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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035885 ID=TCONS_00035885|Name=TCONS_00035885|organism=Clytia hemisphaerica|type=transcript|length=2061bp
CAGGTTTCAAAGTCTGGAAAGAAGCTTCGTGGTCGTGGAATTATGAGATA
TCGAACTCCAACGCCAGAAAGGGAAGAAGAACCAGAAAAAGAAGAAGGTC
GGAGATTCCATAACAGCGTAAACCGTTCGCGTCGCTCTCGTTCAAGGGAC
CGAACAAGACGTCGCTCACCGCGCGGTGCAAGATATTCAAGATCTCCCat
aagaagaagaaaatattcaatttcacCTATTCGTAAACCCTCAACCTCCA
CTGTGAAAACGACAGATAAAGCTGAACCTTGCGAGGGAAAAGTTGTAAAA
GTCATGAAGGAAAAGAAGGACGACAAAACTGATGTGCCCAAAGAAGACGG
ACAACCTGTAAAATCTCAAGATGAGAAAGTATCACCTTCCGCTAAAATAA
AGTCTTCTCGTAGCAAGTCGCGCGATCGAAGTAGGCGATCTCATTCCCGC
GAAAGAAAAAGATCACGATCGCGTGATCGTAGAAGAAGATCACGGTCAAG
GTCGAGAGGGCGTTATCGAAGATCTGGGTCACGCTCTCGCTGTCACAGGA
GAAGATCGCGGTCGCGAGACAGGTACCGTCGTAGTCGAAGTCGATCGAAG
CGTCGCTCACCAAGGCGCTCATCACGAGACCGTGCAGGAAAATTCGAACG
CCATCGAGATAAGAGTAGTTCAGACGAATCGATCGAAAGGAAAACGAACG
AATCGAAAGTGGCCGACCAAAAGCCATCTTACAAAGAGAGGATCAACATG
ctattggaaaagaaaaatgcagAAGCACGTTTGGCCGAAGAACAAGGCAC
TATTGCTTCAAAAGAACAAGAAGCATCTGAGTCCAATCGTGTTGCTTACT
CACCACGTGAAAACGAGGCAGATGAAAACTTTGCAACAGGGATATTAGGC
CAACCAGAACTGTACGACGATCTGATACCGAAAGACAGCTGTGCCAATGT
CAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAGATTTTTATGCAGAGTTGG
ACAAGCCCTTCGTCGATGGTCAACANACAGCTGTGCCAATGTCAAAGAAA
GTGTTCAAGAGGAAGAGGAAGTAGATTTTTATGCAGAGTTGGACAAGCCC
TTCGTCGATGGTCAACAGAACAAACCATCGGAAAAAGAAAGATCACTTCT
AGTGGTGGAAGAAGAGAAATCCGCCTATGCAGAGGCGGCTGCTGAAGAGG
CGGCTGAACAACGTATCAAACTTCTGCAACAAGAAATTGATGACCACAAA
CGCGCCAAGTTGGACACCGCTCACATCCATTCTGAAAACACATCTAGAAA
AATTCGGAAGAAAAAGTCCAGTAGAGTGGATAATGAGATGGATAGCGAAG
ACGAGGCTGCTCATAACAGGAAAGCCTCtaggaagaagaaaaataagagA
CGCAAACGCCAGCTTTCCGAACAGTTAGTACTGAGTGATGAAATGAGTGG
TTCCGAGGATGGGTCGCAATCGGTTGATAGTTTGACAGAAGCCGACCGAG
ATGGAAAGTCtcataaaaagaagaaatttctgACTGCAACAAATGGCCgt
aagaaaaagaaatcacGCAAAGACCGACCACTCTCTGACAGTGATGATGC
TGGTGCCCACAGTGAACAAGATGAGCTGCCTTTGCCGCCGAGCAAAAACC
GTAAGAAACATCGCAAGGAAGCTCATTCCGATCAATGCCATAGCGAAAGT
CAGTCGGACGAAGCTcctgtcaaaaagaaaaaatcgaaaagcaaaaagcg
cgggaaaatatGAATCTCTAAACAAAGGTCGGTGTAAATATTGGAGTCTT
CTTCCTTCCATAGAAGAAAGTTACGTACCATTTTTCATTCAACAGGGAGC
TTTCCAAGTGTTGGACTTTTTCACCGTAATATTTTGTTGATAATAAAGCA
ACATTTCTTAtctagaatttttttaatttttaaaacatttttttgaaaca
agTTTTAGGTTTTATATTGTGCTCTCTTGTGCTCTTTGTGTGCCTTTTGA
TTTCGATAACGATTTCGAGATCTTTTTTTCGCTTTAGATCTGTTTAGATC
TCTAATATTAC Run BLAST on NCBI transcript from alignment at sc0001385:52126..54350+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035885 ID=TCONS_00035885|Name=TCONS_00035885|organism=Clytia hemisphaerica|type=transcript|length=2225bp|location=Sequence derived from alignment at sc0001385:52126..54350+ (Clytia hemisphaerica)
CAGGTTTCAAAGTCTGGAAAGAAGCTTCGTGGTCGTGGAATTATGGTAAC
ATATCTTCCCTTTGTCTTTCGACAAAGTCTGCTCATCCTAAAAAGCTAAT
TCTAATttagtaaaacttttttttaccaattttgaCAAAGCATATGTATT
CAAAGATCACTGGAAATCATTAGGTAAGTCTAAACGATCTTCAAACATTC
TATTCTTAGAGATATCGAACTCCAACGCCAGAAAGGGAAGAAGAACCAGA
AAAAGAAGAAGGTCGGAGATTCCATAACAGCGTAAACCGTTCGCGTCGCT
CTCGTTCAAGGGACCGAACAAGACGTCGCTCACCGCGCGGTGCAAGATAT
