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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028993 ID=TCONS_00028993|Name=TCONS_00028993|organism=Clytia hemisphaerica|type=transcript|length=1051bp
CGTACAGAAAAAGATGTAAATGTggttaaagaatttcaaaagaCTAAATT
TTCTATAGCCAAAGATCCAAATATGGTAGCAATTCATGACCATCTTACAT
CTTATTCTGCTGACTTCGTTTGCAACGAGCTAGCTGCTTTCCCAAAAACG
TCGGAGCGTAAGAGCACTATCGACTCGTGTGATTGCCCATGTCAATGCAG
CTTCCATGCAGGCATATTTTCAAATCGCGCTCTTTGAAAGGATGTACACC
GATCTTTGCGAGTTTCGTTGGTCAAGAGCATATCTTCATCAAAGTCAGCG
GCTTTTTTTGGAATCGCACCTTAAAAGAACGCAAGCGATCGAAATTTCGT
CGCCCGATGGCTGTCATGAACCAAGTTGAACGATGTAGGAGTGCCAACGG
TGTATGTCAAAACCTTTCAAAATTGGCGTCGGAGGCAGGGGGTTCTGCTT
TCGTCGAAAGGATGAGACTTCTACAAAAGCTGGAAGATCTGTGGCGAGAC
GGAAAAGAGGCTCGCCTAATCTTTCCTCCAGATCGTGTCGAATCAGAAGT
ACATCTAAGAAACGAAACCTCAACTGGTCCTGATCTTCCAGATCGTGTCG
AATCAGAAGTACATCCAAGAAACGAAACCTCAACTGGTGCTGATCCACAA
TTCAAACATGAAAACACAATTGACGTGAGACATTTGAAGATGCCTTCAAG
AATAAAACCCAAAGGCCAAAAGGCTACACCAAGACAGTTATcggaaaaaa
tagaaaacgaaAGAATGATTCCAAAAGTAAAACTGACAGCTCCCCCAAAG
TCCCGAAAATTCAACTTGAGAGCTCAAACGATAAaagaaaaatgctgaaa
aatgtgGAAAAGTCACAGCCCAAGATATCTCGAAATCACTCGTTCCTTTT
GTAGGACTCAAACATCAATGGCACTATTATTGGTAACCCTGATAAGTTAG
CGGATCAGCTCTGGTAAGTAAAAAATGGGTaaaattgacgatttttgaaa
gtCGTATCCAACGGAAACGATCGATACCATCGGATAGAGcgtgaaattct
g Run BLAST on NCBI transcript from alignment at sc0000719:55317..57763+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028993 ID=TCONS_00028993|Name=TCONS_00028993|organism=Clytia hemisphaerica|type=transcript|length=2447bp|location=Sequence derived from alignment at sc0000719:55317..57763+ (Clytia hemisphaerica)
CGTACAGAAAAAGATGTAAATGTggttaaagaatttcaaaagaCTAAATT
TTCTATAGCCAAAGATCCAAATATGGTAGCAATTCATGACCATCTTACAT
CTTATTCTGCTGACTTCGTTTGCAACGAGCTAGCTGCTTTCCCAAAAACG
TCGGAGCGTAAGAGCACTATCGACTCGTGTGATTGCCCATGTCAATGCAG
CTTCCATGCAGGCATATTTTCAAATCGCGCTCTTTGAAAGGATGTACACC
GATCTTTGCGAGTTTCGTTGGTCAAGAGCATATCTTCATCAAAGTCAGCG
GCTTTTTTTGGAATCGCACCTTAAAAGAACGCAAGCGATCGAAATTTCGT
CGCCCGATGGCTGTCATGAACCAAGTTGAACGATGTAGGAGTGCCAACGG
TGTATGTCAAAACCTTTCAAAATTGGCGTCGGAGGCAGGGGGTTCTGCTT
TCGTCGAAAGGATGAGACTTCTACAAAAGCTGGAAGATCTGTGGCGAGAC
GGAAAAGAGGCTCGCCTAATCTTTCCTCCAGATCGTGTCGAATCAGAAGT
ACATCTAAGAAACGAAACCTCAACTGGTCCTGATCTTCCAGATCGTGTCG
AATCAGAAGTACATCCAAGAAACGAAACCTCAACTGGTGCTGATCCACAA
TTCAAACATGAAAACACAATTGACGTGAGACATTTGAAGATGCCTTCAAG
AATAAAACCCAAAGGCCAAAAGGCTACACCAAGACAGTTATcggaaaaaa
tagaaaacgaaAGAATGGTAAATTTAGTTGCATAGTAAACGAACCCATCC
CtcttcattaatttttatttttatatttatttaagaAATTTCAGCAGTGC
ATTTTCCAACTACCTGACAACAAGGAGAGCTTCCTGCTCAAGAATAATTA
CTTGTTAACCAGTCACCTTTTGCGATTAAGGATGGTTGATATACACTTTT
ATCTGAAacccaaattttcaaatcattgaTGAATTTGCTTAGGATTATCA
GGAATTCGACCTAAAGTTCCTAGTAATGCATGCCTATGGATTTTGAGCCA
ACAATGGCTGCAAGTTATCCAAAATTTAGACTTTTTACCTCGATTCTTGC
AATTATTTTTCTACGTTTTTAGATTCCAAAAGTAAAACTGACAGCTCCCC
CAAAGTCCCGAAAATTCAACTTGAGGTAAATCAAATGTTATCTTTATAGT
ACTTATGGCCTTCCTTTCTACCCGAACAACGTTTGCTTTAAGGATCCTTC
GAATATGTTGCGTGCCCTATTTCCTCCATTAAGCACCGCCCTATTTTAAC
AGCCGCCCTCTTATAATCACTGACCTCCAAAAACCGCCACTTATCAAACG
