TCONS_00035697 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035697
Unique Name	TCONS_00035697
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3384

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001353:2987..10445+
coding sequence from alignment at sc0001353:2987..10445+

transcript sequence

>TCONS_00035697 ID=TCONS_00035697|Name=TCONS_00035697|organism=Clytia hemisphaerica|type=transcript|length=3384bp
CGGATAAATTCGATTTGGTCTCGATTGTTCAAAAAACTTTCCAAGCAACC
CCAAACAAATCAACATGGCTTCCCGTTTTTGTTCGATTTTGGGACTTCTT
GTCAACATTGTATGATATTTCTTTAATCCATCTTATAATATTTAATAGAA
GAGatatattgaacaaaaaaaaaatgttgggAAGTGAAGGAGAAGAGGTA
GAGGAGCAATATTTGTTGAATCTGCAAGAATTTGTGGAAGTTGTTCAACC
TCAAATGAAAGAGCTGGAAGCCCTCACTCAAGTGGAAGAGTTTGTATCCA
GTCTGGAATCAACTGATCCGAACTTCCATCGCTATGGTTTCATTTCTCAA
ATGAAAGATTCTTTGGACACAGAACTGACACCTTTGATTGATCAAATGTT
ACTGGATGGAAAAGAAGCTGACAATGAAGACCATTTAAAAGCAAATAGAA
GTTCAGAACTGATGAAAACTGAAGAATTCCAAAACATTTCATCACATATT
CTGAAATCAGTACAAGCAGCTGCTTCTAAGATTACAGATCATTTAAATTC
TGACACTTTTGACTTTTCGGGTCCGTTTCATAAATTCAAGTCAAgtaatg
attattttaatgCCAGTCAATCTGACTGTTCCACTGCGGATGGAATGGAG
TTCATGTTTATGTCACCAGACCGTTACAAAACATTGGCCCAAGATATTTC
TCCATCAAGACCCATTGAACAACGTCTGAAAGCTCTTTCAATTTTGCAGC
ATCTACCTCAAGGTGATTTGGTTGCGAGTGAAGCATGGCAGCTGACCAAA
GAAGGGATCCACAAAGCACTAAATGATTATGATGAGGAGATCAATCAAAA
AGCGCTGAAACttttatccaaaatatttgTGAGTGGTAACAGTCATGTCA
TTAGAGAATACTTTTTATTGTTGGTCGAAAATTTGTCAGACTATTTCAAT
GATAGTACGTCACATATGGTTTCACTTAATGGTGGACTGGACCTTGGTGA
TCGTAGAAATGTTTTACTTCTAAAAAAATTCCGCCTCCTTAATGAGATTC
AGAAGGAACTACCTAAAACATGGCTACGCTATTCAGAGCGGTATATTGAG
GAGATGATTGAAGCAATGGTCCACTTACTAGGGATCTCTCCATCCAGAAT
GGGAGGAGGGAACGAGTGCACTTTATTGAATCCTTATCATTTCCTGTGCA
TGGTTGATCCACATGGTGTTTGGTTTAAAAAATGGATCCATGGTTTTTAC
AGTCGTTCGCACCTTCTAAACTCGATTCATAACCATATGTCTTTCTTGAA
AAGATCGATAAAGAGTTGCATTGAAGTTTGCCGCAAACTGCACCATAATA
ACGAACAGGTCACACCAAATGATGAATCTTCAGATTCTATGATTTTTGAT
CagttttatattttgtacattcaATTTATACATTCAGTCAATATTCTTGT
NTCACACCAAATGATGAATCTTCAGATTCTATGATTTTTGATCagtttta
tattttgtacattcaATTTATACATTCAGTCAATATTCTTGTACGGCTAA
TGCAGTTCAAGAAAGGCCGAAGTTTACTTCACTTTGAGCTAAACAATGGG
AAGTTTTTGGACATTGGTATGCTATTTGTTGCACTTGTCGATGTTGTTAA
ATTACACCCAAGCAAACATCTCAAATCACAATACCATGGTGGACAGCTGA
TACTGGATGGCTTCAAAACATTATGTAACATCGATAATGAGACGATTAAG
GATTGTTTTTGCTGGGGAAGCATCTACCAATCCATCATACATGGCTTCGA
ACAGAACGTTCAATCGATTCCTCAACTCTTGGAAATACTGTCTGAACTCG
CTGGTAATGCACTTGGTTGTGAACAACTGCTCATACCACGGACAAGCAGC
AAGTATGAAAAGAAGCTTTCCTTGATTGAGTTTCTTGCGGAAATTTATAT
TCAAAATGGAGGGAGAGATCTTGAAACATCTCTTGTTCCAACCTTCATGA
AATTATTGAGACAGTTGTTTAAAAATTCTGATTGTGTGGTTTTGCTTTCA
AAATACAATTTGAAGCAATTTTTTTATCAGCTTTATATCAAACAACAAGG
TGAATCAGCAGAATTATTGGAAAAATACAACAAACTAGTTAGCAATAGAG
CACCAACATCCAGCACTGGATCAGGGTCAGCAAGGAGAAGTGCTGAGAGT
CAAGCCTATAAAAAATCTCTCCAAACAGAGCAACAAATCTTCGAAACTAT
TCTTTGTCTGAACCTCACATCCAAAGgtgttattttattttttcactctG
ACATTATCGATGCTTGTGTGTCCTATTTTGGGAAATGTTTGCAAGAAAAC
AACCGAACAGCTAACAATCGGTATGGCTACATTATGGCTAAAGTGGCTTC
CAATACTAAAGGATGTCAAGCTCTCGTCAAGGCGGGTTACGATGAGCATA
TTTTGAGCGACATTTGGTTCCACTTGGAAGGGTGCACAAACGATTACACT
TTAACTGTTCTCGATAACGAGCCCGAAGATTTATCAGACCGCTTATCCAA
AGAACTTTTCTACAAGTTGTGTGAAATTCTACCCAACTTTCAATCAGCTC
AAGTCATGTTAGAAGACTCAAAGAAACTTCAGAAACANCCAAAGAACTTT
TCTACAAGTTGTGTGAAATTCTACCCAACTTTCAATCAGCTCAAGTCATG
TTAGAAGACTCAAAGAAACTTCAGAAACAAGATGAACCTGTATGTCTAGA
TGAATTTATCAAGTATACAGTTCTATATCGATTCCCCTCCGGTACACGTC
TATTTCGCCCGGAGCAGACTCACTTTTTTGGATTATCTTTCATGAATTAC
GTAGTTGCTTCATTAGATGTCATGCTGTTTTTACAATCAAAATATGATTT
CAAAGATGTGTTTTTCAAAATGCAACAAGATTGTTATTCATCCGAACATA
ATGCTTACATTCTCGACCAGAATTGCATCAAACGAAATGAGATCTTGGTG
CAAACATCCATCCTCGGTGGTCCCGATGAACGGAAAATGCCTTCACCATC
TCTTTCAACCGAGAACACGTACAACTACCCACTTTTCTCATCACAACCTG
TTCCAGctgtttattttcaaaagcaAAAGCATTCTTCGCCTTCGAAACAA
CACAATAACAAGGCAGCTTTCACTCAATTATCGAACGTTTTGAAAGGTGG
TGGTGAGGAAGAGCTCAAGAAATGTTTTCTGGAAGCACTTCGTAGCCCCT
CCTTTAAGGTAAGTTGTTGAACTAAATTCATGCATGTTTCTTtgtaagca
taacgcttataagcatctgaaggctcagatttgcagattttctaagcata
acataagcatatatgtgAGCCTGAAATATTGAAG

