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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00033098 ID=TCONS_00033098|Name=TCONS_00033098|organism=Clytia hemisphaerica|type=transcript|length=1745bpRun BLAST on NCBI protein sequence of TCONS_00033098-protein >TCONS_00033098-protein ID=TCONS_00033098-protein|Name=TCONS_00033098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp MAENTSGQQTPPKRPPAPNLNYQPETPPLSVKHHLEHLKALPASKVRWFFRun BLAST on NCBI transcript from alignment at sc0001021:22777..43852- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00033098 ID=TCONS_00033098|Name=TCONS_00033098|organism=Clytia hemisphaerica|type=transcript|length=21076bp|location=Sequence derived from alignment at sc0001021:22777..43852- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001021:22777..43852- >TCONS_00033098 ID=TCONS_00033098|Name=TCONS_00033098|organism=Clytia hemisphaerica|type=CDS|length=13950bp|location=Sequence derived from alignment at sc0001021:22777..43852- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00033098 vs. Swiss-Prot (Human)
Match: DDHD1 (Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=1 SV=2) HSP 1 Score: 277.715 bits (709), Expect = 6.213e-82 Identity = 152/416 (36.54%), Postives = 232/416 (55.77%), Query Frame = 1
Query: 244 SVKHHLEHLKALPASKVRWFFQEDKK-WIPFNGADSLKIEDVFRCLPHELQSPLCIP--SNVDPESISFPT---------------------------------------VKGSLYEIDILGRECRPIYWKE-NAVPIMRGTWFKGAMSGNWEPLSEKESHLIEEAHIQVVRSLGLGSPL-VSQTASPAHSNSIHSIKIGVNRVEWHDISEIYIISESTGSRLA----QKIGLSGAS----EIHRGYELECELDDDLAPIEHIIFLVHGMGQLYHGEGGIINSRKKFSSSAEKAERRYFKEYTSEGRIEFFPIEWRTKLKLDEGIIGKITPSNLGSLRKVINDTTLDVFYYTSPFYREEIIQALRREMNAVYLKFIERNPSFEKRNGKVSIIAHSLGSVIIHDVLTLWNSYLMKEK 1335
+ +H E + L +VRWF++EDKK W PF G DSL+IE FR L LQ+ P + D + + PT V+G LYE+D+ EC P+YW + + +P+MRG WF + G W+PL E+ES+LIE+ H+ R + + + S +++HS K+ N V+WH + E+Y+ S++T S++A QK+G S AS +HRGY E L+D + HI+F+VHG+GQ +G II + +A K E R+F + + +EF P+EWR+KL LD + ITP + LR ++N + +D+ YYTSP YR+E+++ L++E+N +Y F RNP FE++ GKVSI++HSLG VI +D++T WN + E+
Sbjct: 152 AARHRYEVVTELGPEEVRWFYKEDKKTWKPFIGYDSLRIELAFRTL---LQTTGARPQGGDRDGDHVCSPTGPASSSGEDDDEDRACGFCQSTTGHEPEMVELVNIEPVCVRGGLYEVDVTQGECYPVYWNQADKIPVMRGQWF---IDGTWQPLEEEESNLIEQEHLNCFRGQQMQENFDIEVSKSIDGKDAVHSFKLSRNHVDWHSVDEVYLYSDATTSKIARTVTQKLGFSKASSSGTRLHRGYVEEATLEDKPSQTTHIVFVVHGIGQKMD-QGRIIKNTAMMREAARKIEERHFSNHAT--HVEFLPVEWRSKLTLDGDTVDSITPDKVRGLRDMLNSSAMDIMYYTSPLYRDELVKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVITYDIMTGWNPVRLYEQ 558 The following BLAST results are available for this feature:
BLAST of TCONS_00033098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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