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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028434 ID=TCONS_00028434|Name=TCONS_00028434|organism=Clytia hemisphaerica|type=transcript|length=1940bp
tgtttaagtCACATCTGTGACCTTCTGGAACAAAGTTTTCTTGTTTTGGT
ACAAACACATTTGACACTATAAATACGACTTACTAAATCGATTATCAGTT
cattgtaatttaatgcgctatcGAACGAGCGTTCATTGACTTCCACGCCG
GGCGTAATGGAGAAGTTGATGATTAACCGAGAGTACGCAGGAGGTAGAAT
GATCAAGCTCAACAACGcaaaaaataatcatataaaTCAGGGTCGGTTGT
ACCGTAAATCTATTTTTCCATACGCAAGCTATATGACACCGTATCCTGCT
CCACCAATGGGTCTGCATCAACCGTATTTACCGCCACATCTAGCAGAGGA
TAATTACACAAATTGGCTACCACCTAAGATTCTACCGATCAACAAAGTCA
AGAACTTTCGGTCACCTCACAGCTCCCCGCCACAAATGAAAATGCACTCG
ATGAATTATAATTTTTCAAGAGAAGATGTTGATGCAGTGTTGTATGGATA
TGTAGGCGATCGTTGTGATCGACAGAAAACTTCACATTCACTTTCAGGAC
TTTGCACAAGTCCTACAAATGAATGTACATTTGAGCAAGATCTCATTCTT
CCAAAAACATTGGTGATGAAAAGGCTTCACATTGGACCAATATCTCATAA
AGGAATCTTTGCAAGTGAAGCAATAAAAAAGGGCACCACGTATGGACCAT
TTAAAGGTAAAATAATAAGGGCCAACAATAGCCATGAAATAAATCTCGAA
AATTCTTGGGAAGTTTTCAACAAAGATGGTAGCCTCCTTCACTACATTTG
TCCAACACGTGACAATTCATGCTGGATGAAATTCGTCAATTCAGCTCGAT
ATGCAAAAGAACAAAATTTGTCAGTTTTACAAAGAGGAGATCAACTTTAT
TATGAAGTCATAGAAGATATTCAACCAGATACAGAACTTTTGGTATGGTA
CGGTGAAACATATTTCAATTACATGGGTTTTCCAATGGCAATAAAATCGA
GCACAACAACAAGCATACCTCGCAAGCAATTTTCTCCGCCTGCAGATAGA
GAAATGGAGAAGGAATCAGCTTTGATAGGCAAAAGCGGGAAGTTTTCCAT
GCAATCGAtgtggaaaaattttctcttaCGAATATTACcgtgaaaaacat
ttgaaatataCACGTTGTGTGGACAAAGGAGATCGAAAATTCCCTTGCCA
TCTATGTCAGCGATCATTCGAGAAGAAAGATCGACTTAGAATCCATATTT
TACACGTCCATCAAAAATATCGAcctcatgtttgtaaaatttGTGGTAAA
CGATTTTCACAGTCAAGCAGTTTGAATAAGCATTCTCGAGTACATACCGG
GGAACGACCGTATGCCTGTCCGCATTGTCCGAAGTCGTTTACCGCATCCT
CAATATTGCGGACGCATTTGAGACAGCACAATGGTGAACGGCCGTTCAAA
TGTAAATTTTGCGGGAAAGCATTTGCGTCACACGCGGCGCACGATAGCCA
CGTCCGACGGACACACGAGAAATTAAAGACATTTTCATGTGGAGTGTGTT
CTAAAACTTTCTCCATGGAGTTCGaattaaaatttcatttgagtACCCAC
ACTCATCATGAACTAGCTGGGAATTTCATTAATGGTGGTACACAAAGGAG
CCGTTCGTATTCAGAAGAAAGTGAAAGCTCATTAATCATAGACATTGAAA
ATGAAGTAGATTTGTAATCTAGTTAATTCatgcttgatttaaaaattatt
ttataaataaGTAATACTTTAGATTGGAGTGAATTaatcaaattttgaat
gttaaaatttctgatagaaatataatatatattcaCTAAACAGAATCATT
TGATTCAGAGAGCTCTGATCTTCGGATATTATGATCTTCTATTGATCGAG
GGGAGCTCACATGCTAAGAGAAAACACTCCCAAAAACCAC Run BLAST on NCBI transcript from alignment at sc0000678:51414..57179- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028434 ID=TCONS_00028434|Name=TCONS_00028434|organism=Clytia hemisphaerica|type=transcript|length=5766bp|location=Sequence derived from alignment at sc0000678:51414..57179- (Clytia hemisphaerica)
