TCONS_00034878 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00034878
Unique Name	TCONS_00034878
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	862

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001229:25172..31458-
coding sequence from alignment at sc0001229:25172..31458-

transcript sequence

>TCONS_00034878 ID=TCONS_00034878|Name=TCONS_00034878|organism=Clytia hemisphaerica|type=transcript|length=862bp
AGTATGGATGGACCGTTATAAAAGAATATTCTATCGAGCACGTGGTGGAA
ATATGAACGAACCATTACCGAGaatcaaagAACGACGTTTAATCAGAGAA
AGACTGAAATGTCGTCCTTTCGATTGGTATCTGATGGAAGTCTATCCAGA
GTTGAGAGTTCCGAATGTTGACGAGTTGGCTTATGGGGAGATCAAGCAAA
TTTATAAGGGACAATCGTATTGCTTATCTGAGTCCAAAACTTCAAAGGTT
TTGGCAGTGAAATGTATTCCCAATGTTAAGAAAATGCAATGGGTAATGTC
AGTAACAGGAATGATTCAAAACGAAAAAGACAAATGTTTATATGCttcaa
agaagagaaaaagaatATCTCTCAAAGATTGTGACAACTCCGATTTTAAT
CAGCATTGGAATTTTATGATTCGTGAACGGTTACGTCATCAAGCAACAAA
TCTATGCATCGAAAGGAAATCGGATGGCTCGTTACTCATAGCAAGATGTG
AAAATTTCAGTCCACAACAGACATGGTCTTTTACTACCAAATTTCTCTTC
TGAATTATTGGTGATAGAATGCTCACTTTATCTACCATTATTGAGAGTAG
AAAGTAAAACTTCTGGTGAAAAAGTAGAATATGTCGATTCTCCAACTGTT
ATGGTAGCAAATTTATGGTCAGAAAATAGTGTGAGATAAAAAGAAAGTAG
ATAGGCAAATCATGTGTTGCTGATGAAAGTACGTTTATTATACACGAACG
AAGACCTTTATGAATGAAGGAGTTTTTAGATGAAATTATTNataatgagg
aaggaaatattaaGTGGATAAGAGTAgagtagaaaatttttgaaaattga
ctgccaagatac

Run BLAST on NCBI

protein sequence of TCONS_00034878-protein

>TCONS_00034878-protein ID=TCONS_00034878-protein|Name=TCONS_00034878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
VWMDRYKRIFYRARGGNMNEPLPRIKERRLIRERLKCRPFDWYLMEVYPE
LRVPNVDELAYGEIKQIYKGQSYCLSESKTSKVLAVKCIPNVKKMQWVMS
VTGMIQNEKDKCLYASKKRKRISLKDCDNSDFNQHWNFMIRERLRHQATN
LCIERKSDGSLLIARCENFSPQQTWSFTTKFLF

