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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028190 ID=TCONS_00028190|Name=TCONS_00028190|organism=Clytia hemisphaerica|type=transcript|length=2448bp
GCCCACTCTTTCAATAATTAGAggtaaaatagtttttaaaatGGGGTTAT
CTGATTTATTGATCAATCTTATTGATATATAATGAAACATGATGAGCAAT
CATATGATGAATCATTTTTGGCTAAACTAGTCTCGAGTGAAGAGTGCAGA
GTTTACAAATTTACATAAAATCTAAACTGGCCAATCAGTTAACTGGTTAA
ATCAGACTtgagtttaaaaaaaagGATCACACAGTACATTCAAAATGGAC
CAATCCAAGATCCTTCTCATTGCTCTTGTTGCTCTTGTTTTAACTTCTAC
CGCGCATGCGCAATGCCCTGACTCGTGCATCTGTGGAAGTAATAACATCA
CTCGATGTTCCCATAAAACTTTATCCATCATCGAAACATCGAAGATACCC
AAATCAACAGTTCAGCTCTACTATAGTGATAATTTCATAACCAGTATCGA
CAAAAATGATTTTGCAGGACTGACTAATTTGCATACTCTTCAGTTACAGC
AAAACCAAATTTCTAATATTGAAGATGGTAGTTTCCAAGATCTTCTGAAT
CTCAAAATGTTGATTTTAAGTGACAACAATTTGAAGTCGATTACCAAAGA
TACATTTAAAGGACTTTCAAACCTGGAACATTTGATGTTGAATGGCCAAA
AAAATCAACTTGAGATTGAAGACAACGCTTTTGTGCACAACCCTAATCTA
TTAACACTTATGCTTACTGGAAATAAAATTCCAACCCTAAGGAACACTGT
TTTCAACGGCTTAACTAAACTAAAAAACTTGTATTTCGACCTCGACAAGA
TTACTCACATCGAGGAAAATGTCTTCAAGAGTATCCCCAAAGGAGTCACA
ATGGAAAACACTGGTAGAAAAGGAGTAGCTAGTCCCAATGGTTGTTGCTG
TAGAAGAGCGAGAGCTTTAGCTGGAACAAAGTTTGAAACACTttgctcaa
taaatcaatgtaGCTCCGCTGGTGCATGCAAAGAGGTGAAACCATCTTCA
TCTACCACACAACACCCAAAGACAACAACTCCAGTCCAACCATCTCCTCA
AACTTCATCATCTGCTAATTTAGTTAAACCTTCAAGCTCCGAAGTTACCG
CTCCAAAGATAACATCTTCATCAAATTCTCAGCCAACATCAACCATTAAT
CCACaaaagagctcatcaaaaacGATGGTAAAACCCTCAAGCTCCGAAGT
TACTGCTCCAAAGATAACATCGTCATTGAATGCACAGCCAACATCAACCA
TTAAACCACAAATGAGCTCATCGCATACGATGATAAAACCCTCAAGCTCT
GCAGGAACTAAACCTGAACCAACCTCATCTCTAAATCCTCAACCCGCATC
CACTTCGCAATATCAAAAGACTTCCACAATCAAACAAGCTAAACCATCAT
CATCTTCGATCGAACCGGAAATAGAAGCATCGATCACCACCATGCAACCT
TCACAATCAACAGCACCAGTAAATATAATTCATTCATCAAGCTCAGCAAC
CGTCGAATCATTAACCTCATATTTTCGCCAGGAGCAATCCAGTGCAGCAA
TCGTCATTAAACCGTCTCGAACCCCATCAATGGGATATTCAATGGAAAGC
CTCTCAGCGTCATCACAAACACAAGCATCAATGTCACCAAGCACCTATCT
ATCACAATCTCCATCTGTTTCCAAAGAATCAAGCCATGTCATGTCTTTGC
CATCACTTTCAACAAGTATCAAACCATCATCAACATTAGGCGAATCGATG
TTCTCTTCCTCGAGTTTGATTTCTGAATCCATTGATAAATCCTATTCAGC
GATGCAATCAACTAACCTACCATCTTCAAGCTCCTCCATTTCGATCAAAA
GTGCTTCAATTTCACTCAACGAATCATCCGTGAAAACCTCCCAAATGCTC
TCACAATCAAGATCATTAACACCTTCAGCCTCACCAAGCAGTTCCTACCA
AACATCAATGTCATCCACGACAATAATCATTACCTCTGCATCAGAATCCC
CAGATTCTCAAGAAGAGTCGTCTACTCAAACACCTTACATCTCCAAAATG