Run BLAST on NCBI

protein sequence of TCONS_00035697-protein

>TCONS_00035697-protein ID=TCONS_00035697-protein|Name=TCONS_00035697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=493bp
DKFDLVSIVQKTFQATPNKSTWLPVFVRFWDFLSTLYDISLIHLIIFNRR
DILNKKKMLGSEGEEVEEQYLLNLQEFVEVVQPQMKELEALTQVEEFVSS
LESTDPNFHRYGFISQMKDSLDTELTPLIDQMLLDGKEADNEDHLKANRS
SELMKTEEFQNISSHILKSVQAAASKITDHLNSDTFDFSGPFHKFKSSND
YFNASQSDCSTADGMEFMFMSPDRYKTLAQDISPSRPIEQRLKALSILQH
LPQGDLVASEAWQLTKEGIHKALNDYDEEINQKALKLLSKIFVSGNSHVI
REYFLLLVENLSDYFNDSTSHMVSLNGGLDLGDRRNVLLLKKFRLLNEIQ
KELPKTWLRYSERYIEEMIEAMVHLLGISPSRMGGGNECTLLNPYHFLCM
VDPHGVWFKKWIHGFYSRSHLLNSIHNHMSFLKRSIKSCIEVCRKLHHNN
EQVTPNDESSDSMIFDQFYILYIQFIHSVNILXSHQMMNLQIL