TCAAGATCTCCCataagaagaagaaaatattcaatttcacCTATTCGTAA
ACCCTCAACCTCCACTGTGAAAACGACAGATAAAGCTGAACCTTGCGAGG
GAAAAGTTGTAAAAGTCATGAAGGAAAAGAAGGACGACAAAACTGATGTG
CCCAAAGAAGACGGACAACCTGTAAAATCTCAAGATGAGAAAGTATCACC
TTCCGCTAAAATAAAGTCTTCTCGTAGCAAGTCGCGCGATCGAAGTAGGC
GATCTCATTCCCGCGAAAGAAAAAGATCACGATCGCGTGATCGTAGAAGA
AGATCACGGTCAAGGTCGAGAGGGCGTTATCGAAGATCTGGGTCACGCTC
TCGCTGTCACAGGAGAAGATCGCGGTCGCGAGACAGGTACCGTCGTAGTC
GAAGTCGATCGAAGCGTCGCTCACCAAGGCGCTCATCACGAGACCGTGCA
GGAAAATTCGAACGCCATCGAGATAAGAGTAGTTCAGACGAATCGATCGA
AAGGAAAACGAACGAATCGAAAGTGGCCGACCAAAAGCCATCTTACAAAG
AGAGGATCAACATGctattggaaaagaaaaatgcagAAGCACGTTTGGCC
GAAGAACAAGGCACTATTGCTTCAAAAGAACAAGAAGCATCTGAGTCCAA
TCGTGTTGCTTACTCACCACGTGAAAACGAGGCAGATGAAAACTTTGCAA
CAGGGATATTAGGCCAACCAGAACTGTACGACGATCTGATACCGAAAGAC
AGCTGTGCCAATGTCAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAGATTT
TTATGCAGAGTTGGACAAGCCCTTCGTCGATGGTCAACANACAGCTGTGC
CAATGTCAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAGATTTTTATGCAG
AGTTGGACAAGCCCTTCGTCGATGGTCAACAGAACAAACCATCGGAAAAA
GAAAGATCACTTCTAGTGGTGGAAGAAGAGAAATCCGCCTATGCAGAGGC
GGCTGCTGAAGAGGCGGCTGAACAACGTATCAAACTTCTGCAACAAGAAA
TTGATGACCACAAACGCGCCAAGTTGGACACCGCTCACATCCATTCTGAA
AACACATCTAGAAAAATTCGGAAGAAAAAGTCCAGTAGAGTGGATAATGA
GATGGATAGCGAAGACGAGGCTGCTCATAACAGGAAAGCCTCtaggaaga
agaaaaataagagACGCAAACGCCAGCTTTCCGAACAGTTAGTACTGAGT
GATGAAATGAGTGGTTCCGAGGATGGGTCGCAATCGGTTGATAGTTTGAC
AGAAGCCGACCGAGATGGAAAGTCtcataaaaagaagaaatttctgACTG
CAACAAATGGCCgtaagaaaaagaaatcacGCAAAGACCGACCACTCTCT
GACAGTGATGATGCTGGTGCCCACAGTGAACAAGATGAGCTGCCTTTGCC
GCCGAGCAAAAACCGTAAGAAACATCGCAAGGAAGCTCATTCCGATCAAT
GCCATAGCGAAAGTCAGTCGGACGAAGCTcctgtcaaaaagaaaaaatcg
aaaagcaaaaagcgcgggaaaatatGAATCTCTAAACAAAGGTCGGTGTA
AATATTGGAGTCTTCTTCCTTCCATAGAAGAAAGTTACGTACCATTTTTC
ATTCAACAGGGAGCTTTCCAAGTGTTGGACTTTTTCACCGTAATATTTTG
TTGATAATAAAGCAACATTTCTTAtctagaatttttttaatttttaaaac
atttttttgaaacaagTTTTAGGTTTTATATTGTGCTCTCTTGTGCTCTT
TGTGTGCCTTTTGATTTCGATAACGATTTCGAGATCTTTTTTTCGCTTTA
GATCTGTTTAGATCTCTAATATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035885-exon-sc0001385-1491911889:52126..52170 | TCONS_00035885-exon-sc0001385-1491911889:52126..52170 | Clytia hemisphaerica | exon |
| TCONS_00035885-exon-sc0001385-1510915933:52126..52170 | TCONS_00035885-exon-sc0001385-1510915933:52126..52170 | Clytia hemisphaerica | exon |
| TCONS_00035885-exon-sc0001385-1575043694:52126..52170 | TCONS_00035885-exon-sc0001385-1575043694:52126..52170 | Clytia hemisphaerica | exon |
| TCONS_00035885-exon-sc0001385-1491911889:52335..54350 | TCONS_00035885-exon-sc0001385-1491911889:52335..54350 | Clytia hemisphaerica | exon |
| TCONS_00035885-exon-sc0001385-1510915933:52335..54350 | TCONS_00035885-exon-sc0001385-1510915933:52335..54350 | Clytia hemisphaerica | exon |
| TCONS_00035885-exon-sc0001385-1575043694:52335..54350 | TCONS_00035885-exon-sc0001385-1575043694:52335..54350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001385 | supercontig | sc0001385:52126..54350 + |
Blast
The following BLAST results are available for this feature:
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