TCONS_00028102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028102
Unique NameTCONS_00028102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1068

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028102 ID=TCONS_00028102|Name=TCONS_00028102|organism=Clytia hemisphaerica|type=transcript|length=1068bp
TCAAAGTAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaC
TGCATTTATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtG
TTGGATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGT
TAGATATTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCG
ATATAGCCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAG
AAAGCCAGAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGAT
TGTGCAATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAA
TGGTCAAACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAG
CGTTGGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGA
ATTAGTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAAT
TCCCCTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATT
GAGTTTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCA
TGGAAGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTA
AATTGATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATC
AAATCTGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGg
aGTGATGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGT
ATGACATCACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTA
CGATTGGGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGAC
AGATAGCTGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCAT
CAGTACctgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAA
TGAAAACAGAAAGAAAGTCTAGAAGCACAAGCCACATGTTTGTGGGCACG
CCTCTTGAGACAAATTAT
Run BLAST on NCBI

protein sequence of TCONS_00028102-protein

>TCONS_00028102-protein ID=TCONS_00028102-protein|Name=TCONS_00028102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
QSRSYFYFSKIKKNQGLHLSLSLLEFTGIKMSVLDLFEEKDVVKVCAPMV
RYSKQAFRHLVRSYGCDIAYTPMIISESFVQSKKARDVEFTTNAEDRPLI
VQFAASKPKDFADAAEMVKPYSDGVGLNCGCPQRWAMAEGYGSYLMEHGE
LVKDIVLQTKQRVGFEFPCEVKIRIHKDSRKTIEFCQRAERAGADWITVH
GRTPKERKEPVHYDVIKLIKESIGIPVVANGDIKSEEDILKVKELTNVDG
VMAAQGMLNNPAMYAGYDITPMQCVEDWMDIALRLGTPFRTFHHHLMYMT
DSWHTKSERMVFNNLSSVPAVLNFLEVHYGIT
Run BLAST on NCBI

