TCONS_00034967-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00034967-protein
Unique Name	TCONS_00034967-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	487

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00034967-protein ID=TCONS_00034967-protein|Name=TCONS_00034967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
DSLILNFNTRAMALGLGFLYLLILRVCTVKTTLSSHEIQKIREKIFDGYD
ANIMPLEEGRPINVSVDFFINDMVPLHAASMHFSIDCFFTLQWRDYRLQW
DPPNNETYVLPFDDRIAKDLWMPNVYFPELKHGYNHKVPMPNELIYLYPD
GNVVYNQRILMDSFCPMNLTYYPFDMQHCRLTVEPYSYNMKFVVLFWRDG
KAIDTSEKGNLYVIDFKDVDMSLNSKIVDWGIYGNYSRLSIHLDMTRHSQ
LSLLRDFIPCILIVFLSWVGFWINYKSTPARVALGITTVLTIVTLTNSVR
LNSPHSDSFRSIDVYTLGCNIFVFAAIVEYALVGMSSPKLHHNSEVPSQI
NETKMRRKLLRKRRRNKKKSNNNNDSDDECVPLSSIPGFQEEKRESGCTF
PSRRRKKDSTSISLETVKEDSSPKTNGLTHAERKKSSVRQLGPVVIVTDD
IHAVDKYSRSIFPGVFMILNIIFFVFHVLTPDTVLST

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_020357	XLOC_020357	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00034967	TCONS_00034967	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006028	GABAA/Glycine_rcpt
IPR006201	Neur_channel
IPR006202	Neur_chan_lig-bd
IPR006029	Neurotrans-gated_channel_TM
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity
molecular_function	GO:0005216	ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006028	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	PRINTS	PR00253	GABAARECEPTR	coord: 457..477 score: 33.46 coord: 278..299 score: 54.63 coord: 312..333 score: 46.98 coord: 252..272 score: 46.94
IPR006201	Neurotransmitter-gated ion-channel	PRINTS	PR00252	NRIONCHANNEL	coord: 165..179 score: 49.71 coord: 84..100 score: 34.31 coord: 119..130 score: 25.19
None	No IPR available	GENE3D	1.20.58.390		coord: 253..484 e-value: 5.5E-37 score: 126.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..435
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 40..248 e-value: 1.4E-40 score: 138.9
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 38..248 e-value: 3.4E-49 score: 166.8
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 39..248
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 258..474 e-value: 1.2E-26 score: 94.1
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 257..479
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 165..179

Blast

[Close]

BLAST of TCONS_00034967-protein vs. Swiss-Prot (Human)
Match: GBRB3 (Gamma-aminobutyric acid receptor subunit beta-3 OS=Homo sapiens GN=GABRB3 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.450e-67
Identity = 145/475 (30.53%), Postives = 241/475 (50.74%), Query Frame = 0

Query:   21 LLILRVCTVKTTLSSHEIQKIRE---KIFDGYDANIMPLEEGRPINVSVDFFINDMVPLHAASMHFSIDCFFTLQWRDYRLQWDP-PNNETYVLPFDDRIAKDLWMPNVYFPELKHGYNHKVPMPNELIYLYPDGNVVYNQRILMDSFCPMNLTYYPFDMQHCRLTVEPYSYNMKFVVLFWRDG-KAIDTSEKGNLYVIDFKDVDMSLNSKIVDWGIYGNYSRLSIHLDMTRHSQLSLLRDFIPCILIVFLSWVGFWINYKSTPARVALGITTVLTIVTLTNSVRLNSPHSDSFRSIDVYTLGCNIFVFAAIVEYALVGM----SSPKLHHNSEVPSQINETKMRRKLLRKRRRNKKKSNNNNDSDDECVPLSSIPGFQEEKRESGCTFPSRRRKKDSTSISLETVKEDSSPKTNGLTHAER----KKSSVR----QLGPVVIVTDDIHAVDKYSRSIFPGVFMILNIIFFVFHV 478
            +L+  VC  ++      +  ++E   K+  GYD  + P   G P+ V ++  I  +  +   +M +++  +F   WRD RL +   P N    L  D+R+A  LW+P+ YF   K  + H V + N +I L+PDG V+Y  RI   + C M+L  YP D Q+C L +E Y Y    +  +WR G KA+   E+  + +  F  V+  L S+ V +   G Y RLS+   + R+    +L+ ++P ILI  LSWV FWINY ++ ARVALGITTVLT+ T+   +R   P     ++ID+Y +GC +FVF A++EYA V        P+            + K+  K  + +    K  +N  D+    + L+S+    E    SG    +R       +  ++  K+    + +G    +R    KK+ +R    QL   +    D++A+D++SR +FP  F + N+++++++V
Sbjct:   17 VLVAVVCCAQSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLN----LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVER--IELPQFSIVEHRLVSRNVVFAT-GAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQ-----------RQKKLAEKTAKAKNDRSKSESNRVDAHGNIL-LTSLEVHNEMNEVSGGIGDTRNSAISFDNSGIQYRKQSMPREGHGRFLGDRSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYV 472

The following BLAST results are available for this feature:

BLAST of TCONS_00034967-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00034967-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GBRB3	2.450e-67	30.53	Gamma-aminobutyric acid receptor subunit beta-3 OS...	[more]

You are here

TCONS_00034967-protein (polypeptide) - C. hemisphaerica