TGTTTAAGTCACATCTGTGACCTTCTGGAACAAAGTTTTCTTGTTTTGGT
ACAAACACATTTGACACTATAAATACGACTTACTAAATCGATTATCAGTT
CATTGTAATTTAATGCGCTATCGAACGAGCGTTCATTGACTTCCACGCCG
GGCGTAATGGAGAAGTTGATGATTAACCGAGAGTACGCAGGAGGTAGAAT
GATCAAGCTCAACAACGCAAAAAATAATCATATAAATCAGGGTCGGTTGT
ACCGTAAATCTATTTTTCCATACGCAAGCTATATGACACCGTATCCTGCT
CCACCAATGGGTCTGCATCAACCGTATTTACCGCCACATCTAGCAGAGGA
TAATTACACAAATTGGCTACCACCTAAGATTCTACCGATCAACAAAGTCA
AGAACTTTCGGTCACCTCACAGCTCCCCGCCACAAATGAAAATGCACTCG
ATGAATTATAATTTTTCAAGAGAAGATGTTGATGCAGTGTTGTATGGATA
TGTAGGCGATCGTTGTGATCGACAGAAAACTTCACATTCACTTTCAGGAC
TTTGCACAAGTCCTACAAATGGTAAGCTATCTTATTATGATTTATATATT
GTCAACAGAATCCTTTCCATAAAATTTCATGCCACTGCACGATTTTTGAA
AGAACAAACTATGTAATAACAATTTGATTGCCAAAATACCAAGAGCAAGT
TAATAATATTTTAAGACTTTGCAGACCTTATAAGGAAAATTGATAAAAAT
ACCTAAAAAAATTTGAAAATATAAACAGATGAAATTTGGCCAAATTTGAC
TATACATGTTGACCCTTTTAGTCTAATAAAACTTACCCTTTAGAGTCACA
CCTAAAAATTAATTGATTACCCCTAGCGTTTCTCCGTTAGCCGTGGTTAG
CTAATGGCAGGACCATTGGTATGATCAAGTACTTATGTCTCCAAACCTTG
GATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGG
GGGGGGGGGGGGCACTCAGGCAAAATTGGGTACTGGTCGTGCCGCTGGTC
AGGGTCCCTTTTTAAGCTCTAAAGATATCTGATAGAGTCCCAAAGCTACT
AATTTTCAAGATGTGTTTCTGACAGGGTCCAATTTTGGTTATTTGGACAA
TTTTTCATGGTAAAAGTTTAATTTTTTCGTCTACTTTTAGTCATTTTTGC
CACTTGTTAGGGTGGAAAATGGAAAGATTTTCAATTTTTCGTTCTGACAA
GGTTACCATTTTACCAAAAATTCATATCTGACATTGTCAACTTTTCAAAC
TCCAGCGGCACGTCCTCGTCGGTCGTCAAGGTCAGTGCCCCCCTCCCCGA
GGTTTTGACATCTCATTTCTAATTGCTTTTTAGAATGTACATTTGAGCAA
GATCTCATTCTTCCAAAAACATTGGTGATGAAAAGGCTTCACATTGGACC
AATATCTCATAAAGGTATGAAAAGTTTTTACAAATAAAATAATTCGTCAC
AAAGCTCAGTTGTGAGTATCATTCCTGGTGTCGGTTTCGTGTAGGTATTT
TGGATTTCCATTTAAATAGACCTTTTCATAAATTACGTTGCGAACATCAC
TTGCCTCGCTTTGAAATTATTACCAAGATGATTAACTCTCAGCGGATTTT
ATTGAAACTACTTTCTATTCATAAAAAAATCATTTAATGTCTCAAGGGAC
ATAATCACCATTGTTTGAATACGAGGTAAGTGATGTCCGTGATGCAATTT
ATGAAAAGGTCTGTAGTTCTAATTCCTAAACGAAACCTTCGGGGGAAGCT
TTACATCGAGGGGCAAATCACTCGTAAAATGGTGTACGAGATTTATTTTT
GATTTATTTTTGATTTATGATTTATTTTCGATTTATTTTTGATTTATGAT
TTATTTTTGATTTATTTTTGATTTATGATTTATTTTTGATTTATTTTTGA
TTTATGATTTATTTATGATTTATTTTTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAATCATTTATTTTTGAAAAAATAAAAAAAGTTGAAAAGT
CAATTTTTTTTCGAAAGATTTTTTATTTATTTTTTATTTATTTATGATTT
