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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029646 ID=TCONS_00029646|Name=TCONS_00029646|organism=Clytia hemisphaerica|type=transcript|length=1527bp
TAAAAATTTGGTTTTCATGAGGAAACTCAGCAGAAAAAACGacaTGATTT
GTCAGATGTGTGTCCTTGGATAGGGAATGAATTTTAGTCATCAAGAGATA
AAAGCTGAGGTTGACAATGAAGTTTGGACATCTAAAAACTATGGTTTTCA
TTTTAAACAAGAAGCTGCCTTAGTTGATGGCGAATATAGATTTTCTACTT
GTGAACTGCAATATTCTTTAGATAGTAATGATGATagagaaaattccttt
tttgaaGAAGGATCAGCTTTAAATGATCCTGATCTTGAATGTGAGAATGA
AAAGAAATTGTGGAAATTAAAATTGAAGTAGAAGAAGAAGACTTTTATTT
ATCAAGCAATGGAAAAATACCAGCTTATGTTGATCAACCTTTCCGGGCTA
ACCATTGTCAATCTATTTCTGATGAACAGTAGAACTATGATTCAAAAGAG
GAAGAAAATTCTGTAGAGAAAAATTATGTTGCAGGAGGCAAAAAGCTatc
aaaaagcatcaaaactAATAAACAGGGCAAAAGTACTACACAACGATTGC
AATGTGATTTATGTAATGTTCtacttcaaatttaaaaaaccacAAACTAA
GAGAACATATTAATAAAggagaaaaatttatcaaatgtGAAAGTTGTGGT
AAAAGTTTTTCTGTAGAGAAGAGGGCAGACGATTCAAATGTAGTTGGAAA
TATTGTCAAATGTCTTTCAGTCAACTTTATGACCTAGAAGCTCATTTGAA
AGACGCACATGGAGGTTTTAAGTGTGTTTCTTGTGAAAAATCTTTCATGA
CAAAATCAGGTCTTATTACACGTCAGAAGGAGTTTCACAAAGATAGGTCT
AAATGTCAACATTGCGGTAAAGTACTAGCTACTgaagaaagccttaaaag
acATTCAACACGCCATCCCTGTCatcaagaaaaaagattttcatgcaTCA
AATGTGGAAAAGGCTTTACAACCAATTCCTCTTTAGCCCTCCATGATAAT
GAAATACATAAAATGATTGAAACTTTCAAATGTAGTATATATGCGGTAAA
GCTTATTTgggttattttcgaaaaatctcAGTATAAAAACCACATGAATT
CTCACAACAATGTTAAGCCATTAAAATGCGAAGAATGTGGTAAGCGCTTT
CAGCAAAAAACGTGATTTGAAGACACACACTGTGATTCTCGTAAAGGTCT
GAAACCATTTAAATGTGATATTTGTGGAAAGTGTTTTCCAAACGCCAGAA
ACTTACGAAGACATAGCAAAGCTTTACATACAGATATGGAGGTTTCCAGA
AAAGCTGATTTAGCCAGCGAAAACGACGAGGGCGAGGCGcttttaattta
aaattcttattcatcataacattttgaaagtaattcctttatttaaaagt
ttttatcaGATCATCTACTCCTCTACACACAGATACGGAAGGCGCAAAAA
AGATTAGTTAGTcaacatttttataataaaattttcatcaaaagttttaa
tCAAATTGTGTGCTCTTTTGAAGAATT Run BLAST on NCBI protein sequence of TCONS_00029646-protein >TCONS_00029646-protein ID=TCONS_00029646-protein|Name=TCONS_00029646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MSFSQLYDLEAHLKDAHGGFKCVSCEKSFMTKSGLITRQKEFHKDRSKCQ
HCGKVLATEESLKRHSTRHPCHQEKRFSCIKCGKGFTTNSSLALHDNEIH
KMIETFKCSIYAVKLIWVIFEKSQYKNHMNSHNNVKPLKCEECGKRFQQK
T Run BLAST on NCBI transcript from alignment at sc0000762:146567..152979+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029646 ID=TCONS_00029646|Name=TCONS_00029646|organism=Clytia hemisphaerica|type=transcript|length=6413bp|location=Sequence derived from alignment at sc0000762:146567..152979+ (Clytia hemisphaerica)