ATGTCATCAATGAAACCTACTCGGACATCAGCAACACCAGCTCCTGAAAC
AGAACCTAACACTATCACACCAAGCTCATCTTCGGTACAACAGCAGGCCA
GCTCTTCAGTTCAAGGCAATGCCGTTCAAACAaacttttcaatcaaaata
ttaATTACTATGCTGATTGTATTTGTAGctgttttgttttaaatagaTTA
ATACTTGTATCTTGTATTTGTTAAAATTATTGTAAGATAGACACTTTTGA
AAAATGCGTTTGATTTTCGGACTGAAGATCACCGGCAGAACCTCTTTAGA
AAACTATATATGGGAAATATACTGATTacattcttcttttcttttcaaaa
ttttacttgCAATGAAGCTTACTttgcttaaccctttaagtgccaatg Run BLAST on NCBI protein sequence of TCONS_00028190-protein >TCONS_00028190-protein ID=TCONS_00028190-protein|Name=TCONS_00028190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
MDQSKILLIALVALVLTSTAHAQCPDSCICGSNNITRCSHKTLSIIETSK
IPKSTVQLYYSDNFITSIDKNDFAGLTNLHTLQLQQNQISNIEDGSFQDL
LNLKMLILSDNNLKSITKDTFKGLSNLEHLMLNGQKNQLEIEDNAFVHNP
NLLTLMLTGNKIPTLRNTVFNGLTKLKNLYFDLDKITHIEENVFKSIPKG
VTMENTGRKGVASPNGCCCRRARALAGTKFETLCSINQCSSAGACKEVKP
SSSTTQHPKTTTPVQPSPQTSSSANLVKPSSSEVTAPKITSSSNSQPTST
INPQKSSSKTMVKPSSSEVTAPKITSSLNAQPTSTIKPQMSSSHTMIKPS
SSAGTKPEPTSSLNPQPASTSQYQKTSTIKQAKPSSSSIEPEIEASITTM
QPSQSTAPVNIIHSSSSATVESLTSYFRQEQSSAAIVIKPSRTPSMGYSM
ESLSASSQTQASMSPSTYLSQSPSVSKESSHVMSLPSLSTSIKPSSTLGE
SMFSSSSLISESIDKSYSAMQSTNLPSSSSSISIKSASISLNESSVKTSQ
MLSQSRSLTPSASPSSSYQTSMSSTTIIITSASESPDSQEESSTQTPYIS
KMMSSMKPTRTSATPAPETEPNTITPSSSSVQQQASSSVQGNAVQTNFSI
KILITMLIVFVAVLF Run BLAST on NCBI transcript from alignment at sc0000670:60456..63822+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028190 ID=TCONS_00028190|Name=TCONS_00028190|organism=Clytia hemisphaerica|type=transcript|length=3367bp|location=Sequence derived from alignment at sc0000670:60456..63822+ (Clytia hemisphaerica)
GCCCACTCTTTCAATAATTAGAggtaaaatagtttttaaaatGGGGTTAT
CTGATTTATTGATCAATCTTATTGATATATAATGAAACATGATGAGCAAT
CATATGATGAATCATTTTTGGCTAAACTAGTCTCGAGTGAAGAGTGCAGA
GTTTACAAATTTACATAAAATCTAAACTGGCCAATCAGTTAACTGGTTAA
ATCAGACTtgagtttaaaaaaaaggtaagattttcaaattatgcgggggg
gggggcatctTCAACCACCCATTCAATATAAACATCTATTAACTTcaccc
ccttctcgcagacccactgggaccccttactggaaaaattggccaccATA
TCGTCCCCAGGGGAAAGTTATCCTGGAAACAAAAACTgcaggataatttt
ccactgggaacgatattttggccaatctttCTACTTGGAAGGGGTTCCGG
GTGGGTCTGTGAATGGGGTGGGGATgaattcaaagtcaattttcagcTCC
ACTGGGAAATTAACTTTGACTTCATTCCGATTCGAAAATTCGATGTCTGA
AAATTGCACtcaaaccatccccactggattttttaacctcaatagaaaga
acaatagaatttctatccccattgggagtttaataggaatttttatcccc
actgaggaaaaaggttccaccgaggctgtgagacagggctgTTCTCACAG