Run BLAST on NCBI

transcript from alignment at sc0001229:25172..31458-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00034878 ID=TCONS_00034878|Name=TCONS_00034878|organism=Clytia hemisphaerica|type=transcript|length=6287bp|location=Sequence derived from alignment at sc0001229:25172..31458- (Clytia hemisphaerica)
AGTATGGATGGACCGTTATAAAAGAATATTCTATCGAGCACGTGGTGGAA
ATATGAACGAACCATTACCGAGGTAAAAATTATACAATTAGGAATTTTCA
GCAGCATTTTTTTCAGTAGACAGCATTAGCCTCGATTTTTGCTGTCCCTA
TCCTGATTCTTCATTACTCTTTTCCTAGACGGTATGTGGTACGTTCATTA
TAATGAGTTTCTTAGGGTTTATGAAATTTCGGTTTTCTTTTTTAGAATCA
AAGAACGACGTTTAATCAGAGAAAGACTGAAATGTCGTCCTTTCGATTGG
TATCTGATGGAAGTCTATCCAGAGTTGAGGTAACTTTTAGGTCTTCGTTT
TTATTAATTGATGGATATTTTTGTTTTGACTGAAAATTGTCTTTCGGTGC
ACCAAACGAAAAATAAATCTGCTGCTTGGATTGGTGGCTTTAGTTCCCCC
TTCTGTCAACACGCTACCGTCTCGAAATTATTTAGAACCAAGTATCATTT
ATTTCAGAGTTCCGAATGTTGACGAGTTGGCTTATGGGGAGATCAAGCAA
ATTTATAAGGGACAATCGTATTGCTTATCTGAGTCCAAAACTTCAAAGGT
TTTGGCAGTGAAATGTATTCCCAATGTTAAGAAAATGGTAAGACTTTTCA
TTGAAATTATTTTCTCCTGCTGACATGACAGATTGCGGGAATCGGGCGAT
CGAAGGCTTTTGAACTAAGCAATGAGACATCTGGTGGGATTTAAGGCCTT
TTTTATCTATTAATTTAGGTACAGACTATTTTTATCTTTAATTTTCAATT
CATACGTTATTAACTCTCATACTAGAATAATGCATAATCAAGTTGATGAT
CTTTAGTTATAAACAGTATTTTCGTAGCGTAAGATGCGTCTTTTCTTGCA
CTATATTACTTTTCGCATTTTTCAACTGTTTTTCTATCGTTTGTTCAAAT
TGTCAATTTCTTTTTCCAAATGGATAGCCATTTACCATGGCTTTTTGTGT
TGGCCGTGTTTCACACAGTTTCCAAGATTAGAGACACGACCTTTTATGAA
CGTAAGGTGACGTATCAGCAAAGTTGCGAGGCCAACTGATATCTTTAATA
TTGCCTAAGCATTCAATGTCCGCATTTTCATTTCATTCAATATCAAATTT
AATTGTCACTGTATCATTATACTGAATATTCGATAATCTTCCTTGATTGA
TGAAGAAAATGGCTCCAACACTACCACTCATGATGCATTCTCCATGGGGT
GTTTCGTAAAGCTTGAGAAACATTTGATCATAGGAACTTTTAGTAATATC
CCAGTCCACCAATATACCATTTACCAAAAGTCTCATTTTGATTGTTTTGA
ATTGCATTGGCCATTGGTTCGTGTCATCAAAAGGCCCCTTACTTATCCAC
AATGACACAGTAACGTGAGTCTTCTTCTCGGAAATTTGACGGCTGAAATT
CAAGCGCAGCAATGCTTTGTATGTACCAAAAACAAAGAAAGACGGTGATT
CTGTAACGGTGTTGAATTCTTTGAATTCCTGGAATTTCTGCTGTAGGTTG
GGTATAGTCCATACGAAAGTGCTTTGAAGGATTTTCTCACAACTTCTCAG
CTTTCTTTCTGCACAGTGATTTTCACTTTCACTCTTTTTTTCTCGTTGCT
GCATTTCGCTCTCATCATGTGATCTTTCTGTATCAACATTTTCAATTACA
GGTTTCGATCCAGTCTTGATCCTGTTGATCTTCTTTTTGCTTTTGAACAC
ATCAAATCCCATCCTATCTTTTATGGGCGACTGTATAGCTTTCTTTTTCC
CTATAATAAAAGGTTTTAAAATCTCTAACTTATGTTCACACATCTTTAGT
GGCTAATTCACTGGCCTACCATAATATCTTTATAATGCGCGTTATGAAAT