Run BLAST on NCBI

transcript from alignment at sc0001353:2987..10445+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035697 ID=TCONS_00035697|Name=TCONS_00035697|organism=Clytia hemisphaerica|type=transcript|length=7459bp|location=Sequence derived from alignment at sc0001353:2987..10445+ (Clytia hemisphaerica)
CGGATAAATTCGATTTGGTCTCGATTGTTCAAAAAACTTTCCAAGCAACC
CCAAACAAATCAACATGGCTTCCCGTTTTTGTTCGATTTTGGGACTTCTT
GTCAACATTGTATGATATTTCTTTAATCCATCTTATAATATTTAATAGAA
GAGGTAGGTTTTTTAACCCTTCAAATGGGAGAGGGTTAGCTATATGGGGG
ATATATGTTGTACTTTTTCAATGTGAACATAAACAAAGAACCAGAGGGAA
ATTAGTGCGTCTTCTTCTTTTCAGGCCCTCTTTCAGAACTTTTATGTATG
GTacagaatagacctttttttaaagaggcagccatattgaataattatgt
actccagcataaaaacaatgatacagccatgcataattactgtatcatgc
atattttaaaaattatgcatgggctgtatcattgtttttatgctggagta
cataattattcaacatggctgcctctccAGTGTGAAATCCATGCAAAAGC
CACACCGAAGATATTTTGAGGATCAAGAAGGTTACACCCAATTAAGGGCA
TTCTCACGCCGAATATATTTGGCGTACTGTGTATGAATTCCAGactggct
gcctctttaaaaaaaggtctatctatCACCTATAGTACCATTGTCCAGTG
GAATGATTTACAACAGAATTTTCCTGCTTATccctattttttctttttct
tttttcttttttgtctatTTCATTTGTgtatcttttctattttttgataa
ttttaagtttagttttctactttttgttctcctccttcatttttatttgt
ctGTTTTAAGACTTTTACGTATTCAGTAGTTTAAGAAATTNTTCTACTTT
TTGTTCTCCtccttcatttttatttgtctGTTTTAAGACTTTTACGTGTT
CAGTAGTTTAAGAAATTCTTCCTAATTATACTACTATTCCTTGGAATTTC
AAAAAGGTGGCCCATCTCGAATAGCTTGCTAATATGAGGTCTCCATTCTA
GCATTGTTTAGTTTTATTATATCATTGAACATAaaactttgtatcatatt
tactactacaatcatgaaaaataaaatactactactactactactactgt
GATGAGATAGACCCTTTTTTAGTATGGTATTATGGGATTTGACGAAATAG
AGACAGGAAACTGGTACCGTGAAGTCggcgggtaacttgcatcagtgggg
AGGCTAACatgatgcatagccctcaaatgactgaccaattaaagcagcaa
aatttcaaaacaaatcaactacgcagctccgctcgcagctcacaagtgtt
acgcgtaagccaaatcgcgtattacgaacaacctctaaattgccgagtac
aggagaaaaaaaatcaaaattcaaaatggcggccaagaccaccctgataa
ctatcaaaaatcttcgtttttcaatcagctattgcagctcaataaatcaa
tgaaataatttgaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNttcaaaataaaacgatttccaaaccaacctaaagtcagtgtctgcc
aactaaaaatttctctgcggggtcactggcaaggagttacgacttcagac
ttcagattccaattcttgtataggctgcaaccacactgccaaatgatctg
tattacaaagacttcccaatgggtccataagttgagaaaatgagattatc
atctagcacgggggttttgtttttaaaaacaaacttcaaaataaaattgt
taccTAATGAACttcttacttaaaatatcacttacttacataatttattt
atgatataacacccctttcttaaataaatgggctcttaaagtcttttatg
tttgccgcatgaagggagaaaaatttaatttgacccccagttttttctct
cttttgcTAGCTagttcccgcgtgttagtgtagacacaactttaatccag
tggaaatgaagcgttttcattggtctaaaatcacggatggtcacgtgacc