TAAAAATTTGGTTTTCATGAGGAAACTCAGCAGAAAAAACGGTAGGTGTA
AAGAAccccttttaatcataacttcttttcctcatgatgaatttttatga
aattttcagtagagatccataaaattatcattgatatcatgttcaaatat
aaGTCATTCTTTTTAAGGctgcaatcacaaatatcttcgttacgcgtcgc
ccgaccgactctcaaaaattgagtagaattgagtcggtaaatttgtctga
ctttttctgtcaatgacctttccttcgttcaaaaattttatttttgccga
GTTTTTCAAGCGATTTCTAGCATTcacagcattttgactttgtttatcat
tacatgcgccattttggggtcggaggtcacagtgtCCAAAGGTGATAATT
TTAAATCACCCAttacacgcggttgttttggctgctggctggctggcagt
ttcctccaGCAAGAATACACTcaaaaaatggatggaaaaatggaaacccg
aaaacttttagaccgaccgaccgaccgactggcatgggttgacccgggcg
aatgtttgttcacttgccaagtgaaccgttgtgatTGGGAATCGAAACCT
TGGTTGCCTGTACAGGACaattagtcacactagcgtcccgccaaaatgcg
tatcaaagattaatgctgcgaaagcgccatatcgtttacttgactcgcaa
gcaagaaattgcctaaaatttgagccatagatgaaaaagtttgagccaag
ccaaccttgaaaactaatttgaagatcaacttcccaagaaaaagatctac
ggGGGAGACAGAACCCACCTAGATCCGCGCATGGCCGGATAGGCTaactc
ccggaaattttgccggacctcaaacactgacccatttacatgtgcaaaat
cttttttactttagcgtataggCCTTAAAGATCAAAGCGCTGTCTCTGGA
ATTGAATgataaaatttggttggttgatattctggttACTGCACGTTCAC
AAtcagtcattttgtctcattttaagttttcaagtttttattaattgtct
tgggaacttgaacttgattcaggtaactctcatccttgttgtttcaaata
catcctgtagatgactgatgttgttttttctgaaagctagatttcctagt
gtgactaactgcaggaatcaaggttgatgtccactataccacaacgcctt
ctaaccttccacagtactgaAGTGCGCAACCTACCGTTTTCATGGTGGAg
gaggcgagactcctaaacggtgtattgtccaaaatgaccaaaaaaattga
ccctgtcaggccaaaaaaaaaagtagttttgtttccggaaatgcgggtga
cgaaaaaaaatctcacccgggcggccggaaaatattttttttttcaattt
tcctagaaaaactctaattgacgtgtacgaaaaaataatccaggttcgat
gtctctttacttgaaaaaacgaaattttaagaGGAAGCTGTACTCTTAGG
TAATTCTATTCACAACAACATAAAACAGGAAAGTAGattgcacaaaaaaa
aaagtttttttctatttgcggccgggtgagatatatttttttctaaaaaa
agctcacccggccgatttccggaaacaagactacttttttttttggcctc
aGGTCcgcatcttgaaaattagtaaattggGGACCCTGTATATACGAGAT
ATCTCTAGAGTTTGTCTAAATTAAAATAAAGGGACTCTGATCAGTGGCAC
GTCCCTGTGTTCTACCTAATTTTGCCAAAGTGCCCTCCCTCGCCCGGGCT
TCTACATGTGCGTTTGCATAGGGTAAAATTGCGAaatacgaaaattgatt
tttaaaaaaaaattttgaaaaatgaccctacaagatttgattatatcttt
ttattccatgaagagattactttcaaatcaaaaatatattgacaatgaat
gggtaagctttctactagaaatccaaacataaattgcatagcttttaggc
ggcaatcacaaatatcttcatttcgcgtcctcgttgggtctaaaaagtga
gttggtCGGTCAGTCGTAAAAAATTTCGGGTTTTCTTACCTcaatcatcc
atttttggagtgtattcttgaaggaaactaccagccagccagcagccaaa
acaatcGTGTGTGTTATGGGTGAtctcaaattatgacctttgaacactgt
gacctccgaccaaaatggcgcatgtaatgataaacaaagtcaaaatgctg
tgaatgcgctagaaatcactcgcaaaaaatcggcaataataaaatttttg