TTGCCTTACTTCATATCCCCCTCTCTAAATTCAAATAAATTGTCTAGAAC
CGAAAGACTGTCTTTTTCAAAATCTTTGCCCAACTTAGATTGATGTTTAT
TCGTTTTGGAACGACTAATTATGGATTCTATTTTTTTAAGGACGACTTTT
ATCAAAGATAAACAAGAAAGCTCTTACCTATTCTCTTTGTAAATTTGAAC
GGTCTTTTTTGTCTTTTCGTTTATTTCTTGATTTCTCTAACATTCATAAC
TCCTTTACTGAACTGAATTGATATATATGGTAGGAGTAGTCCTATACTCA
TCAAGTTAATGTAGTTTTCTTTTCCCTAATATGCAAAAACTACCCTAACC
ATATAAAAAATCAATAAAAATAGTAACTACCGGTTTGTTTATTTACTTAG
GAATAAATAGTTTGCTAATGTGTTATTTTCAAAATACCCACGATAAAGTA
ACAAAAATAAAACTCAGGGATAGTTCGTAGTGTATCACTTCAAGCCAGTC
CATAGTAACGGCAATTTGTAACACATTGTTGCGAAATCACCCTCACCATT
CACTGTTTGATTTCATTTTCCCCAATTCAAATTTTTGTAAATAAGGTATT
TTAAATTTTTTTAAAGAAATCATCTCGTTGCAGTGGCGTTCTGGGAAAAT
NGCATGATAGATTGTGGGAATCGAGGAACCTAAAAGCTTGTGAACTAGGC
AAAGAGATATATGCTGGAATTTGAGGCCTTTTTAATCTATTAATTTAGTT
ACAGACTATTGTTAACTTTAAGTTTCAATTCATACGTTATTAACTCTCAT
AGAATATTGTATTATGTATGACGATCTTCTGTTATAAACAGTATTTTCGT
AGCGTAAGATGCGTCTTTTCTTGCACTATTATTTTTCGCATTTTTTCAAC
TGTTTTTCTATCGTTTGTACAAATAGTCAATTTCATTTTCCAAATGGATA
GCTTTTTTTTCAACTTCCATTTACCATGGCTTTTTGTGTTGGCCGTGTTT
CCAGTAGTTTCCAAGATTAGAGACACGACCTTTTATGGACGTAAGATGAC
GTATCAGCAATGTTGCGAGGCCAACTGATATCTTTAATATTGCCTAAGCA
TTCAATGTCCGCATTTTCATTTCATTCGATATCAAATTTAATCGTCACTG
TATCATTATACTGAATATTCGATAATCTTCCTTGATTGATGAAGAAAATG
GCTCCAACACTACCACTTATGATGCATTCTCCATGGGGTTTTTCGTAAAG
CTTGAGAAACATTTGATCATAGGAACTTTTAATAATATCCCAGTCCACCA
ATATACCATTTAAACAAAAGTCTCATTTTGATTGTTTTGAATTGCATTGG
CCATTGGGTCGTGTCATCAAAAGGTCCCTTACTTATCCACAATGACACAG
TAACGTGAGTCTTCTTCTCGGAATTTTGACGGCTGAAATTCAAGTGCAGC
AATGCTTTGTATGTACCAAAAACAAAGAAAGACGGTGATTCTGTAACGGT
GTTGAATTCTTTGAATTCCTGAAATTTCTGCTGTAGGTTGGGTATAGTCC
ATACGAAAGTGCTTTGAAGGATTTTCTCACAACTTCTCAGCTCTCTTTCT
GCACAGTGATTTTCACTTTCACTCTTTCTTTGTCGTTGCTGCATTTCGCT
CTCATCATGTAATCTTTCTGTATCAACAATTTCAATTACAGGTTTCGATC
CAGTCTTGATCCTGTTGATCTTCTTTTTGCTTTTGAACACATAAAATCCC
ATCCTATGGTTGACTGTAGTATAGCTTTCTTCTTTCCTATAATGAAAGAT
TTTTAAGCCTCTAACTTACGTTCACACATCTTTTAGTGGCTAATACGCTG
GCCTACCATAATGTCTTTATAATTCGTTATGAAATTTGCCTTCCTTCATA
GACCTCCCTCTAAATTCAAATGAATTGTTTAGAACCGAAAGATTGTCTTT
TTCAAAATCTTTACTCAACCTAGATTGATGTTTATTCGTTTTGGAACGAC
TAATTATGGATTCTATTTTTTTAGGACGACTTTTATCAAAGATAAACAAG
AAAGCTCTTACCTATTCTCTTTGTAAATTTGAAAGGTCTTTTTTGTCTTT
TCGTTTATTTCTTGATTTCTCTAACATTCATAACTCCTTTACTGAACTGA
ATTGATATATATGGTAGGAGTAGTCCTATACTCATCAAGTTAATGTAGTT