ATTTTTGATTTATTGATTTATTTCTGATTTATTTATGATTTATTTTTGAT
TTATTGATTTATTTATGATTTATTTTTTATTTATTGATTTATTTCTGATT
TATTTTTGATTTATGATTTATTTCTGATTTGTTTTTGATTTATGATTTAT
TTCTGATTTATTTTTGATTTATGATTTATTTTTGATTTATTTTTGATTTA
TAAAATTGTGTACGAGATTTATTTTAGTGATTTGCCCCTCGCTTTACATG
ATGATAAATTGGAAAAGCATTTCATTCTGTAATCCTTTTAAGACTGATGA
CGGATATACCCGACATGGAATGTCGAGAAGTGACGCCCTGTTTAAATATT
AGAATTCCAAAATTCGAATAACATTAACGATTTTGGTTCAATAGTGAAAA
ATTTGAAATTTTGTTGAATGTATTTCTTATGTTCTGATCTACCTCAGGAA
TCTTTGCAAGTGAAGCAATAAAAAAGGGCACCACGTATGGACCATTTAAA
GGTAAAATAATAAGGGCCAACAATAGCCATGAAATAAATCTCGAAAATTC
TTGGGAAGTTTTCAACAAAGATGGTAGCCTCCTTCACTACATTTGTCCAA
CACGTGACAATTCATGCTGGATGAAATTCGTCAATTCAGCTCGATATGCA
AAAGAACAAAATTTGTCAGTTTTACAAAGAGGAGATCAACTTTATTATGA
AGTCATAGAAGATATTCAACCAGATACAGAACTTTTGGTATGGTACGGTG
AAACATATTTCAATTACATGGGTTTTCCAATGGCAATAAAATCGAGCACA
ACAACAAGCATACCTCGCAAGCAATTTTCTCCGCCTGCAGATAGAGAAAT
GGAGAAGGAATCAGCTTTGATAGGTAAAATTATTCATTTCTCTTTTTAAA
GTACATAGAAATAATATTTCCAATTTTGGTTTGAGCCTATTTCATAGGAT
ACGTGTTTTCATGAAAATATAAACGACTGGACATCCATCTCCTTTGTAGT
TTTGAAGATAACACTGCTAGCTTCGTTGCCGCCTCGTTAAATGATCAAAT
GAAACAATAAATTTTGATGATATACCTCTTGGGAATACCTTGCTAACAAC
GTCAAAACTTCGACAAAAGTCTCTGTTGTTCTACTTTTCTCAAGTCTTTT
ATCTATATCATAACAAAGATAACAGAGGCAAAATCATCGTCAGTTTGTCA
AAACTCCGACTAATATTTTCAAATCTTGACTTGAAAGTGTCTAATGATTT
TAGAGAGTGTCACATTCTAATTTCGATATTCTTATGACACAGGCTCTCAA
CTTTGGCAAGCTATTTTTTTCAAGTCATAAAAAAAATTATTGGAGTTACA
AAAGGGATTCAAAAGTATACACGCAGTTGAAATTCTGCATTTCAGAGTTG
AAAATGTTGATAAAATATATTGCAAACTCGTGAAAAAATTGAAAATAATT
TTTTTGTGCATTAGAAGTAATGTTCAAGCTCGATCAATCATTTTACCTAA
ACAATTCAAAGAAATAAAATTATGACGGAATATTGTCGGATTTTTTATAC
CAATTTTGAACTACAGGCGGCAACGAAGCTCGCTTCAAAGAGAACAATAA
AAGATAGATGTCCAGTCGTTTATATGTTCATGGTGTTTTGAAGACAAGAT
ATTTTTCTACGAGTACATCATTGCAGTTATCAACTTTTTATGCTTGAACA
TACTCTTTTGCGAACTGATACTAAAAGTTTTACAAAGGCAACAACAATAG
AAACGAGTTCATGAATTCAAATGTCAATTGAATAATAACAACAAATCAAT
TGTTTTCAATGTCTTTCTTAAGGAAAATCTGCACCGATTTGTGCATTTCC
CCCCTTTAAATGGAATCGAAAAAAGCATGTAACAAATGCACAAATCCTAT
TAAATCTGTGACTAAAAGCGAGAGTATACACCTTTTCGACCGTAGCCACC
AATGGCCACGTTGGTATCTTTTTGTCCGCTTTATCCCACTAAAACCGTCC
CAGTCCTTTTTTCGCACCAATAGACAATAGAAAAATGCGACAAAAAAGGT
TTGGGACGGTTTTAGTGGGATAAGGCGGGCAAAAAAATGCCCGCGTGACT
ACGGTCGAAAAGGTGTATTACATCTTGAGCTTACTTTAAAATACGAGCTG
CGATTGTGAAAGTATACTGTACTTATCCAAAACAATCCAAAAGTTCCTTA
AAAATCAAAAGAAACAGAATAAAAAATGCCGGTTTTTGTTGAGGTGCTCA
CCATCAAAAGCGCCAAAATCATCGCAAAAGTTTGGATAGTTCTGTGGTAT
