TCONS_00034878-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00034878-protein
Unique NameTCONS_00034878-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00034878-protein ID=TCONS_00034878-protein|Name=TCONS_00034878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
VWMDRYKRIFYRARGGNMNEPLPRIKERRLIRERLKCRPFDWYLMEVYPE
LRVPNVDELAYGEIKQIYKGQSYCLSESKTSKVLAVKCIPNVKKMQWVMS
VTGMIQNEKDKCLYASKKRKRISLKDCDNSDFNQHWNFMIRERLRHQATN
LCIERKSDGSLLIARCENFSPQQTWSFTTKFLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_020292XLOC_020292Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00034878TCONS_00034878Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000772Ricin B, lectin domainSMARTSM00458ricin_3coord: 61..178
e-value: 2.0E-6
score: 37.4
IPR000772Ricin B, lectin domainPFAMPF00652Ricin_B_lectincoord: 61..175
e-value: 7.8E-12
score: 45.4
IPR000772Ricin B, lectin domainPROSITEPS50231RICIN_B_LECTINcoord: 60..178
score: 14.982
IPR000772Ricin B, lectin domainSUPERFAMILY50370Ricin B-like lectinscoord: 67..178
NoneNo IPR availableGENE3D2.80.10.50coord: 16..179
e-value: 5.6E-17
score: 61.7
NoneNo IPR availableCDDcd00161RICINcoord: 66..177
e-value: 1.54536E-8
score: 48.2706

Blast
[Close]
BLAST of TCONS_00034878-protein vs. Swiss-Prot (Human)
Match: GALT2 (Polypeptide N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=GALNT2 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.301e-22
Identity = 59/186 (31.72%), Postives = 89/186 (47.85%), Query Frame = 0 
Query:    1 VWMDRYKRIFYRARGGNMNEPLPRIKERRLIRERLKCRPFDWYLMEVYPELRVPNVDELAYGEIKQIYKGQSYC---LSESKTSKVLAVKCIPNVKKMQWVMSVTGMIQNEKDKCLYASKKRKR--ISLKDCDNSDFNQHW-NFMIRERLRHQATNLCIERKS--DGSLLIARCENFSPQQTWSFT 178
            VWMD YK  +Y A     N P   I+ R  +R++L C+PF WYL  VYPELRVP+  ++A+G ++Q     + C   L       V   +C       +W ++    +++  D CL    +     I L+ C  +D  Q W       +LRH  +NLC++ ++   G L +  C     QQ W FT
Sbjct:  387 VWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFGALQQ----GTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKH-MDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQ-WKFT 566
The following BLAST results are available for this feature:
BLAST of TCONS_00034878-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GALT29.301e-2231.72Polypeptide N-acetylgalactosaminyltransferase 2 OS... [more]
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