TTCTTTTCCCTAATATGCAAAAAATACCCTAACCATATAAAAAATCAATA
AAAATAGTAACTACCGATTTGTTTATTTACTTAGGAATAAATAGTTTGCT
AATGTGTTATTTTCAAAATACCCACGATAAAGTAACAAAAATAAAACTCA
GGGACTTTGATAGTTCCCTAGTGTATCACTTCAAGCCAGTCCATAGTAAC
GACAATTTGTAACACATTGTTGCGAAATCACCCTCACCCTTCACTGTTTG
ATTTCATTTTTCCCAATTCAAATTTTTGTAAATAAGGTATTTTAAATTTT
TTTAAAGAAATCATCTCGTTGCAGTGGCGTTCTGGGAAGATTTTTCTGGA
GGGGCCAAAGTCAATTTTTTAGAATGGTGCCCCCAATCTTCCAAAGTGGT
GCCCCCACCCACCAGTTTTTAAACTTTTATTTGCCTAGGCATAATGAGGA
AGGAAATATTAAGTGGATAAGAGTAGAGTAGAAAATTTTTGAAAATTGAC
TGCCAAGATACCCTAAATTACTTAACAAAAATAGAAAAATTTGACACTTG
CTAGAGTGAAAAGAAACTTAAACAAATAATGCGAGCGAAGCGAACAGAAA
AATTTGATGTTTTTTTACTTCAATATTGTAATTAGATTTTCATTTGATAA
TGCTATAATGTACACACAAAAAACTTAGGTAGATTACAAAGAAGTTGCCA
ATTAACTTTATTGCAAGTGAATCAAAATCATTGCAAGTAATTTAAAATTA
TCTCAGTAAAATTGCTCCTGGGGCGCAACATAAAGTATGATTTTTAAGAT
TGGGGCGTTTCAATAATCTCTTTTGGCGCCCCTTGCTCTTCGGCGCCCCT
TCAAAAAAGGTCCGCTGGCCCCCACTGCCAGAATGCCACTGCTCCTGTAA
AAATTTGCGTGCTGGATAGTTCTATACCCTGGGAAAGTGTTTAGAGGGAC
AAATCAATTTTATTCCATAAACCCAAATTTTTAATTAATTTTGTCTCGAA
GCGCCTTTAAAAGGTTCCGTGTGATTGAAAATCTATATTGGACAGTTCAA
AAAACCAGTAGAACGATACATGAAACCATCGGAGAGGAGGGGCTTTTTGT
CTGGGTTACCATAGATCTGTTGTATTTTCAAGACCAACGATATTTTTGTA
TTTCACTTGCCAGCAATGGGTAATGTCAGTAACAGGAATGATTCAAAACG
AAAAAGACAAATGTTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTC
AAAGATTGTGACAACTCCGATTTTAATCAGGTAAAGTTGTTTTTTTGAAA
AAATTTATCCTTTTGAGCGAAAGGTATATCCCTCTAAATTTAAATTTGAG
TCGCAAAAATGGACATGGCAAAACTTGATTTTTAAAAATGCTGAAAAGGC
TAGTTCTTGACTACCGGTATTGAATCTCACGTATTTCACCAATCAATTTT
CTTGTGTCTATTGTTATTGAATCGGGAGTAACCTCGTGACTAAAAAGTAA
TACACGCCTTCTTCAGACATTTGAAATTGGACGCTAATTCTTCCAGTTAA
GTCCTCACACTTTATTGACCCACGTTTATTTTGCACAAGAGAGTATTTTT
CACATTGCCATCGTGTGTCAGCCTTCAAAATTACAGCAAGGAATTATACT
GACTATATGATAATTTGATGGTGTTCTTGAGTGACTCTGATAACTACAGG
GCTTTGTTTACATTTTTTTAACATTCAGCATTGGAATTTTATGATTCGTG
AACGGTTACGTCATCAAGCAACAAATCTATGCATCGAAAGGAAATCGGAT
GGCTCGTTACTCATAGCAAGATGTGAAAATTTCAGTCCACAACAGACATG
GTCTTTTACTACCAAATTTCTCTTCTGAATTATTGGTGATAGAATGCTCA
CTTTATCTACCATTATTGAGAGTAGAAAGTAAAACTTCTGGTGAAAAAGT
AGAATATGTCGATTCTCCAACTGTTATGGTAGCAAATTTATGGTCAGAAA
ATAGTGTGAGATAAAAAGAAAGTAGATAGGCAAATCATGTGTTGCTGATG
AAAGTACGTTTATTATACACGAACGAAGACCTTTATGAATGAAGGAGTTT
TTAGATGAAATTATTNATAATGAGGAAGGAAATATTAAGTGGATAAGAGT
AGAGTAGAAAATTTTTGAAAATTGACTGCCAAGATAC