agaattattatccagggaaatgccgtggcggcaatgttttgctttagtga
gattgaccattttgttgtttagatttgagcgatttctgtacaaaccaaaa
tatggcttcgttggaataccggttgaaacacttgtcagctctactctacc
atttttgttttgatttaactttgtattttaatgacaagaccggtcattca
tttgagggctatgcatgttagcctccactgatgcaagttacccgacttca
cggtataccgtcaactgctctaacttgggactgtCTCTTACTTTGTAAAA
TAATTCGGAGTAGAATCCGAAACATCCAAGTTTGCACTAGACAGGTAACC
catcctgtatttttataatctgatacaGGACAGGTACGAGCTGTGAagca
gatttctgcctcaaaaaacTTACAGTGGAAAATTCAaatcctcacttact
aaaataaaaaccaaattttggaacttgcgctttctctgagaaagtgtgac
cagtaaaatattaacaaaatttgattggcaatgttttcaaccgtcattag
gatctaggaaattcaaactctcagcccgaaccatgctatatattttgcca
tcagtatataaaataagaaatcatagcatggatctccagtctaagtttgc
acggaagcacttgaaaaaaacgtttttgcAAAAAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtttggggggggggggcaaagtCAGAGATCATGTAGGGCATCCAACCCT
TTTGCACATTGTGAAATTATGATTTAATGAATAGCTTTCAAGGTAAACTG
ACTTGTTTACTGAAATGCTTAGAGTTCACTTAAAACCTGCTTGTAAGcca
ttttcttgattttatagatatattgaacaaaaaaaaaatgttgggAAGTG
AAGGAGAAGAGGTAGAGGAGCAATATTTGTTGAATCTGCAAGAATTTGTG
GAAGTTGTTCAACCTCAAATGAAAGAGCTGGAAGCCCTCACTCAAGTGGA
AGAGTTTGTATCCAGTCTGGAATCAACTGATCCGAACTTCCATCGCTATG
GTTTCATTTCTCAAATGAAAGATTCTTTGGACACAGAACTGACACCTTTG
ATTGATCAAATGTTACTGGATGGAAAAGAAGCTGACAATGAAGACCATTT
AAAAGCAAATAGAAGTTCAGAACTGATGAAAACTGAAGAATTCCAAAACA
TTTCATCACATATTCTGAAATCAGTACAAGCAGCTGCTTCTAAGATTACA
GATCATTTAAATTCTGACACTTTTGACTTTTCGGGTCCGTTTCATAAATT
CAAGTCAAgtaatgattattttaatgCCAGTCAATCTGACTGTTCCACTG
CGGATGGAATGGAGTTCATGTTTATGTCACCAGACCGTTACAAAACATTG
GCCCAAGATATTTCTCCATCAAGACCCATTGAACAACGTCTGAAAGCTCT
TTCAATTTTGCAGCATCTACCTCAAGGTGATTTGGTTGCGAGTGAAGCAT
GGCAGCTGACCAAAGAAGGGATCCACAAAGCACTAAATGATTATGATGAG
GAGATCAATCAAAAAGCGCTGAAACttttatccaaaatatttgTGAGTGG
TAACAGTCATGTCATTAGAGAATACTTTTTATTGTTGGTCGAAAATTTGT
CAGACTATTTCAATGATAGTACGTCACATATGGTTTCACTTAATGGTGGA
CTGGACCTTGGTGATCGTAGAAATGTTTTACTTCTAAAAAAATTCCGCCT
CCTTAATGAGATTCAGAAGGAACTACCTAAAACATGGCTACGCTATTCAG
AGCGGTATATTGAGGAGATGATTGAAGCAATGGTCCACTTACTAGGGATC
TCTCCATCCAGAATGGGAGGAGGGAACGAGTGCACTTTATTGAATCCTTA
TCATTTCCTGTGCATGGTTGATCCACATGGTGTTTGGTTTAAAAAATGGA
TCCATGGTTTTTACAGTCGTTCGCACCTTCTAAACTCGATTCATAACCAT
ATGTCTTTCTTGAAAAGATCGATAAAGAGTTGCATTGAAGTTTGCCGCAA
ACTGCACCATAATAACGAACAGGTCACACCAAATGATGAATCTTCAGATT
CTATGATTTTTGATCagttttatattttgtacattcaATTTATACATTCA
GTCAATATTCTTGTNTCACACCAAATGATGAATCTTCAGATTCTATGATT
TTTGATCagttttatattttgtacattcaATTTATACATTCAGTCAATAT
TCTTGTACGGCTAATGCAGTTCAAGAAAGGCCGAAGTTTACTTCACTTTG
