACAAACAGAGGGGCTACTTTCCACCCC
ACCTTACCATAGCTAGATGGTGGGGGAaacgattttccaaaaaagtcgAA
AGGGTGGGTGTACAGATATTTCTTGTTCGTTTTTCGTTTGCTCATTCGTT
CCTTTTTCAGAATCTTTTCCATTAATGTCTATGTTTTCTCTCATTTggct
aactttcatcatcaggtaggtccaatcagcatgttgcttgttgttATTAA
TaatggatttttaaatttttctcttgTTTCAGCTACAACAAAATGGTCCT
CAATATGGATGAGCGAGAGCATTTTTGTCGATTAATATCTCgttttttta
ttgttgaaaGAAATCACGCTGAGATTTCGCAGCTGTTGAAAGGAGTTCAC
CCTGACCTCCTCTCACTAATGAGAAGATTCCCTGAAGAAGGAATCAAAGA
AA Coding sequence (CDS) from alignment at sc0001424:30273..32024+ >TCONS_00036197 ID=TCONS_00036197|Name=TCONS_00036197|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0001424:30273..32024+ (Clytia hemisphaerica)
ATGCATACATCAACTGCTACAAGACCCCAAACATCAACTGCTACAAGACC
CCAAACACCGATTGAAACAAAACCTCCAACATTGACTGAAACAAGACCTT
CTGCATCGACTGGATCTGGATCACTCCGTACTCCACCAGCTGCTATTGTC
CCTAAGACTTTAACCTTTGAAAAACCCAATTCGTACGACATCAAAGATAT
ACCTGTGGCGGAGGTGCAAGAGAAATTGGTTGGGATTAAGAACTGTCAGA
CTAAGGAGGAGCTTGACGACTGTTTTGCTTCATTTGATGAAAGATTTGAA
GCTGGCTACAACAAAATGGTCCTCAATATGGATGAGCGAGAGCATTTTTG
TCGATTAATATCTCgtttttttattgttgaaaGAAATCACGCTGAGATTT
CGCAGCTGTTGAAAGGAGTTCACCCTGACCTCCTCTCACTAATGAGAAGA
TTCCCTGAAGAAGGAATCAAAGAAATGCATACATCAACTGCTACAAGACC
CCAAACATCAACTGCTACAAGACCCCAAACACCGATTGAAACAAAACCTC
CAACATTGACTGAAACAAGACCTTCTGCATCGACTGGATCTGGATCACTC
CGTACTCCACCAGCTGCTATTGTCCCTAAGACTTTAACCTTTGAAAAACC
CAATTCGTACGACATCAAAGATATACCTGTGGCGGAGGTGCAAGAGAAAT
TGGTTGGGATTAAGAACTGTCAGACTAAGGAGGAGCTTGACGACTGTTTT
GCTTCATTTGATGAAAGATTTGAAGCTGGCTACAACAAAATGGTCCTCAA
TATGGATGAGCGAGAGCATTTTTGTCGATTAATATCTCgtttttttattg
ttgaaaGAAATCACGCTGAGATTTCGCAGCTGTTGAAAGGAGTTCACCCT
GACCTCCTCTCACTAATGAGAAGATTCCCTGAAGAAGGAATCAAAGAAAT
GCATACATCAACTGCTACAAGACCCCAAACATCAACTGCTACAAGACCCC
AAACACCGATTGAAACAAAACCTCCAACATTGACTGAAACAAGACCTTCT
GCATCGACTGGATCTGGATCACTCCGTACTCCACCAGCTGCTATTGTCCC
TAAGACTTTAACCTTTGAAAAACCCAATTCGTACGACATCAAAGATATAC
CTGTGGCGGAGGTGCAAGAGAAATTGGTTGGGATTAAGAACTGTCAGACT
AAGGAGGAGCTTGACGACTGTTTTGCTTCATTTGATGAAAGATTTGAAGC
TGGCTACAACAAAATGGTCCTCAATATGGATGAGCGAGAGCATTTTTGTC
GATTAATATCTCgtttttttattgttgaaaGAAATCACGCTGAGATTTCG
CAGCTGTTGAAAGGAGTTCACCCTGACCTCCTCTCACTAATGAGAAGATT
CCCTGAAGAAGGAATCAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036197-exon-sc0001424-1491911889:30273..30956 | TCONS_00036197-exon-sc0001424-1491911889:30273..30956 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1510915933:30273..30956 | TCONS_00036197-exon-sc0001424-1510915933:30273..30956 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1575043694:30273..30956 | TCONS_00036197-exon-sc0001424-1575043694:30273..30956 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1491911889:31347..31479 | TCONS_00036197-exon-sc0001424-1491911889:31347..31479 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1510915933:31347..31479 | TCONS_00036197-exon-sc0001424-1510915933:31347..31479 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1575043694:31347..31479 | TCONS_00036197-exon-sc0001424-1575043694:31347..31479 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1491911889:31855..32024 | TCONS_00036197-exon-sc0001424-1491911889:31855..32024 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1510915933:31855..32024 | TCONS_00036197-exon-sc0001424-1510915933:31855..32024 | Clytia hemisphaerica | exon |
| TCONS_00036197-exon-sc0001424-1575043694:31855..32024 | TCONS_00036197-exon-sc0001424-1575043694:31855..32024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001424 | supercontig | sc0001424:30273..32024 + |
Blast
The following BLAST results are available for this feature:
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