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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00034967 ID=TCONS_00034967|Name=TCONS_00034967|organism=Clytia hemisphaerica|type=transcript|length=3146bpRun BLAST on NCBI protein sequence of TCONS_00034967-protein >TCONS_00034967-protein ID=TCONS_00034967-protein|Name=TCONS_00034967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp DSLILNFNTRAMALGLGFLYLLILRVCTVKTTLSSHEIQKIREKIFDGYDRun BLAST on NCBI transcript from alignment at sc0001236:42837..64837- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00034967 ID=TCONS_00034967|Name=TCONS_00034967|organism=Clytia hemisphaerica|type=transcript|length=22001bp|location=Sequence derived from alignment at sc0001236:42837..64837- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001236:42837..64837- >TCONS_00034967 ID=TCONS_00034967|Name=TCONS_00034967|organism=Clytia hemisphaerica|type=CDS|length=13176bp|location=Sequence derived from alignment at sc0001236:42837..64837- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00034967 vs. Swiss-Prot (Human)
Match: GBRB3 (Gamma-aminobutyric acid receptor subunit beta-3 OS=Homo sapiens GN=GABRB3 PE=1 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 3.481e-54 Identity = 137/452 (30.31%), Postives = 233/452 (51.55%), Query Frame = 3
Query: 114 IQKIREKIFDGYDANIMPLEEGRPINVSVDFFINDMVPLHAASMHFSIDCFFTLQWRDYRLQWDP-PNNETYVLPFDDRIAKDLWMPNVYFPELKHGYNHKVPMPNELIYLYPDGNVVYNQRILMDSFCPMNLTYYPFDMQHCRLTVEPYSYNMKFVVLFWRDG-KAIDTSEKGNLYVIDFKDVDMSLNSKIVDWGIYGNYSRLSIHLDMTRHSQLSLLRDFIPCILIVFLSWVGFWINYKSTPARVALGXXXXXXXXXXXNSVRLNSPHSDSFRSIDVYTLGCNIFVFAAIVEYALV-----GMSSPKLHHNSEVPSQINETKMXXXXXXXXXXXXXXXXXXXXXXDECVPLSSIPGFQEEKRESGCTFPSRRRKKDSTSISLET----VKEDSSPKTNGLTHAERKKSSVRQLGPVVIVTDDIHAVDKYSRSIFPGVFMILNIIFFVFHV 1436
+++ +K+ GYD + P G P+ V ++ I + + +M +++ +F WRD RL + P N L D+R+A LW+P+ YF K + H V + N +I L+PDG V+Y RI + C M+L YP D Q+C L +E Y Y + +WR G KA+ E+ + + F V+ L S+ V + G Y RLS+ + R+ +L+ ++P ILI LSWV FWINY ++ ARVALGITTVLT+ T+ +R P ++ID+Y +GC +FVF A++EYA V G + +E ++ + + + R + ++ ++ + G + R S +F + + S+ E + + S P TH R+ S ++ P + D++A+D++SR +FP F + N+++++++V
Sbjct: 37 VKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLN----LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVER--IELPQFSIVEHRLVSRNVVFAT-GAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSESNRVDAHGNILLTSLEVHNE----MNEVSGGIGDTRNSAISFDNSGIQYRKQSMPREGHGRFLGDRSLPHKK--THLRRRSSQLKIKIPDLT---DVNAIDRWSRIVFPFTFSLFNLVYWLYYV 472 The following BLAST results are available for this feature:
BLAST of TCONS_00034967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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