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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035921 ID=TCONS_00035921|Name=TCONS_00035921|organism=Clytia hemisphaerica|type=transcript|length=1939bpRun BLAST on NCBI protein sequence of TCONS_00035921-protein >TCONS_00035921-protein ID=TCONS_00035921-protein|Name=TCONS_00035921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp MVRPPPGYSLVGADVDCQELWIASVLGDAQFAQIHGCTASSWMTLQGKKSRun BLAST on NCBI transcript from alignment at sc0001387:28310..52871- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035921 ID=TCONS_00035921|Name=TCONS_00035921|organism=Clytia hemisphaerica|type=transcript|length=24562bp|location=Sequence derived from alignment at sc0001387:28310..52871- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001387:28310..52871- >TCONS_00035921 ID=TCONS_00035921|Name=TCONS_00035921|organism=Clytia hemisphaerica|type=CDS|length=7248bp|location=Sequence derived from alignment at sc0001387:28310..52871- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035921 vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1) HSP 1 Score: 451.44 bits (1160), Expect = 3.988e-143 Identity = 216/338 (63.91%), Postives = 264/338 (78.11%), Query Frame = 2
Query: 158 GVILPQIITAGTVTRRAVEPTWLTASNPLRDRIGSELKSMVRPPPGYSLVGADVDCQELWIASVLGDAQFAQIHGCTASSWMTLQGKKSEQTDLHSKTADTIGMSRDQAKIFNYGRVYGAGESFAVRLLMQFNHNLTQREAENTAAKLYESTKGIKRYRLNGRGKTLAEELEIMLDFND--LVSYVSLKRLLQEHGLSWSKRAQLVDPQHVWFDESESDMFNKLESIALSEQPRTPVLNCLITKALFPKHVENHYKTSRVNWVVQSSAVDYLHLMLTSMAWLIKEYNIDARFCVSIHDEVRYIVKDKDRYRLALALQITNLLTRSMFAYKLNLNDLPQ 1165
G ILPQ++TAGT+TRRAVEPTWLTASN DR+GSELK+MV+ PPGY+LVGADVD QELWIA+VLGDA FA +HGCTA WMTLQG+KS TDLHSKTA T+G+SR+ AKIFNYGR+YGAG+ FA RLLMQFNH LTQ+EA A ++Y +TKG++ YRL+ G+ L EL + +D + +S L+++ +E + V + W +ES+MFNKLESIA S+ PRTPVL C I++AL P V+ + TSRVNWVVQSSAVDYLHLML +M WL +E+ ID RFC+SIHDEVRY+V+++DRYR ALALQITNLLTR MFAYKL LNDLPQ
Sbjct: 838 GAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQ 1175 The following BLAST results are available for this feature:
BLAST of TCONS_00035921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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