AGCTAAACAATGGGAAGTTTTTGGACATTGGTATGCTATTTGTTGCACTT
GTCGATGTTGTTAAATTACACCCAAGCAAACATCTCAAATCACAATACCA
TGGTGGACAGCTGATACTGGATGGCTTCAAAACATTATGTAACATCGATA
ATGAGACGATTAAGGATTGTTTTTGCTGGGGAAGCATCTACCAATCCATC
ATACATGGCTTCGAACAGAACGTTCAATCGATTCCTCAACTCTTGGAAAT
ACTGTCTGAACTCGCTGGTAATGCACTTGGTTGTGAACAACTGCTCATAC
CACGGACAAGCAGCAAGTATGAAAAGAAGCTTTCCTTGATTGAGTTTCTT
GCGGAAATTTATATTCAAAATGGAGGGAGAGATCTTGAAACATCTCTTGT
TCCAACCTTCATGAAATTATTGAGACAGTTGTTTAAAAATTCTGATTGTG
TGGTTTTGCTTTCAAAATACAATTTGAAGCAATTTTTTTATCAGCTTTAT
ATCAAACAACAAGGTGAATCAGCAGAATTATTGGAAAAATACAACAAACT
AGTTAGCAATAGAGCACCAACATCCAGCACTGGATCAGGGTCAGCAAGGA
GAAGTGCTGAGAGTCAAGCCTATAAAAAATCTCTCCAAACAGAGCAACAA
ATCTTCGAAACTATTCTTTGTCTGAACCTCACATCCAAAGgtgttatttt
attttttcactctGACATTATCGATGCTTGTGTGTCCTATTTTGGGAAAT
GTTTGCAAGAAAACAACCGAACAGCTAACAATCGGTATGGCTACATTATG
GCTAAAGTGGCTTCCAATACTAAAGGATGTCAAGCTCTCGTCAAGGCGGG
TGAgtcatcaaaacatttttcccGCCATTTTCAGTCCATAATAAGTGCGA
TAAGATTGATATTTCTATGCAAACCAATTCCATCTGTAAGAACCAATAAA
CACTGCTGGTTGAGCCAGGNGCTGGTTGAGCTTcggttgttgttttttct
ttataaggctgacttaaaaaactttaaaagctCTTCCTTGTATTTTTGCT
TTCACTTGAGAGCTTAAAAGGGACTTctttttaggcgtacaaactttcgc
caGCAGAATTTTTCGCGATTTCGAGAAATAGGGCTtgtattttataaatg
aaacatgCTTTTCAGGTTACGATGAGCATATTTTGAGCGACATTTGGTTC
CACTTGGAAGGGTGCACAAACGATTACACTTTAACTGTTCTCGATAACGA
GCCCGAAGATTTATCAGACCGCTTATCCAAAGAACTTTTCTACAAGTTGT
GTGAAATTCTACCCAACTTTCAATCAGCTCAAGTCATGTTAGAAGACTCA
AAGAAACTTCAGAAACANCCAAAGAACTTTTCTACAAGTTGTGTGAAATT
CTACCCAACTTTCAATCAGCTCAAGTCATGTTAGAAGACTCAAAGAAACT
TCAGAAACAAGATGAACCTGTATGTCTAGATGAATTTATCAAGTATACAG
TTCTATATCGATTCCCCTCCGGTACACGTCTATTTCGCCCGGAGCAGACT
CACTTTTTTGGATTATCTTTCATGAATTACGTAGTTGCTTCATTAGATGT
CATGCTGTTTTTACAATCAAAATATGATTTCAAAGATGTGTTTTTCAAAA
TGCAACAAGATTGTTATTCATCCGAACATAATGCTTACATTCTCGACCAG
AATTGCATCAAACGAAATGAGATCTTGGTGCAAACATCCATCCTCGGTGG
TCCCGATGAACGGAAAATGCCTTCACCATCTCTTTCAACCGTAAGTCTCC
TCATCAATTACCAATATTGTATATTTTCTCCTGAAATTGTCAAAATTAGT
TAGTTaagtttttgattaaaaaaccAAAGTTGGATTTTTCTTTGTACAAA
CAGACCGTGCGTTCAAATCAAATCTCTAAAAGCAGGTATTGTCAAAAGAT
TGATAAGCATAAGTTTGTGTATTTCTAGGATTGtcatttaattttctttg
atcGATTTTTTTTACATGATCTTTTCGTCTTGCAGGAGAACACGTACAAC
TACCCACTTTTCTCATCACAACCTGTTCCAGctgtttattttcaaaagca
AAAGCATTCTTCGCCTTCGAAACAACACAATAACAAGGCAGCTTTCACTC
AATTATCGAACGTTTTGAAAGGTGGTGGTGAGGAAGAGCTCAAGAAATGT
TTTCTGGAAGCACTTCGTAGCCCCTCCTTTAAGGTAAGTTGTTGAACTAA
ATTCATGCATGTTTCTTtgtaagcataacgcttataagcatctgaaggct
cagatttgcagattttctaagcataacataagcatatatgtgAGCCTGAA
ATATTGAAG

