TCONS_00034986-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00034986-protein
Unique Name	TCONS_00034986-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	568

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00034986-protein ID=TCONS_00034986-protein|Name=TCONS_00034986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp
MEDWSDDSDDELDDFEIGKIMIVTQTPPPPKKHDRTGNFTNRTKMTQELA
HMISDGLYYYEQDLLDEDDDGSYYNRKVELSSSIGNVGMISEKDFHELKR
QVYDSSDSEADQIVMPPKSNKARVPKTPEKNEHTHASLSERVKEISTDIL
GSSELHVNAPEFRPKLRTESMTKAKSVPSNDQRTPGSRRGRDSSSSNKSK
KNIPRFFPAIVKEDLQNKAPRYHKSKYGNNPTVEQHVGWLFSPKAKKYRS
RNNSSSSDTGMGGPISPNLLSSSLGSTSSSYGSLSSSIPHFEHPSHSLLK
ENNFVQHVYYKYHAKCLKERKKVGVGQSQEMNTLFRFWSFFLRAHFNKKM
YNEFKQLAVEDASAGYRYGIECLFRYYSYGLEKRFKKDLFRDFEEEVLRD
YENGNLYGLEKFWAFLKYYKGKTHFDVSSKVDKVLEPFSHVDDFRREAAR
IQREKQPSKPSENVTAETTRNKKEDSKKDDKKSGDKSRDDKRGGKHRNEK
RQSNEGKHDHRKDKSNENRPRDEKKTNNHTKHNKTSTSKISKEEKCSAQD
SVTNNNKNEIPKEQITAQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020370	XLOC_020370	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00034986	TCONS_00034986	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006607	DM15

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006607	Protein of unknown function DM15	SMART	SM00684	dm15	coord: 303..344 e-value: 6.4E-18 score: 75.5 coord: 345..383 e-value: 5.4E-18 score: 75.8 coord: 384..419 e-value: 3.5 score: 5.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 451..568
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..210

Blast

[Close]

BLAST of TCONS_00034986-protein vs. Swiss-Prot (Human)
Match: LARP1 (La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.362e-114
Identity = 208/452 (46.02%), Postives = 268/452 (59.29%), Query Frame = 0

Query:    4 WSDD-SDDELDDFEIGKIMIVTQTPPPPKKH---DRTGNFTNRTKMTQELAHMISDGLYYYEQDLLDEDDDGSYYNRKVELSSSIGNVGMISEKDFHELKRQVYDSSDSEADQIVMPPKSNKARVPKTPEKNEHTHASLSERVKEISTDILGSSELHVNAPEFRPKLRTESMTKAKSVPSNDQRTPGSRRGRDSSSSN----KSKKNIPRFFPAIVKED--LQNKAPRYHKSKYGNNPTVEQHVGWLFSPKAKKYRSRNNSSSSDTGMGGPISPNLLSSSLGSTSSSYGSLSSSIPHFEHPSHSLLKENNFVQHVYYKYHAKCLKERKKVGVGQSQEMNTLFRFWSFFLRAHFNKKMYNEFKQLAVEDASAGYRYGIECLFRYYSYGLEKRFKKDLFRDFEEEVLRDYENGNLYGLEKFWAFLKYYKGKTHFDVSSKVDKVLEPFSHVDDFR 445
            WSD+ SD E+DD ++ KI+IVTQTP   ++H   DRTGN T+R KM+ ELA +I+DGL+YYEQDL  E  +  Y   K E+ +    V MIS + F  L  +              PP      VP  P            R +++ TD L +      APE          T A+S+P+    +P  R  R   +      K      RF+P +VKE   L  K PR  K+++ +NP +E HVGW+    ++++R R  S SS    G P            T  SYG    S+P F+HPSH LLKEN F QHVY+KY  +CL ERK++G+GQSQEMNTLFRFWSFFLR HFNKKMY EFKQLA+EDA  GYRYG+ECLFRYYSYGLEK+F+ D+F+DF+EE ++DYE G LYGLEKFWAFLKY K K + D+  K+ + L  F  ++DFR
Sbjct:  626 WSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVEN-FKKVNMISREQFDTLTPE--------------PPVDPNQEVPPGPP-----------RFQQVPTDALANKLF--GAPE--------PSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQTSRFYP-VVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMD--SREHRPRTASISSSPSEGTP------------TVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAK-NLDIDPKLQEYLGKFRRLEDFR 1025

The following BLAST results are available for this feature:

BLAST of TCONS_00034986-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00034986-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LARP1	2.362e-114	46.02	La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1...	[more]

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TCONS_00034986-protein (polypeptide) - C. hemisphaerica