aatgaaggaaagaaaaagtctgacaaatttaccgactcaacgtctcaatt
ctactcaattttcaagAGTCGGTCGGGTGGcgcgaaacaaagatatttgt
gattgccgccttaccaaaaaatagcactttaggatcagaaacagtcaaaa
accagctttttccaattttcatcgagttacaggaattaattccttgtttg
ttttgttgatctgaaattttcagtaggggtggccaacatggttcccctgc
tcatatcagggggcccgagacgggggtaagagaactaaagtttctaagta
aaatcttaattatatcacctaaaaaagtgcatttttgtccatttctttta
aatagatagtcccagttccttatccctctttcagtaaagcttcccacaca
agttcgattaaaaaaattaatccaactctaagattttttaaaagattgtg
agtgttcgattaagttcgattaatggGTTTTGGTTCGATCAGTTtgataa
acaaattttgttcgacaagtttgtgctgctccgccagcatatattagctt
cttttaaAGCCAAATttggaatgtaaatcgggaaattacttccgataaca
gattacacacttttcctgtatccttttagcgccagaggcggtttgttggg
gcatagtattccgccactcTGCTGCGCacgaaatcgcaacagaggggcta
cggactttattccggatggatagacaaatatccgggtacaataaacgtca
agcggttaagtccgggaactgtcaaaatggcaatcgcgtgccaggacaaa
gtttttgcaagcgagggaagatatatgagaaccccttttttttttgaacC
AATCAAGCCTAATCAaacataataaaataaaattcaacgTAATCAAAGCA
ATCGAACGGTAAATCCTGGGTGATACAGGGTGATATTCTATTACAATTTG
ATTGCATTCAACAATCGAATGGCAattattcaattgcgttcaattcgcgt
tcaattgatttggcgtttgatttgttcgattgacaccatcTGGTTATAAA
CTAGGTTCGTCTTGCCTCTTTTCactttccctttacaacaatatgCTGAC
AAACAAGCTGACAGAACTTTCTTTGCACTGGTGCTGACCAAATCACCCTC
TCAACAGGGGAGTAGGTTGAAGTTTGTGTCTGTCACCTGCggcagatttt
tgaaaaaaagccttcaaatgttttTAGCTTAAATGTTTTTTCCAACTTCA
AGAGAATTCATTAAACTTGTGTTAGCGGCACGGCACGGCAATTTGAAATC
AAGTGACTACCCACTGTATAATGTACGGATCATAATACAATACAATAATA
TATAAATGTTATTACACAATTCTCAAGGTGATAAAAACTAAACTTATACA
CATGAGACAAAATAAATGACATAAAGGAAAGAATTATACTAAATCTACCT
ACAAAAGACCAATGAAATACAAAGTAATAATTGTAAGAACATCAAACAGt
tacacaaaagaaaaaatataaaatcaatgCCGAAACGGCATTAACAGTGG
TAATTTTCATGTAAGATGGGATAAGTATGGTGGTCAAAAGAGGTAACCAC
CGGACGCCCCACCAGACACCACTGCGCAGTGTAGGGCAGTGTCCAGGGTC
GTAAGcattcacttccacaataatttatgtaattacaCTCTCGGTCAGTC
AGGGTTCATCATAATACGCATGTTTTTAGTCACATGACTGAGGTACCTAC
TAAAAAACAATCCGGGGATAAGTGCCAAAGCAACACAGATTATTCTTAAA
GTAAAGAAGTATCATTttgcattgacaatcaaatataatatattacatTG
TGAATCTCCAAGCAATTTTTGGCTTTTGCTGGCAATCTGCCGGCACTTTT
TCCACACCATGTCACCCAGCAACTTGCCAGCTACTGTTATTACATTGTTG
GCATTAGAACCGCAATATGCCCGCAAAAACTAAAGCCGGCTAGTTGCCTG
CATCCGCCcatttgtaataattatgcattgccaagtTTGGCTCCCCATTG
TTCTTACTGTCAAGTAACTCCATAATTActtgaaaagttttttattcttc
ttaAATATACTAAATACTGTTAAAGGGGGTAATATAAGggtgaaaaatct
aaaatttctctgtcgcccaaccatggtgagCCACATAATTTTTTAGCCAC
CTCAATCTATTGCACGCCGGGGGCCATATAATTCCATGTTTCAATCTTAC
ATTGAAGACAAATCATActcttgaaagaaaaacattttgcatTATGGATC