Coding sequence (CDS) from alignment at sc0001229:25172..31458-

>TCONS_00034878 ID=TCONS_00034878|Name=TCONS_00034878|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at sc0001229:25172..31458- (Clytia hemisphaerica)
CATTGGAATTTTATGATTCGTGAACGGTTACGTCATCAAGCAACAAATCT
ATGCATCGAAAGGAAATCGGATGGCTCGTTACTCATAGCAAGATGTGAAA
ATTTCAGTCCACAACAGACATGGTCTTTTACTACCAAATTTCTCTTCTGA
CAATGGGTAATGTCAGTAACAGGAATGATTCAAAACGAAAAAGACAAATG
TTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTCAAAGATTGTGACA
ACTCCGATTTTAATCAGAGTTCCGAATGTTGACGAGTTGGCTTATGGGGA
GATCAAGCAAATTTATAAGGGACAATCGTATTGCTTATCTGAGTCCAAAA
CTTCAAAGGTTTTGGCAGTGAAATGTATTCCCAATGTTAAGAAAATGAAT
CAAAGAACGACGTTTAATCAGAGAAAGACTGAAATGTCGTCCTTTCGATT
GGTATCTGATGGAAGTCTATCCAGAGTTGAGGTATGGATGGACCGTTATA
AAAGAATATTCTATCGAGCACGTGGTGGAAATATGAACGAACCATTACCG
AGCATTGGAATTTTATGATTCGTGAACGGTTACGTCATCAAGCAACAAAT
CTATGCATCGAAAGGAAATCGGATGGCTCGTTACTCATAGCAAGATGTGA
AAATTTCAGTCCACAACAGACATGGTCTTTTACTACCAAATTTCTCTTCT
GACAATGGGTAATGTCAGTAACAGGAATGATTCAAAACGAAAAAGACAAA
TGTTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTCAAAGATTGTGA
CAACTCCGATTTTAATCAGAGTTCCGAATGTTGACGAGTTGGCTTATGGG
GAGATCAAGCAAATTTATAAGGGACAATCGTATTGCTTATCTGAGTCCAA
AACTTCAAAGGTTTTGGCAGTGAAATGTATTCCCAATGTTAAGAAAATGA
ATCAAAGAACGACGTTTAATCAGAGAAAGACTGAAATGTCGTCCTTTCGA
TTGGTATCTGATGGAAGTCTATCCAGAGTTGAGGTATGGATGGACCGTTA
TAAAAGAATATTCTATCGAGCACGTGGTGGAAATATGAACGAACCATTAC
CGAGCATTGGAATTTTATGATTCGTGAACGGTTACGTCATCAAGCAACAA
ATCTATGCATCGAAAGGAAATCGGATGGCTCGTTACTCATAGCAAGATGT
GAAAATTTCAGTCCACAACAGACATGGTCTTTTACTACCAAATTTCTCTT
CTGACAATGGGTAATGTCAGTAACAGGAATGATTCAAAACGAAAAAGACA
AATGTTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTCAAAGATTGT
GACAACTCCGATTTTAATCAGAGTTCCGAATGTTGACGAGTTGGCTTATG
GGGAGATCAAGCAAATTTATAAGGGACAATCGTATTGCTTATCTGAGTCC
AAAACTTCAAAGGTTTTGGCAGTGAAATGTATTCCCAATGTTAAGAAAAT
GAATCAAAGAACGACGTTTAATCAGAGAAAGACTGAAATGTCGTCCTTTC
GATTGGTATCTGATGGAAGTCTATCCAGAGTTGAGGTATGGATGGACCGT
TATAAAAGAATATTCTATCGAGCACGTGGTGGAAATATGAACGAACCATT
ACCGAGCATTGGAATTTTATGATTCGTGAACGGTTACGTCATCAAGCAAC
AAATCTATGCATCGAAAGGAAATCGGATGGCTCGTTACTCATAGCAAGAT
GTGAAAATTTCAGTCCACAACAGACATGGTCTTTTACTACCAAATTTCTC
TTCTGACAATGGGTAATGTCAGTAACAGGAATGATTCAAAACGAAAAAGA
CAAATGTTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTCAAAGATT
GTGACAACTCCGATTTTAATCAGAGTTCCGAATGTTGACGAGTTGGCTTA
TGGGGAGATCAAGCAAATTTATAAGGGACAATCGTATTGCTTATCTGAGT
CCAAAACTTCAAAGGTTTTGGCAGTGAAATGTATTCCCAATGTTAAGAAA
ATGAATCAAAGAACGACGTTTAATCAGAGAAAGACTGAAATGTCGTCCTT
TCGATTGGTATCTGATGGAAGTCTATCCAGAGTTGAGGTATGGATGGACC
GTTATAAAAGAATATTCTATCGAGCACGTGGTGGAAATATGAACGAACCA
TTACCGAGCATTGGAATTTTATGATTCGTGAACGGTTACGTCATCAAGCA
ACAAATCTATGCATCGAAAGGAAATCGGATGGCTCGTTACTCATAGCAAG
ATGTGAAAATTTCAGTCCACAACAGACATGGTCTTTTACTACCAAATTTC
TCTTCTGACAATGGGTAATGTCAGTAACAGGAATGATTCAAAACGAAAAA
GACAAATGTTTATATGCTTCAAAGAAGAGAAAAAGAATATCTCTCAAAGA
TTGTGACAACTCCGATTTTAATCAGAGTTCCGAATGTTGACGAGTTGGCT
TATGGGGAGATCAAGCAAATTTATAAGGGACAATCGTATTGCTTATCTGA
GTCCAAAACTTCAAAGGTTTTGGCAGTGAAATGTATTCCCAATGTTAAGA
AAATGAATCAAAGAACGACGTTTAATCAGAGAAAGACTGAAATGTCGTCC
TTTCGATTGGTATCTGATGGAAGTCTATCCAGAGTTGAGGTATGGATGGA
CCGTTATAAAAGAATATTCTATCGAGCACGTGGTGGAAATATGAACGAAC
CATTACCGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_020292	XLOC_020292	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00034878-protein	TCONS_00034878-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001229	supercontig	sc0001229:25172..31458 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133406	1.25416	0.625684	0	1.03925	0.136615	2.81641	3.08819	2.92951	3.1245	3.65934	1.52666	3.16653	3.53767	4.17968	4.4945	4.58379	4.51962	3.48639	3.06794	4.57659	3.74087	2.63776	3.50544	4.73795	5.31936	4.27457	2.71326	7.85546	6.88243

