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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035628 ID=TCONS_00035628|Name=TCONS_00035628|organism=Clytia hemisphaerica|type=transcript|length=2509bpRun BLAST on NCBI protein sequence of TCONS_00035628-protein >TCONS_00035628-protein ID=TCONS_00035628-protein|Name=TCONS_00035628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp MASGKGKQSLEPISTTSIEDSDTDSDAGANLRSPKDKARREKIIDNWKHIRun BLAST on NCBI transcript from alignment at sc0001341:47569..67076+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035628 ID=TCONS_00035628|Name=TCONS_00035628|organism=Clytia hemisphaerica|type=transcript|length=19508bp|location=Sequence derived from alignment at sc0001341:47569..67076+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001341:47569..67076+ >TCONS_00035628 ID=TCONS_00035628|Name=TCONS_00035628|organism=Clytia hemisphaerica|type=CDS|length=30786bp|location=Sequence derived from alignment at sc0001341:47569..67076+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035628 vs. Swiss-Prot (Human)
Match: AMPD2 (AMP deaminase 2 OS=Homo sapiens GN=AMPD2 PE=1 SV=2) HSP 1 Score: 676.781 bits (1745), Expect = 0.000e+0 Identity = 335/576 (58.16%), Postives = 435/576 (75.52%), Query Frame = 1
Query: 772 FQRINVGEQGAAGVPVDELNQAAQLLCEALYIRAKYMALSLQSFNSTTASSLENVNDEYKLDKMYNKLAEDAVTTPRPT--CVLEQGNPNLNCDGSVWKPFECDIPGDIGYNVELVDGVFQVLSCKKPVDGDSPNKKSTLHPYPCIEEFMEDQKFLLALSTHGPVKSFTFRRLQYLHSKFKLHCLLNEMKELASQKEIPHRDFYNVRKVDTHIHASSAMNQKHLLRFIXXXXXXHGDDVVEMKDGKPVTLSQVFDELNLNVYDLSVDKLDVHADGSLFHRFDKFNAKYNPIGKSKVREIFMKTDNYMGGRYFAELIKEVIEDLEESKYQNAELRISIYGRKKSEWDSLAKWVIKHDISSYNVRWLIQIPRLYDIYFANKQVESFEEIIDNIFRPLFEATINPSSHPEMHQFLRQVIGFDSVDDESKPEPFSFSKHSPKPKNWKKEHNPPXXXXXXXXXSNLVVLNHLRRERGFNIFQLRPHCGEAGPVHHVVTGFMLAENISHGLLLRKVPAMQYLYYLAQIGVAMSPLSNNSLFLNYHRNPLQDFFQRGLLISISTDDPLQFHFTKVTKRSQFEI 2493
FQR+ + + GVP +L AA+ + AL+IR KYMALSLQSF TT L+ + ++ + Y + + V+ P LEQ +P +C+ S +PGD+G + +V GV V + ++P D + L PYP ++EF+ D L+AL +GP+KSF +RRLQYL SKF++H LLNEMKELA+QK++PHRDFYN+RKVDTHIHASS MNQKHLLRFIK+ +K+H +++V ++ G+ TL +VF+ +NL YDLSVD LDVHAD + FHRFDKFNAKYNPIG+S +REIF+KTDN + G+YFA +IKEV+ DLEESKYQNAELR+SIYGR + EWD LA+W + H + S NVRWL+Q+PRL+D+Y Q+ +F+E+++NIF PLFEAT++P+SHPE+H FL V GFDSVDDESKPE F+ SP P+ W +E NPPYAYYLYY ++N+ +LNHLRR+RGF+ F LRPHCGEAGP+HH+V+ FMLAENISHGLLLRK P +QYLYYLAQIG+AMSPLSNNSLFL+YHRNPL ++ RGL++S+STDDPLQFHFTK ++ I
Sbjct: 219 FQRVTISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQGPDTPVSADAPVHPPALEQ-HPYEHCEPST-------MPGDLGLGLRMVRGVVHVYTRREP---DEHCSEVEL-PYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIKTDNRVSGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVMHRVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEYSI 782 The following BLAST results are available for this feature:
BLAST of TCONS_00035628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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