CataatattttaagattttgcagGGACTTAATTTTGTGGATGGCACCATT
GGGAGACAATACTTTCCTATGATAACGTTATGAAGTGTCACAATAAtaaa
ctttttgttgaaaatttcattctttgtCTTTTGACGTGATTCCCAAAATC
CATAACACGTAAAATGATAATTAATTACTTTCTTAAGATTTGTTGTTGAA
GCCATTGTCATCATAAAAGTAAgaaagtccagcaaacaggatTTTTTTGC
AAGGTTTGCAAGGGCTAACCTTTTTTAGAATAAGTCTTTTGAGGAAGGAC
ATAAActtaacatttttctttttttagacaTGATTTGTCAGATGTGTGTC
CTTGGATAGGGAATGAATTTTAGTCATCAAGAGATAAAAGCTGAGGTTGA
CAATGAAGTTTGGACATCTAAAAACTATGGTTTTCATTTTAAACAAGAAG
CTGCCTTAGTTGATGGCGAATATAGATTTTCTACTTGTGAACTGCAATAT
TCTTTAGATAGTAATGATGATagagaaaattccttttttgaaGAAGGATC
AGCTTTAAATGATCCTGATCTTGAATGTGAGAATGAAAAGAAATTGTGGA
AATTAAAATTGAAGTAGAAGAAGAAGACTTTTATTTATCAAGCAATGGAA
AAATACCAGCTTATGTTGATCAACCTTTCCGGGCTAACCATTGTCAATCT
ATTTCTGATGAACAGTAGAACTATGATTCAAAAGAGGAAGAAAATTCTGT
AGAGAAAAATTATGTTGCAGGAGGCAAAAAGCTatcaaaaagcatcaaaa
ctAATAAACAGGGCAAAAGTACTACACAACGATTGCAATGTGATTTATGT
AATGTTCtacttcaaatttaaaaaaccacAAACTAAGAGAACATATTAAT
AAAggagaaaaatttatcaaatgtGAAAGTTGTGGTAAAAGTTTTTCTGT
AGAGAAGAGGGCAGACGATTCAAATGTAGTTGGAAATATTGTCAAATGTC
TTTCAGTCAACTTTATGACCTAGAAGCTCATTTGAAAGACGCACATGGAG
GTTTTAAGTGTGTTTCTTGTGAAAAATCTTTCATGACAAAATCAGGTCTT
ATTACACGTCAGAAGGAGTTTCACAAAGATAGGTCTAAATGTCAACATTG
CGGTAAAGTACTAGCTACTgaagaaagccttaaaagacATTCAACACGCC
ATCCCTGTCatcaagaaaaaagattttcatgcaTCAAATGTGGAAAAGGC
TTTACAACCAATTCCTCTTTAGCCCTCCATGATAATGAAATACATAAAAT
GATTGAAACTTTCAAATGTAGTATATATGCGGTAAAGCTTATTTgggtta
ttttcgaaaaatctcAGTATAAAAACCACATGAATTCTCACAACAATGTT
AAGCCATTAAAATGCGAAGAATGTGGTAAGCGCTTTCAGCAAAAAACGTG
ATTTGAAGACACACACTGTGATTCTCGTAAAGGTCTGAAACCATTTAAAT
GTGATATTTGTGGAAAGTGTTTTCCAAACGCCAGAAACTTACGAAGACAT
AGCAAAGCTTTACATACAGATATGGAGGTTTCCAGAAAAGCTGATTTAGC
CAGCGAAAACGACGAGGGCGAGGCGcttttaatttaaaattcttattcat
cataacattttgaaagtaattcctttatttaaaagtttttatcaGATCAT
CTACTCCTCTACACACAGATACGGAAGGCGCAAAAAAGATTAGTTAGTca
acatttttataataaaattttcatcaaaagttttaatCAAATTGTGTGCT
CTTTTGAAGAATT Coding sequence (CDS) from alignment at sc0000762:146567..152979+ >TCONS_00029646 ID=TCONS_00029646|Name=TCONS_00029646|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000762:146567..152979+ (Clytia hemisphaerica)
ATGTCTTTCAGTCAACTTTATGACCTAGAAGCTCATTTGAAAGACGCACA
TGGAGGTTTTAAGTGTGTTTCTTGTGAAAAATCTTTCATGACAAAATCAG
GTCTTATTACACGTCAGAAGGAGTTTCACAAAGATAGGTCTAAATGTCAA
CATTGCGGTAAAGTACTAGCTACTgaagaaagccttaaaagacATTCAAC
ACGCCATCCCTGTCatcaagaaaaaagattttcatgcaTCAAATGTGGAA
AAGGCTTTACAACCAATTCCTCTTTAGCCCTCCATGATAATGAAATACAT