ACCacctgggaccccttcccagtGGAAAGATtagccaaaatattgtcccc
agtggaaaattatcctgcagtttttgtccccactgaaaataattaaataa
ccAATCCTCACCGAAAATATCAtgatatttttcccatccccactaaattt
tctgacttgaaaacaaggAAATTTAAATCCCTAGCCATAAAAGATATGAA
AATATCCCCaacgagtttcagtccgttatttttaaccCCACTGGTTgcaa
aaatcctaccgggtctgtgagaagtgggTGTATTAACTACTAGCAATCTA
GTAATGGTACGGTATATaataaaagcttttttatagtgCCAGGAGTACTA
TATCATGAAAGTTTTCCAATGTCTTCGTTACAAATTGATAACCGGAATTG
CAGAAACAGTTCTGTTAATTGACACTCAACATTTTGTTTTTAGGATCACA
CAGTACATTCAAAATGGACCAATCCAAGATCCTTCTCATTGCTCTTGTTG
CTCTTGTTTTAACTTCTACCGCGCATGCGCAATGCCCTGACTCGTGCATC
TGTGGAAGTAATAACATCACTCGATGTTCCCATAAAACTTTATCCATCAT
CGAAACATCGAAGATACCCAAATCAACAGTTCAGCTCTACTATAGTGATA
ATTTCATAACCAGTATCGACAAAAATGATTTTGCAGGACTGACTAATTTG
CATACTCTTCAGTTACAGCAAAACCAAATTTCTAATATTGAAGATGGTAG
TTTCCAAGATCTTCTGAATCTCAAAATGTTGATTTTAAGTGACAACAATT
TGAAGTCGATTACCAAAGATACATTTAAAGGACTTTCAAACCTGGAACAT
TTGATGTTGAATGGCCAAAAAAATCAACTTGAGATTGAAGACAACGCTTT
TGTGCACAACCCTAATCTATTAACACTTATGCTTACTGGAAATAAAATTC
CAACCCTAAGGAACACTGTTTTCAACGGCTTAACTAAACTAAAAAACTTG
TATTTCGACCTCGACAAGATTACTCACATCGAGGAAAATGTCTTCAAGAG
TATCCCCAAAGGAGTCACAATGGAAAACACTGGTAGAAAAGGAGTAGCTA
GTCCCAATGGTTGTTGCTGTAGAAGAGCGAGAGCTTTAGCTGGAACAAAG
TTTGAAACACTttgctcaataaatcaatgtaGCTCCGCTGGTGCATGCAA
AGAGGTGAAACCATCTTCATCTACCACACAACACCCAAAGACAACAACTC
CAGTCCAACCATCTCCTCAAACTTCATCATCTGCTAATTTAGTTAAACCT
TCAAGCTCCGAAGTTACCGCTCCAAAGATAACATCTTCATCAAATTCTCA
GCCAACATCAACCATTAATCCACaaaagagctcatcaaaaacGATGGTAA
AACCCTCAAGCTCCGAAGTTACTGCTCCAAAGATAACATCGTCATTGAAT
GCACAGCCAACATCAACCATTAAACCACAAATGAGCTCATCGCATACGAT
GATAAAACCCTCAAGCTCTGCAGGAACTAAACCTGAACCAACCTCATCTC
TAAATCCTCAACCCGCATCCACTTCGCAATATCAAAAGACTTCCACAATC
AAACAAGCTAAACCATCATCATCTTCGATCGAACCGGAAATAGAAGCATC
GATCACCACCATGCAACCTTCACAATCAACAGCACCAGTAAATATAATTC
ATTCATCAAGCTCAGCAACCGTCGAATCATTAACCTCATATTTTCGCCAG
GAGCAATCCAGTGCAGCAATCGTCATTAAACCGTCTCGAACCCCATCAAT
GGGATATTCAATGGAAAGCCTCTCAGCGTCATCACAAACACAAGCATCAA
TGTCACCAAGCACCTATCTATCACAATCTCCATCTGTTTCCAAAGAATCA
AGCCATGTCATGTCTTTGCCATCACTTTCAACAAGTATCAAACCATCATC
AACATTAGGCGAATCGATGTTCTCTTCCTCGAGTTTGATTTCTGAATCCA
TTGATAAATCCTATTCAGCGATGCAATCAACTAACCTACCATCTTCAAGC
TCCTCCATTTCGATCAAAAGTGCTTCAATTTCACTCAACGAATCATCCGT
GAAAACCTCCCAAATGCTCTCACAATCAAGATCATTAACACCTTCAGCCT
CACCAAGCAGTTCCTACCAAACATCAATGTCATCCACGACAATAATCATT
ACCTCTGCATCAGAATCCCCAGATTCTCAAGAAGAGTCGTCTACTCAAAC