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000772	Ricin_B_lectin

Blast

[Close]

BLAST of TCONS_00034878 vs. Swiss-Prot (Human)
Match: GALT2 (Polypeptide N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=GALNT2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.633e-16
Identity = 59/186 (31.72%), Postives = 89/186 (47.85%), Query Frame = 2

Query:    2 VWMDRYKRIFYRARGGNMNEPLPXXXXXXXXXXXXXCRPFDWYLMEVYPELRVPNVDELAYGEIKQIYKGQSYC---LSESKTSKVLAVKCIPNVKKMQWVMSVTGMIQNEKDKCLYASKKR--KRISLKDCDNSDFNQHW-NFMIRERLRHQATNLCIERKS--DGSLLIARCENFSPQQTWSFT 535
            VWMD YK  +Y A     N P   I+ R  +R++L C+PF WYL  VYPELRVP+  ++A+G ++Q     + C   L       V   +C       +W ++    +++  D CL    +     I L+ C  +D  Q W       +LRH  +NLC++ ++   G L +  C     QQ W FT
Sbjct:  387 VWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQ----GTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKH-MDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQ-WKFT 566

The following BLAST results are available for this feature:

BLAST of TCONS_00034878 vs. Swiss-Prot (Human)

BLAST of TCONS_00034878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GALT2	2.633e-16	31.72	Polypeptide N-acetylgalactosaminyltransferase 2 OS...	[more]

You are here

TCONS_00034878 (transcript) - C. hemisphaerica