AAAATGATTGAAACTTTCAAATGTAGTATATATGCGGTAAAGCTTATTTg
ggttattttcgaaaaatctcAGTATAAAAACCACATGAATTCTCACAACA
ATGTTAAGCCATTAAAATGCGAAGAATGTGGTAAGCGCTTTCAGCAAAAA
ACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029646-exon-sc0000762-1491911889:146567..146607 | TCONS_00029646-exon-sc0000762-1491911889:146567..146607 | Clytia hemisphaerica | exon |
| TCONS_00029646-exon-sc0000762-1510915933:146567..146607 | TCONS_00029646-exon-sc0000762-1510915933:146567..146607 | Clytia hemisphaerica | exon |
| TCONS_00029646-exon-sc0000762-1575043694:146567..146607 | TCONS_00029646-exon-sc0000762-1575043694:146567..146607 | Clytia hemisphaerica | exon |
| TCONS_00029646-exon-sc0000762-1491911889:151494..152979 | TCONS_00029646-exon-sc0000762-1491911889:151494..152979 | Clytia hemisphaerica | exon |
| TCONS_00029646-exon-sc0000762-1510915933:151494..152979 | TCONS_00029646-exon-sc0000762-1510915933:151494..152979 | Clytia hemisphaerica | exon |
| TCONS_00029646-exon-sc0000762-1575043694:151494..152979 | TCONS_00029646-exon-sc0000762-1575043694:151494..152979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000762 | supercontig | sc0000762:146567..152979 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00029646 vs. Swiss-Prot (Human)
Match: ZBT17 (Zinc finger and BTB domain-containing protein 17 OS=Homo sapiens GN=ZBTB17 PE=1 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.502e-22 Identity = 69/197 (35.03%), Postives = 92/197 (46.70%), Query Frame = 2
Query: 701 YCQMSFSQLYDLEAHLKD--AHGGFKCVSCEKSFMTKSGLITRQKEFHKDRSK--CQHCGKVLATEESLKRHSTRHPCHQEKRFSCIKCGKGFTTNSSLALHDNEIHKMIETFKCSIYAVKLIWVIFEKSQYKNHMNSHNNVKPLKCEECGKRFQQKT*FEDTHCDSRKGLKPFKCDICGKCFPNARNLRRHSKALH 1279
+C F+Q+ +L+AHLK A G KC C K F T SG + R H C HC + A +L+RH H EK C+ CGK FT SSL H + H + + C + + + SQ NH+ H+N++P KC C K F H G KP+ CD CG+ F NLR H K +H
Sbjct: 450 HCDKKFNQVGNLKAHLKIHIADGPLKCRECGKQFTT-SGNLKRHLRIHSGEKPYVCIHCQRQFADPGALQRHVRIH--TGEKPCQCVMCGKAFTQASSLIAHVRQ-HTGEKPYVCERCGKRFV----QSSQLANHIRHHDNIRPHKCSVCSKAFVNVGDL-SKHIIIHTGEKPYLCDKCGRGFNRVDNLRSHVKTVH 637 HSP 2 Score: 31.9574 bits (71), Expect = 3.502e-22 Identity = 14/31 (45.16%), Postives = 22/31 (70.97%), Query Frame = 3
Query: 570 STSNLKNHKLREHINKGEKFIKCESCGKSFS 662
++ NLK H+L ++ GEK +C+ CG+SFS
Sbjct: 401 TSGNLKRHQL---VHSGEKPYQCDYCGRSFS 428
The following BLAST results are available for this feature:
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