ACCTTACATCTCCAAAATGATGTCATCAATGAAACCTACTCGGACATCAG
CAACACCAGCTCCTGAAACAGAACCTAACACTATCACACCAAGCTCATCT
TCGGTACAACAGCAGGCCAGCTCTTCAGTTCAAGGCAATGCCGTTCAAAC
AaacttttcaatcaaaatattaATTACTATGCTGATTGTATTTGTAGctg
ttttgttttaaatagaTTAATACTTGTATCTTGTATTTGTTAAAATTATT
GTAAGATAGACACTTTTGAAAAATGCGTTTGATTTTCGGACTGAAGATCA
CCGGCAGAACCTCTTTAGAAAACTATATATGGGAAATATACTGATTacat
tcttcttttcttttcaaaattttacttgCAATGAAGCTTACTttgcttaa
ccctttaagtgccaatg Coding sequence (CDS) from alignment at sc0000670:60456..63822+ >TCONS_00028190 ID=TCONS_00028190|Name=TCONS_00028190|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000670:60456..63822+ (Clytia hemisphaerica)
ATGGACCAATCCAAGATCCTTCTCATTGCTCTTGTTGCTCTTGTTTTAAC
TTCTACCGCGCATGCGCAATGCCCTGACTCGTGCATCTGTGGAAGTAATA
ACATCACTCGATGTTCCCATAAAACTTTATCCATCATCGAAACATCGAAG
ATACCCAAATCAACAGTTCAGCTCTACTATAGTGATAATTTCATAACCAG
TATCGACAAAAATGATTTTGCAGGACTGACTAATTTGCATACTCTTCAGT
TACAGCAAAACCAAATTTCTAATATTGAAGATGGTAGTTTCCAAGATCTT
CTGAATCTCAAAATGTTGATTTTAAGTGACAACAATTTGAAGTCGATTAC
CAAAGATACATTTAAAGGACTTTCAAACCTGGAACATTTGATGTTGAATG
GCCAAAAAAATCAACTTGAGATTGAAGACAACGCTTTTGTGCACAACCCT
AATCTATTAACACTTATGCTTACTGGAAATAAAATTCCAACCCTAAGGAA
CACTGTTTTCAACGGCTTAACTAAACTAAAAAACTTGTATTTCGACCTCG
ACAAGATTACTCACATCGAGGAAAATGTCTTCAAGAGTATCCCCAAAGGA
GTCACAATGGAAAACACTGGTAGAAAAGGAGTAGCTAGTCCCAATGGTTG
TTGCTGTAGAAGAGCGAGAGCTTTAGCTGGAACAAAGTTTGAAACACTtt
gctcaataaatcaatgtaGCTCCGCTGGTGCATGCAAAGAGGTGAAACCA
TCTTCATCTACCACACAACACCCAAAGACAACAACTCCAGTCCAACCATC
TCCTCAAACTTCATCATCTGCTAATTTAGTTAAACCTTCAAGCTCCGAAG
TTACCGCTCCAAAGATAACATCTTCATCAAATTCTCAGCCAACATCAACC
ATTAATCCACaaaagagctcatcaaaaacGATGGTAAAACCCTCAAGCTC
CGAAGTTACTGCTCCAAAGATAACATCGTCATTGAATGCACAGCCAACAT
CAACCATTAAACCACAAATGAGCTCATCGCATACGATGATAAAACCCTCA
AGCTCTGCAGGAACTAAACCTGAACCAACCTCATCTCTAAATCCTCAACC
CGCATCCACTTCGCAATATCAAAAGACTTCCACAATCAAACAAGCTAAAC
CATCATCATCTTCGATCGAACCGGAAATAGAAGCATCGATCACCACCATG
CAACCTTCACAATCAACAGCACCAGTAAATATAATTCATTCATCAAGCTC
AGCAACCGTCGAATCATTAACCTCATATTTTCGCCAGGAGCAATCCAGTG
CAGCAATCGTCATTAAACCGTCTCGAACCCCATCAATGGGATATTCAATG
GAAAGCCTCTCAGCGTCATCACAAACACAAGCATCAATGTCACCAAGCAC
CTATCTATCACAATCTCCATCTGTTTCCAAAGAATCAAGCCATGTCATGT
CTTTGCCATCACTTTCAACAAGTATCAAACCATCATCAACATTAGGCGAA
TCGATGTTCTCTTCCTCGAGTTTGATTTCTGAATCCATTGATAAATCCTA
TTCAGCGATGCAATCAACTAACCTACCATCTTCAAGCTCCTCCATTTCGA
TCAAAAGTGCTTCAATTTCACTCAACGAATCATCCGTGAAAACCTCCCAA
