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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034986 ID=TCONS_00034986|Name=TCONS_00034986|organism=Clytia hemisphaerica|type=transcript|length=4341bpRun BLAST on NCBI protein sequence of TCONS_00034986-protein >TCONS_00034986-protein ID=TCONS_00034986-protein|Name=TCONS_00034986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp MEDWSDDSDDELDDFEIGKIMIVTQTPPPPKKHDRTGNFTNRTKMTQELARun BLAST on NCBI transcript from alignment at sc0001238:11130..52636+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00034986 ID=TCONS_00034986|Name=TCONS_00034986|organism=Clytia hemisphaerica|type=transcript|length=41507bp|location=Sequence derived from alignment at sc0001238:11130..52636+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001238:11130..52636+ >TCONS_00034986 ID=TCONS_00034986|Name=TCONS_00034986|organism=Clytia hemisphaerica|type=CDS|length=15363bp|location=Sequence derived from alignment at sc0001238:11130..52636+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00034986 vs. Swiss-Prot (Human)
Match: LAR1B (La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2) HSP 1 Score: 283.108 bits (723), Expect = 3.253e-79 Identity = 199/473 (42.07%), Postives = 272/473 (57.51%), Query Frame = 3
Query: 1659 REELDFEFDEDITNPPANMXXXXXXXXXXXXXFEI-----GKIMIVTQTPPPPKKH---DRTGNFTNRTKMTQELAHMISXXXXXXXXXXXXXXXXXXXXNRKVELSSSIGNVGMISEKDFHELKRQVYDSSDSEADQIVMPPKSNKARVPKTPEKNEHTHASLSERVKEISTDILGSSELHVNAPEFRPKLRTESMTKAKSVPSNDQRTPGSRRGRDXXXXXXXXXXIPRFFPAIVKE--DLQNKAPRYHKSKYGNNPTVEQHVGWLFSPKAKKYXXXXXXXXXDTGMGGPISPNXXXXXXXXXXXXXXXXXXXIPHFEHPSHSLLKENNFVQHVYYKYHAKCLKERKKVGVGQSQEMNTLFRFWSFFLRAHFNKKMYNEFKQLAVEDASAGYRYGIECLFRYYSYGLEKRFKKDLFRDFEEEVLRDYENGNLYGLEKFWAFLKYYKGKTHFDVSSKVDKVLEPFSHVDDFR 3047
+EELDF FDE+I ++ D D D+EI KI+IVTQTPP KKH DRTG +R K+T ELA +I+DGLYYYEQDL E+D+ + K E+ + + +IS++ F L ++ + E V P +S + V H + E++ + SE+ A L T + P+ +TP + R +D + PRF+P +VKE + K+PR K+++ NP +E HVGW+ + + G + N S + SYG S P F+HPSH LLKEN F Q VY+KY +CL ERK++G+GQSQEMNTLFRFWSFFLR HFNKKMY EF+QLA EDA YRYG+ECLFR+YSYGLEK+F++++F+DF+EE +DYE+G LYGLEKFWA+LKY + KT + K+ + L F ++DFR
Sbjct: 408 QEELDFLFDEEIEQ--IGRKNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSELAKVINDGLYYYEQDLWMEEDENKHTAIKQEVEN-FKKLNLISKEQFENLTPELPFEPNQEVP--VAPSQSRQGGVQGV------LHIPKKDLTDELAQKLFDVSEITSAA--MVHSLPTAVPESPRIHPTRTPKTPRTPRLQDPNK-------TPRFYP-VVKEPKAIDVKSPRKRKTRHSTNPPLECHVGWVMDSRDR-----------GPGTSSVSTSNASPSEGAPLAGSYGCTPHSFPKFQHPSHELLKENGFTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEKFWAYLKYSQSKTQ-SIDPKLQEYLCSFKRLEDFR 847 HSP 2 Score: 91.2781 bits (225), Expect = 2.221e-18 Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 2
Query: 1172 VVLKDMIKKQVEYYFSEDNLIGDFYLRQRMRPDGSIPIELLATFNRIQKLTNDYNVILESLQDSVEILCDGYAVKPKITPDHWPI 1426
+LK+ IK+Q+EYYFS +NL DF+LR +M G +PI L+A F R+Q LT + N+ILE+L+DS E+ ++ KI P+ WPI
Sbjct: 213 ALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPI 297 The following BLAST results are available for this feature:
BLAST of TCONS_00034986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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