Coding sequence (CDS) from alignment at sc0001353:2987..10445+

>TCONS_00035697 ID=TCONS_00035697|Name=TCONS_00035697|organism=Clytia hemisphaerica|type=CDS|length=2964bp|location=Sequence derived from alignment at sc0001353:2987..10445+ (Clytia hemisphaerica)
GATAAATTCGATTTGGTCTCGATTGTTCAAAAAACTTTCCAAGCAACCCC
AAACAAATCAACATGGCTTCCCGTTTTTGTTCGATTTTGGGACTTCTTGT
CAACATTGTATGATATTTCTTTAATCCATCTTATAATATTTAATAGAAGA
GatatattgaacaaaaaaaaaatgttgggAAGTGAAGGAGAAGAGGTAGA
GGAGCAATATTTGTTGAATCTGCAAGAATTTGTGGAAGTTGTTCAACCTC
AAATGAAAGAGCTGGAAGCCCTCACTCAAGTGGAAGAGTTTGTATCCAGT
CTGGAATCAACTGATCCGAACTTCCATCGCTATGGTTTCATTTCTCAAAT
GAAAGATTCTTTGGACACAGAACTGACACCTTTGATTGATCAAATGTTAC
TGGATGGAAAAGAAGCTGACAATGAAGACCATTTAAAAGCAAATAGAAGT
TCAGAACTGATGAAAACTGAAGAATTCCAAAACATTTCATCACATATTCT
GAAATCAGTACAAGCAGCTGCTTCTAAGATTACAGATCATTTAAATTCTG
ACACTTTTGACTTTTCGGGTCCGTTTCATAAATTCAAGTCAAgtaatgat
tattttaatgCCAGTCAATCTGACTGTTCCACTGCGGATGGAATGGAGTT
CATGTTTATGTCACCAGACCGTTACAAAACATTGGCCCAAGATATTTCTC
CATCAAGACCCATTGAACAACGTCTGAAAGCTCTTTCAATTTTGCAGCAT
CTACCTCAAGGTGATTTGGTTGCGAGTGAAGCATGGCAGCTGACCAAAGA
AGGGATCCACAAAGCACTAAATGATTATGATGAGGAGATCAATCAAAAAG
CGCTGAAACttttatccaaaatatttgTGAGTGGTAACAGTCATGTCATT
AGAGAATACTTTTTATTGTTGGTCGAAAATTTGTCAGACTATTTCAATGA
TAGTACGTCACATATGGTTTCACTTAATGGTGGACTGGACCTTGGTGATC
GTAGAAATGTTTTACTTCTAAAAAAATTCCGCCTCCTTAATGAGATTCAG
AAGGAACTACCTAAAACATGGCTACGCTATTCAGAGCGGTATATTGAGGA
GATGATTGAAGCAATGGTCCACTTACTAGGGATCTCTCCATCCAGAATGG
GAGGAGGGAACGAGTGCACTTTATTGAATCCTTATCATTTCCTGTGCATG
GTTGATCCACATGGTGTTTGGTTTAAAAAATGGATCCATGGTTTTTACAG
TCGTTCGCACCTTCTAAACTCGATTCATAACCATATGTCTTTCTTGAAAA
GATCGATAAAGAGTTGCATTGAAGTTTGCCGCAAACTGCACCATAATAAC
GAACAGGTCACACCAAATGATGAATCTTCAGATTCTATGATTTTTGATCa
gttttatattttgtacattcaATTTATACATTCAGTCAATATTCTTGTNT
CACACCAAATGATGAATCTTCAGATTCTATGAGATAAATTCGATTTGGTC
TCGATTGTTCAAAAAACTTTCCAAGCAACCCCAAACAAATCAACATGGCT
TCCCGTTTTTGTTCGATTTTGGGACTTCTTGTCAACATTGTATGATATTT
CTTTAATCCATCTTATAATATTTAATAGAAGAGatatattgaacaaaaaa
aaaatgttgggAAGTGAAGGAGAAGAGGTAGAGGAGCAATATTTGTTGAA
TCTGCAAGAATTTGTGGAAGTTGTTCAACCTCAAATGAAAGAGCTGGAAG
CCCTCACTCAAGTGGAAGAGTTTGTATCCAGTCTGGAATCAACTGATCCG
AACTTCCATCGCTATGGTTTCATTTCTCAAATGAAAGATTCTTTGGACAC
AGAACTGACACCTTTGATTGATCAAATGTTACTGGATGGAAAAGAAGCTG
ACAATGAAGACCATTTAAAAGCAAATAGAAGTTCAGAACTGATGAAAACT
GAAGAATTCCAAAACATTTCATCACATATTCTGAAATCAGTACAAGCAGC
TGCTTCTAAGATTACAGATCATTTAAATTCTGACACTTTTGACTTTTCGG
GTCCGTTTCATAAATTCAAGTCAAgtaatgattattttaatgCCAGTCAA
TCTGACTGTTCCACTGCGGATGGAATGGAGTTCATGTTTATGTCACCAGA
CCGTTACAAAACATTGGCCCAAGATATTTCTCCATCAAGACCCATTGAAC
AACGTCTGAAAGCTCTTTCAATTTTGCAGCATCTACCTCAAGGTGATTTG
GTTGCGAGTGAAGCATGGCAGCTGACCAAAGAAGGGATCCACAAAGCACT
AAATGATTATGATGAGGAGATCAATCAAAAAGCGCTGAAACttttatcca
aaatatttgTGAGTGGTAACAGTCATGTCATTAGAGAATACTTTTTATTG