AGCCTATTTTCACGGCCACAAATGAATACGACGTCACCTGGCCCTTGCAC
CCATTCTCCTTGTGAAGTAACTGTTGGGATTTGTATACTTTAGGTGAACA
AACTTTCGCGAGCAGAAACTTTTGCGATTTTCGCGAATTTTGGCCTTTTT
CGCAAAAGTTTATGCTCGCGAAAAACTCTTTAGAAAATTGAAAATCGTAA
TAAATATAAAATTTTCAGCATATTTCTAGACTTTAATGCCTTTTTAAAGT
CAAAGAACAACCATTTTTATCGGATTCAAGGAACATTAGTCACTCTTTCG
CCAATTTTCGTTTAAAAATTTTCATTTTTATCCTAATTTCTTTTTCATTT
AGAGGCAAAAGCGGGAAGTTTTCCATGCAATCGATGTGGAAAAATTTTCT
CTTACGAATATTACCGTGAAAAACATTTGAAATATACACGTTGTGTGGAC
AAAGGAGATCGAAAATTCCCTTGCCATCTATGTCAGCGATCATTCGAGAA
GAAAGATCGACTTAGAATCCATATTTTACACGTCCATCAAAAATATCGAC
CTCATGTTTGTAAAATTTGTGGTAAACGATTTTCACAGTCAAGCAGTTTG
AATAAGCATTCTCGAGTACATACCGGGGAACGACCGTATGCCTGTCCGCA
TTGTCCGAAGTCGTTTACCGCATCCTCAATATTGCGGACGCATTTGAGAC
AGCACAATGGTGAACGGCCGTTCAAATGTAAATTTTGCGGGAAAGCATTT
GCGTCACACGCGGCGCACGATAGCCACGTCCGACGGACACACGAGAAATT
AAAGACATTTTCATGTGGAGTGTGTTCTAAAACTTTCTCCATGGAGTTCG
AATTAAAATTTCATTTGAGTACCCACACTCATCATGAACTAGCTGGGAAT
TTCATTAATGGTGGTACACAAAGGAGCCGTTCGTATTCAGAAGAAAGTGA
AAGCTCATTAATCATAGACATTGAAAATGAAGTAGATTTGTAATCTAGTT
AATTCATGCTTGATTTAAAAATTATTTTATAAATAAGTAATACTTTAGAT
TGGAGTGAATTAATCAAATTTTGAATGTTAAAATTTCTGATAGAAATATA
ATATATATTCACTAAACAGAATCATTTGATTCAGAGAGCTCTGATCTTCG
GATATTATGATCTTCTATTGATCGAGGGGAGCTCACATGCTAAGAGAAAA
CACTCCCAAAAACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028434-exon-sc0000678-1575043694:56609..57179 | TCONS_00028434-exon-sc0000678-1575043694:56609..57179 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1575043694:55616..55696 | TCONS_00028434-exon-sc0000678-1575043694:55616..55696 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1575043694:54057..54482 | TCONS_00028434-exon-sc0000678-1575043694:54057..54482 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1575043694:51414..52275 | TCONS_00028434-exon-sc0000678-1575043694:51414..52275 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1510915933:56609..57179 | TCONS_00028434-exon-sc0000678-1510915933:56609..57179 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1510915933:55616..55696 | TCONS_00028434-exon-sc0000678-1510915933:55616..55696 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1510915933:54057..54482 | TCONS_00028434-exon-sc0000678-1510915933:54057..54482 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1510915933:51414..52275 | TCONS_00028434-exon-sc0000678-1510915933:51414..52275 