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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035459 ID=TCONS_00035459|Name=TCONS_00035459|organism=Clytia hemisphaerica|type=transcript|length=1844bpRun BLAST on NCBI protein sequence of TCONS_00035459-protein >TCONS_00035459-protein ID=TCONS_00035459-protein|Name=TCONS_00035459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp MSALQQIEDIVGCGFDKKDQLRFEIRFVNSWVDQIFLEKMIPEGSPLRLRRun BLAST on NCBI transcript from alignment at sc0001314:38389..45009- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035459 ID=TCONS_00035459|Name=TCONS_00035459|organism=Clytia hemisphaerica|type=transcript|length=6621bp|location=Sequence derived from alignment at sc0001314:38389..45009- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001314:38389..45009- >TCONS_00035459 ID=TCONS_00035459|Name=TCONS_00035459|organism=Clytia hemisphaerica|type=CDS|length=3456bp|location=Sequence derived from alignment at sc0001314:38389..45009- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035459 vs. Swiss-Prot (Human)
Match: ZFP2 (Zinc finger protein 2 homolog OS=Homo sapiens GN=ZFP2 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.333e-23 Identity = 57/141 (40.43%), Postives = 83/141 (58.87%), Query Frame = 3
Query: 870 MLGTMVHECENCHMTFADAEYLQRHQTRCKNHADSAIKCNICGRGFTAKGSLELHIDAVHLKKKEFVCNICGKAFSRKHILKIHLDTHYGKKDFQCAVCGKRFLQKSNLNRHERIHESKNFGYGCRFCGQAFTQNKHLKNH 1292
+G ++EC C TF+ + L +HQ + + KCN+CG+ F + SL +H +H +K + CN CGKAFS+ L +H TH G+K +QC CGK F + S+L +HERIH + Y C CG+AFTQ+ +L H
Sbjct: 96 FVGKKIYECNQCSKTFSQSSSLLKHQR--IHTGEKPYKCNVCGKHFIERSSLTVH-QRIHTGEKPYKCNECGKAFSQSMNLTVHQRTHTGEKPYQCKECGKAFHKNSSLIQHERIHTGEK-PYKCNECGKAFTQSMNLTVH 232 HSP 2 Score: 88.9669 bits (219), Expect = 1.279e-18 Identity = 54/140 (38.57%), Postives = 74/140 (52.86%), Query Frame = 3
Query: 876 GTMVHECENCHMTFADAEYLQRHQTRCKNH-ADSAIKCNICGRGFTAKGSLELHIDAVHLKKKEFVCNICGKAFSRKHILKIHLDTHYGKKDFQCAVCGKRFLQKSNLNRHERIHESKNFGYGCRFCGQAFTQNKHLKNH 1292
G +EC C F+ + L HQ +NH + KCN CG+ F+ L H +H K F CN CGKAFS+ L H H G+K ++C VCGK F +S+L H+ IH + Y C CG+AF+Q+ +L H
Sbjct: 266 GEKPYECSQCGKAFSKSSTLTLHQ---RNHTGEKPYKCNKCGKSFSQSTYLIEH-QRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEK-PYECNECGKAFSQSAYLIEH 400 HSP 3 Score: 86.6557 bits (213), Expect = 6.566e-18 Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 3
Query: 876 GTMVHECENCHMTFADAEYLQRHQTRCKNHADSAIKCNICGRGFTAKGSLELHIDAVHLKKKEFVCNICGKAFSRKHILKIHLDTHYGKKDFQCAVCGKRFLQKSNLNRHERIHESKNFGYGCRFCGQAFTQNKHLKNH 1292
G EC C F+ L +H R + + +C +CG+ FT + SL +H +H +K + CN CGKAFS+ L H H G+K ++C CGK F++ S+L H+R H + Y C CG+AF+++ +L H
Sbjct: 322 GVKPFECNECGKAFSKNSSLTQH--RRIHTGEKPYECMVCGKHFTGRSSLTVH-QVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEKPYECDQCGKAFIKNSSLTVHQRTHTGEK-PYQCNECGKAFSRSTNLTRH 456 HSP 4 Score: 83.5741 bits (205), Expect = 7.582e-17 Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 3
Query: 876 GTMVHECENCHMTFADAEYLQRHQTRCKNHAD-SAIKCNICGRGFTAKGSLELHIDAVHLKKKEFVCNICGKAFSRKHILKIHLDTHYGKKDFQCAVCGKRFLQKSNLNRHERIHESKNFGYGCRFCGQAFTQNKHLKNH 1292
G ++C C +F+ + YL HQ + H+ +CN CG+ F+ SL H +H +K + C +CGK F+ + L +H H G+K ++C CGK F Q + L H+RIH + Y C CG+AF +N L H
Sbjct: 294 GEKPYKCNKCGKSFSQSTYLIEHQ---RLHSGVKPFECNECGKAFSKNSSLTQH-RRIHTGEKPYECMVCGKHFTGRSSLTVHQVIHTGEKPYECNECGKAFSQSAYLIEHQRIHTGEK-PYECDQCGKAFIKNSSLTVH 428 HSP 5 Score: 80.8777 bits (198), Expect = 5.461e-16 Identity = 50/142 (35.21%), Postives = 73/142 (51.41%), Query Frame = 3
Query: 876 GTMVHECENCHMTFADAEYLQRHQTRCKNH-ADSAIKCNICGRGFTAKGSLELHIDAVHLKKKEFVCNICGKAFSRKHILKIHLDTHYGKKDFQCAVCGKRFLQKSNLNRHERIHESKNFGYGCRFCGQAFTQNKHLKNHMM 1298
G +EC C F+ + +L HQ ++H + +C+ CG+ F+ +L LH H +K + CN CGK+FS+ L H H G K F+C CGK F + S+L +H RIH + Y C CG+ FT L H +
Sbjct: 238 GEKPYECNECGKAFSQSMHLIVHQ---RSHTGEKPYECSQCGKAFSKSSTLTLH-QRNHTGEKPYKCNKCGKSFSQSTYLIEHQRLHSGVKPFECNECGKAFSKNSSLTQHRRIHTGEK-PYECMVCGKHFTGRSSLTVHQV 374 The following BLAST results are available for this feature:
BLAST of TCONS_00035459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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