TTGGTCGAAAATTTGTCAGACTATTTCAATGATAGTACGTCACATATGGT
TTCACTTAATGGTGGACTGGACCTTGGTGATCGTAGAAATGTTTTACTTC
TAAAAAAATTCCGCCTCCTTAATGAGATTCAGAAGGAACTACCTAAAACA
TGGCTACGCTATTCAGAGCGGTATATTGAGGAGATGATTGAAGCAATGGT
CCACTTACTAGGGATCTCTCCATCCAGAATGGGAGGAGGGAACGAGTGCA
CTTTATTGAATCCTTATCATTTCCTGTGCATGGTTGATCCACATGGTGTT
TGGTTTAAAAAATGGATCCATGGTTTTTACAGTCGTTCGCACCTTCTAAA
CTCGATTCATAACCATATGTCTTTCTTGAAAAGATCGATAAAGAGTTGCA
TTGAAGTTTGCCGCAAACTGCACCATAATAACGAACAGGTCACACCAAAT
GATGAATCTTCAGATTCTATGATTTTTGATCagttttatattttgtacat
tcaATTTATACATTCAGTCAATATTCTTGTNTCACACCAAATGATGAATC
TTCAGATTCTATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020926	XLOC_020926	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00035697-protein	TCONS_00035697-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00035697-exon-sc0001353-1491911889:2987..3139	TCONS_00035697-exon-sc0001353-1491911889:2987..3139	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1510915933:2987..3139	TCONS_00035697-exon-sc0001353-1510915933:2987..3139	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1575043694:2987..3139	TCONS_00035697-exon-sc0001353-1575043694:2987..3139	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1491911889:6654..8935	TCONS_00035697-exon-sc0001353-1491911889:6654..8935	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1510915933:6654..8935	TCONS_00035697-exon-sc0001353-1510915933:6654..8935	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1575043694:6654..8935	TCONS_00035697-exon-sc0001353-1575043694:6654..8935	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1491911889:9252..9876	TCONS_00035697-exon-sc0001353-1491911889:9252..9876	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1510915933:9252..9876	TCONS_00035697-exon-sc0001353-1510915933:9252..9876	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1575043694:9252..9876	TCONS_00035697-exon-sc0001353-1575043694:9252..9876	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1491911889:10122..10445	TCONS_00035697-exon-sc0001353-1491911889:10122..10445	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1510915933:10122..10445	TCONS_00035697-exon-sc0001353-1510915933:10122..10445	Clytia hemisphaerica	exon
TCONS_00035697-exon-sc0001353-1575043694:10122..10445	TCONS_00035697-exon-sc0001353-1575043694:10122..10445	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001353	supercontig	sc0001353:2987..10445 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0886	10.4553	6.20653	3.83155	12.5751	8.44949	7.29796	6.67677	4.04301	6.17343	6.13547	4.07916	2.55645	2.54685	2.25848	3.66458	2.99464	3.0343	3.0646	2.57297	3.24112	3.41476	7.5847	6.849	5.27878	5.82139	4.59354	4.88265	4.81212	5.10441