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1491911889:56609..57179 | TCONS_00028434-exon-sc0000678-1491911889:56609..57179 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1491911889:55616..55696 | TCONS_00028434-exon-sc0000678-1491911889:55616..55696 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1491911889:54057..54482 | TCONS_00028434-exon-sc0000678-1491911889:54057..54482 | Clytia hemisphaerica | exon |
| TCONS_00028434-exon-sc0000678-1491911889:51414..52275 | TCONS_00028434-exon-sc0000678-1491911889:51414..52275 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000678 | supercontig | sc0000678:51414..57179 - |
Blast
BLAST of TCONS_00028434 vs. Swiss-Prot (Human)
Match: PRD14 (PR domain zinc finger protein 14 OS=Homo sapiens GN=PRDM14 PE=1 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 1.293e-96 Identity = 119/175 (68.00%), Postives = 143/175 (81.71%), Query Frame = 2
Query: 1085 AGSFPCNRCGKIFSYEYYREKHLKYTRCVDKGDRKFPCHLCQRSFEKKDRLRIHILHVHQKYRPHVCKICGKRFSQSSSLNKHSRVHTGERPYACPHCPKSFTASSILRTHLRQHNGERPFKCKFCGKAFASHAAHDSHVRRTHEKLKTFSCGVCSKTFSMEFELKFHLSTHTHH 1609
A + C RCGK+F+Y+YYR+KHLKYT CVDKGDRKFPC LC+RSFEK+DRLRIHILHVH+K+RPH C CGK FSQSSSLNKH RVH+G+RPY C +C K FTASSILRTH+RQH+GE+PFKCK+CGK+FASHAAHDSHVRR+H++ SC +C K FS + H+ H +
Sbjct: 397 AEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGDRKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPYQCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCSICGKIFSDQETFYSHMKFHEDY 571 HSP 2 Score: 122.479 bits (306), Expect = 1.293e-96 Identity = 72/210 (34.29%), Postives = 112/210 (53.33%), Query Frame = 1
Query: 457 YNFSREDVDAVLYGYVGDRCDRQKTSHSLSGLCTSPTNEC------TFEQD-LILPKTLVMKRLHIGPISHKGIFASEAIKKGTTYGPFKGKIIRANNSHEINLENS--WEVFNKDGSLLHYICPTRDNSCWMKFVNSARYAKEQNLSVLQRGDQLYYEVIEDIQPDTELLVWYGETYFNYMGFPMAIKSSTTTSIPRKQFSPPADREME 1059
+ F+ ED+ VLYG H++SGL P + T ++D L LP+ L + + G + H G+F S I KG +GPF+GK++ A+ +NS WE+F +DG L H+I WM +VN AR+ KEQNL +Q ++YE ++I + ELLVWYG+ Y ++ P++++ + P KQ S P++ E
Sbjct: 195 FQFTEEDLHFVLYGVTPSLEHPASLHHAISGLLVPPDSSGSDSLPQTLDKDSLQLPEGLCLMQTVFGEVPHFGVFCSSFIAKGVRFGPFQGKVVNASEVKTYG-DNSVMWEIF-EDGHLSHFIDGKGGTGNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQELLVWYGDCYEKFLDIPVSLQ----VTEPGKQPSGPSEESAE 398
The following BLAST results are available for this feature:
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