TCONS_00035921-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00035921-protein
Unique NameTCONS_00035921-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00035921-protein ID=TCONS_00035921-protein|Name=TCONS_00035921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MVRPPPGYSLVGADVDCQELWIASVLGDAQFAQIHGCTASSWMTLQGKKS
EQTDLHSKTADTIGMSRDQAKIFNYGRVYGAGESFAVRLLMQFNHNLTQR
EAENTAAKLYESTKGIKRYRLNGRGKTLAEELEIMLDFNDLVSYVSLKRL
LQEHGLSWSKRAQLVDPQHVWFDESESDMFNKLESIALSEQPRTPVLNCL
ITKALFPKHVENHYKTSRVNWVVQSSAVDYLHLMLTSMAWLIKEYNIDAR
FCVSIHDEVRYIVKDKDRYRLALALQITNLLTRSMFAYKLNLNDLPQFSR
H
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021089XLOC_021089Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00035921TCONS_00035921Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002297DNA-dir_DNA_pol_A_mt
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR019760DNA-dir_DNA_pol_A_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005760gamma DNA polymerase complex
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
cellular_component GO:0005760 gamma DNA polymerase complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002297DNA-directed DNA-polymerase, family A, mitochondriaPRINTSPR00867DNAPOLGcoord: 74..82
score: 87.3
coord: 270..285
score: 73.21
coord: 286..301
score: 40.34
coord: 217..233
score: 88.24
coord: 171..184
score: 61.22
IPR001098DNA-directed DNA polymerase, family A, palm domainSMARTSM00482polaultra3coord: 1..267
e-value: 2.2E-69
score: 246.5
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 1..290
e-value: 3.2E-47
score: 161.3
NoneNo IPR availableGENE3D1.10.150.20coord: 20..227
e-value: 2.1E-22
score: 79.5
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 1..120
coord: 159..289
IPR019760DNA-directed DNA polymerase, family A, conserved sitePROSITEPS00447DNA_POLYMERASE_Acoord: 67..86

Blast
[Close]
BLAST of TCONS_00035921-protein vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 5.130e-126
Identity = 186/299 (62.21%), Postives = 229/299 (76.59%), Query Frame = 0 
Query:    1 MVRPPPGYSLVGADVDCQELWIASVLGDAQFAQIHGCTASSWMTLQGKKSEQTDLHSKTADTIGMSRDQAKIFNYGRVYGAGESFAVRLLMQFNHNLTQREAENTAAKLYESTKGIKRYRLNGRGKTLAEELEIMLDFND--LVSYVSLKRLLQEHGLSWSKRAQLVDPQHVWFDESESDMFNKLESIALSEQPRTPVLNCLITKALFPKHVENHYKTSRVNWVVQSSAVDYLHLMLTSMAWLIKEYNIDARFCVSIHDEVRYIVKDKDRYRLALALQITNLLTRSMFAYKLNLNDLPQ 297
            MV+ PPGY+LVGADVD QELWIA+VLGDA FA +HGCTA  WMTLQG+KS  TDLHSKTA T+G+SR+ AKIFNYGR+YGAG+ FA RLLMQFNH LTQ+EA   A ++Y +TKG++ YRL+  G+ L  EL + +D  +   +S   L+++ +E       +   V  +  W   +ES+MFNKLESIA S+ PRTPVL C I++AL P  V+  + TSRVNWVVQSSAVDYLHLML +M WL +E+ ID RFC+SIHDEVRY+V+++DRYR ALALQITNLLTR MFAYKL LNDLPQ
Sbjct:  877 MVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTEGGWISLQDLRKVQRETARKSQWKKWEVVAERAWKGGTESEMFNKLESIATSDIPRTPVLGCCISRALEPSAVQEEFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQ 1175
The following BLAST results are available for this feature:
BLAST of TCONS_00035921-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOG15.130e-12662.21DNA polymerase subunit gamma-1 OS=Homo sapiens GN=... [more]
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