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR032735	BROMI
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

Blast

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BLAST of TCONS_00035697 vs. Swiss-Prot (Human)
Match: BROMI (Protein broad-minded OS=Homo sapiens GN=TBC1D32 PE=2 SV=4)

HSP 1 Score: 157.147 bits (396), Expect = 1.000e-38
Identity = 117/437 (26.77%), Postives = 210/437 (48.05%), Query Frame = 3

Query:  201 EEQYLLN--LQEFVEVVQPQMKELEALTQVEEFVSSLESTDPNFHRYGFISQMKDSLDTELTPLIDQMLLDGKEADNE------DHLKANRSSELMKTEEFQNISSHILKSVQAAASKITDHLNSDTF---DFSGPFHKFKS-SNDYFNASQSDCSTADGMEFMFMSPDRYKTLAQDISPSRPIEQRLKALSILQHLPQGDLVASEAWQLTKEGIHKALNDYDEEINQKALKLLSKIFVSGNSHVIREYFLLLVENLSDYFNDSTSHMVSLNGGLDLGDRRNVLLLKKFRLLNEIQKELPKTWLRYSERYIEEMIEAMVHLLGISPSRMGGGNECTLLNPYHFLCMVDPHGVWFKKWIHGFYSRSHLLNSIHN-HMSFLKRSIKSCI---EVCRKLHHNNEQVTPNDESSDSMIFDQFYIL-----YIQFIHSVNIL 1448
            E+Q +L   L+   + V+ ++    +L   EE +  LE TD NFH Y F+  ++  +   L  +I++ +       N+      D +    +    +++E++ +  ++   + A    + +    D     +      K KS S    N S SD S     +F      + + +   + P +P E R +AL  L   P  D++  E W    E +  +L+D D   + + LK  ++ F+    H+ +E +  L + L  YF    +H+ +L+ G+D+ +     LLKK RLLNE QKE P  W+R+ E+Y+EE++E+ + LL +  ++    ++  +L+P +F  +VD   VWFKKW+H  YSR+ +L  +   + S +  +I+ C+   E+C K    +E +  +    +      FY L     YI FIHS+ +L
Sbjct:    7 EDQAMLQAMLRRLFQSVKEKITGAPSLECAEEILLHLEETDENFHNYEFVKYLRQHIGNTLGSMIEEEMEKCTSDRNQGEECGYDTVVQQVTKRTQESKEYKEMMHYLKNIMIAVVESMINKFEEDETRNQERQKKIQKEKSHSYRTDNCSDSDSSLNQSYKF---CQGKLQLILDQLDPGQPKEVRYEALQTLCSAPPSDVLNCENWTTLCEKLTVSLSDPDPVFSDRILKFCAQTFLLSPLHMTKEIYTSLAKYLESYFLSRENHIPTLSAGVDITNPNMTRLLKKVRLLNEYQKEAPSFWIRHPEKYMEEIVESTLSLLTVKHNQSHVVSQ-KILDPIYFFALVDTKAVWFKKWMHAHYSRTTVLRLLETKYKSLVTTAIQQCVQYFEMC-KTRKADETLGHSKHCRNKQ--KTFYYLGQELQYIYFIHSLCLL 436

The following BLAST results are available for this feature:

BLAST of TCONS_00035697 vs. Swiss-Prot (Human)

BLAST of TCONS_00035697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
BROMI	1.000e-38	26.77	Protein broad-minded OS=Homo sapiens GN=TBC1D32 PE...	[more]

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TCONS_00035697 (transcript) - C. hemisphaerica