GTGCTTATTAGAAAATGATTgggaaatgatgaaatttttagtCATATCTC
TAATATCCGTCTCCAAAGTAAATTTACAAATTAATCTCATTACACCTTGA
CAGTAAAGATATGGTATGAAAAACCACCCATGTCAGACTGCAAAATCCAC
GATTCAATCAAATTGCACGTTAGGggcaaaattttccaattcagAAATAA
GCTATTAAGCGACGCCCTCTAATAAGCACCGCAcataaaatcatgaaaat
ttaataagcgCCACTGCGTAGGGGAAATACAGTATAGTTGTTGGGTAACA
TACAGCATACCAAACGTGATGCAATCAGGATTAGTTTTGAGATTATAGAT
GAAAATAgactgaaaatttttccaattttcatggGAAGTAgtctaattac
aaaaaatattgtttccaCATGTTAGCAAAAAGAGAGTGGATTTTAGTTTT
AGAATTAAGATGGAGACAGTTGAAAAAGAATTACATGGTGTTCTTACTTT
TCTTTTGCAGAGCTCAAACGATAAaagaaaaatgctgaaaaatgtgGAAA
AGTCACAGCCCAAGGTACTAAATCGTTCTTTTTGACCTTTTCCTCTCATT
GTACTAACGGTATCTTTTCCGCAGCTTTTTTCGGATAGAAGCTTCAAATT
TAAAATGGAGACAGTTGAAAAAGAATTACATGGTGTTCTTACTTTTCTTT
AGCAGAGCtcaaatgataaaagaaaaatgctgaaaaatgtgGAAATGTCA
CAGCCCAAGGTAGTAAATCGttctttttgacctttttctcTCATTGTACT
AACGGTATCTTTTTCGAAGCTTGTGCTCCTATTATTGCcaagaatttata
aaaattaccTATTTTAAAATGAAGTTCACAGGGTCAAGAAAATAAAAGGA
ATTTTCTACATCTTCCAAAGATATCTCGAAATCACTCGTTCCTTTTGTAG
GACTCAAACATCAATGGCACTATTATTGGTAACCCTGATAAGTTAGCGGA
TCAGCTCTGGTAAGTAAAAAATGGGTaaaattgacgatttttgaaagtCG
TATCCAACGGAAACGATCGATACCATCGGATAGAGcgtgaaattctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028993-exon-sc0000719-1491911889:55317..56083 | TCONS_00028993-exon-sc0000719-1491911889:55317..56083 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1510915933:55317..56083 | TCONS_00028993-exon-sc0000719-1510915933:55317..56083 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1575043694:55317..56083 | TCONS_00028993-exon-sc0000719-1575043694:55317..56083 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1491911889:56439..56491 | TCONS_00028993-exon-sc0000719-1491911889:56439..56491 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1510915933:56439..56491 | TCONS_00028993-exon-sc0000719-1510915933:56439..56491 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1575043694:56439..56491 | TCONS_00028993-exon-sc0000719-1575043694:56439..56491 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1491911889:57177..57230 | TCONS_00028993-exon-sc0000719-1491911889:57177..57230 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1510915933:57177..57230 | TCONS_00028993-exon-sc0000719-1510915933:57177..57230 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1575043694:57177..57230 | TCONS_00028993-exon-sc0000719-1575043694:57177..57230 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1491911889:57587..57763 | TCONS_00028993-exon-sc0000719-1491911889:57587..57763 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1510915933:57587..57763 | TCONS_00028993-exon-sc0000719-1510915933:57587..57763 | Clytia hemisphaerica | exon |
| TCONS_00028993-exon-sc0000719-1575043694:57587..57763 | TCONS_00028993-exon-sc0000719-1575043694:57587..57763 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000719 | supercontig | sc0000719:55317..57763 + |
Blast
The following BLAST results are available for this feature:
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