ATGCTCTCACAATCAAGATCATTAACACCTTCAGCCTCACCAAGCAGTTC
CTACCAAACATCAATGTCATCCACGACAATAATCATTACCTCTGCATCAG
AATCCCCAGATTCTCAAGAAGAGTCGTCTACTCAAACACCTTACATCTCC
AAAATGATGTCATCAATGAAACCTACTCGGACATCAGCAACACCAGCTCC
TGAAACAGAACCTAACACTATCACACCAAGCTCATCTTCGGTACAACAGC
AGGCCAGCTCTTCAGTTCAAGGCAATGCCGTTCAAACAaacttttcaatc
aaaatattaATTACTATGCTGATTGTATTTGTAGctgttttgttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028190-exon-sc0000670-1491911889:60456..60679 | TCONS_00028190-exon-sc0000670-1491911889:60456..60679 | Clytia hemisphaerica | exon |
| TCONS_00028190-exon-sc0000670-1510915933:60456..60679 | TCONS_00028190-exon-sc0000670-1510915933:60456..60679 | Clytia hemisphaerica | exon |
| TCONS_00028190-exon-sc0000670-1575043694:60456..60679 | TCONS_00028190-exon-sc0000670-1575043694:60456..60679 | Clytia hemisphaerica | exon |
| TCONS_00028190-exon-sc0000670-1491911889:61599..63822 | TCONS_00028190-exon-sc0000670-1491911889:61599..63822 | Clytia hemisphaerica | exon |
| TCONS_00028190-exon-sc0000670-1510915933:61599..63822 | TCONS_00028190-exon-sc0000670-1510915933:61599..63822 | Clytia hemisphaerica | exon |
| TCONS_00028190-exon-sc0000670-1575043694:61599..63822 | TCONS_00028190-exon-sc0000670-1575043694:61599..63822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:60456..63822 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00028190 vs. Swiss-Prot (Human)
Match: LRFN5 (Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Homo sapiens GN=LRFN5 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 2.810e-19 Identity = 76/207 (36.71%), Postives = 105/207 (50.72%), Query Frame = 2
Query: 314 CPDSCIC---GSNNITRCSHKTLSIIETSKIPKSTVQLYYSDNFITSIDKNDFAGXXXXXXXXXXXXXISNIEDGSFQDLLNLKMLILSDNNLKSITKDTFKGLSNLEHLMLNGQKNQLE-IEDNAFVHNPNLLTLMLTGNKIPTLRNTVFNGLTKLKNLYFDLDKITHIEENVFKSIPKGVTMENTGRKGVASPNGCCCRRARALA 922
CP C+C N T C+ K L + + I + TV+L +DNF+T+I + DFA +T+L L L +N IS I +F DL NL+ L L+ N L IT D F GLSNL HL+LN NQL I AF L L L+ N + T+ + L L D + I +I + F + K ++ T K P +RA+ LA
Sbjct: 20 CPKRCVCQILSPNLATLCAKKGLLFVPPN-IDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGLSNLHHLILNN--NQLTLISSTAFDDVFALEELDLSYNNLETIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQRAQVLA 223
The following BLAST results are available for this feature:
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