transcript from alignment at sc0000664:93070..99346+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028102 ID=TCONS_00028102|Name=TCONS_00028102|organism=Clytia hemisphaerica|type=transcript|length=6277bp|location=Sequence derived from alignment at sc0000664:93070..99346+ (Clytia hemisphaerica)
TCAAAGTAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaC
TGCATTTATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtG
TTGGATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGT
TAGATATTCAAAGTAGGTACATTCGAATGAGACCTTCTATTTCAATCTAA
GTGCGTGCTCATAATCAAAACGAACCTGATTTTCCCTAAATTGGcttgct
tttttaaaccaacTTCCAACTATTAGAATGTACACAGTTGACTTAAAAAT
TGGGCCTAAACAGCATTTTCGTAGTCATTCCTAAATGCTAAGGCTCGGAT
TGTTCTTATTTAGTTCTTAAGTTTTACCCAAAAGTGAGTCtcgtgttttg
aaaatttttgttataaaaCAGCACATGAAAGTAATTGttttttctaattc
tttttTTCCAGACAAGCGTTCCGTCACTTAGTTCGAAGGTACGATCCATT
CccgattttttcatttttatttattgaacaattatcaaaacaaaccctAT
ACACTCTAGTTAGAAAGAATTGGAATTGAAAGAATTCATCAGATATttaa
aaatcagccattttagGCTTTGAATCGTTCCTAAATTCTTCTGTTCTTTG
GGGTTTTTGAGCCAAATTGATCTTCAAATTGTTCTAAAACAAAGGATTGt
attgaaaataaggaaaatataCTGTAAGAGCGTAGTCACATATCTTCTGA
AAATGGTTAAAACTTCATTTTGTTCCCTAACCCCGAACTCAGAAAATTGA
ATCTTGTTTCTTGAAGGGAATGAGATAGCgctcagaatttttttttcatt
acagTTATGGTTGCGATATAGCCTATACACCGATGATCATTTCAGAATCG
TTTGTCCAGTCTAAGAAAGCCAGAGATGTCGAGTTCACCACTAATGCAGG
TGTGATTGATACTGCGCTtttcctgaagaaaaaaaacgtacATCCCccat
caattaaaaaaattgcaaaaattaactATACTTTTTCAAATCCTACATAC
AGCCGTGCCGAATTCCACATTAAGCTGCCACCAAGTTTCAGTTACAACTT
TTATAAAGTCTAATTTGCTGCTCTCACATAATTTGAGATACCATTGTTTT
GCATTGAGAATCTAAATGCGCAATATTTTGTCATATTTTGACATGAGTGA
GTTTATGTTTTGGCGCTTTTGAGGACGGCAGTGTGACTGAAGCGATTAGG
AATAACCCGCTGATTTTCTGTCGTCCTCAGCtaatcaggatctagacaag
tCAGAAGCgaaccgtctccgtcgcagaaacaCACTCATACGTAAAATCGC
taatgtttcttagtttttttatttcagaggATCGGCCATTGATTGTGCAA
TTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTCAA
ACCgtgagtgaaaatgatagtaTAAAACAAAGCATTTGATCGACCTCTTA
GTTGTCAGATTGGAGGTGTTCCCCAAGTGGAGGGGTTTTTTTTGTAGAGG
ATTGGTTTGCATGACATCGAATATCATCAAAAGATTCTTTAATTTGTTGA
CCGCGCATGAAGCATTAGGGATAAGTCAATATTCGAAGCCGAGCATCTAG
TCTTTACAATTCAATTATAAAACATTGAAATCTACTGTATATCTTTCTTG
AAAGGAGGTGCGAGGCAAAAACTATAAGTAAAAGTGTCGCCATCGATGAT
TTCTTCCTTTCGTTTTGTTCttcgaatttttttatatttccatCCTATTT
TAATACATTTAGATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCAC
AGCGTTGGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGT
GAATTAGTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGA
ATTCCCCTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGGTATTTTG
GTTTTTCATAAATACTTTGTATCTTTAAACTAGGATAGATTTTTTAGGGT
GCTGCTATAAGTATTACAAAACATACATAGTACTACCATTTAGAGACTAA
AATCTAATCAAGAATTTCTAAATAATAAAGAAACTCTCTAATAAAGAAAC
TAAGTATTGAGAGTTTGGTctaattttcaatgaaattccctctgaaaaaa
cctttttaaacaatcCGCCGATTTAAACCCCCATTAAAGTTCTTCCTTTA
AGGTCCTCACGTTATACGTGAGATGCACTTTGGTATAGATTATACTAGTA
AATGGTGCTAAAATTATTTTAGCTTAGTGCTAAGCTTTTGATAGGTTGGA
TCTTTTATAAAAGAATTGACCCCTCCCTGTCTAACGAAAAGGGAACCTCC
TCTTTAGTTATCAAGTTTAGGGGAAACATTGATCACAATTTTGCAATTGT
GTGACGTTTATGTTAATTTATTATTCTTTACTTACAGAAAAACCATTGAG
TTTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGG
AAGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAAT
TGGTGAGAGATTTACCTTATCAAATCGCTATTTTATTGgcttaaatttta
aaattttatttccatTCCTATTTAACTTTGGTTGTCAAATCTGCTAACAC
CACAAAGTTTACCCTTTACTAGGTTTTTTAGTACGTAGTGATGTCTTTTG
CAATACAAGCAACATGTANgaaatttgtgattttttttttacttttgaaa
aaaatgttttgaatttttttgcttccggaatctttaaaaacctaaaattt
taagtgaaaaattgaaaaatatgtgctcacttagtacaccatatcctacc
aaaatcgacaattttgggcttaggcaccacccatgtNGACTGATCTTGTT
ATTTTCATAATCCCATTATCATTAGATCAAAGAATCGATCGGCATACCGG
TGGTTGCTAATGGTGATATCAAATCTGAAGAAGATATTCTCAAAGTCAAA
GAGCTGACCAACGTTGATGGTAAGGGTAAAAGTGTTAAGTCTTTTTGAAG
GGTGGAACCCCTCGCCTCGGATTGTCTATATATATAGACCCTTAATTATA
ACATTTTCTATTGTGTAACTTTTTGATGCCGTAATAACACATACAAACTT
AAAAGCAGGATAGTCCAAAGATTCTTCATACTATGAAAGGATCACAAGTT
AatttttactttgatttcatttcattttataaaaattcatGAAANTTACT
AAATCATTTATAGTTATTTTAGTGATCTTTTTTATGGTCTATGACTTTTT
GGAACTAAGGTATTAGATGACAAATTAATGAAGGACAAAATAGTAACTAG
TGTacatataatgaatgaactcTCAATAAGCACGGTAAAACCTTTTGTTT
GACAAAGAACATATCAtttccttttttgatttttattttaggaGTGATGG
CAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGACATC
ACACCAATGCAGTGCGTTGAAGACTGGGTAAGAGAGACTGAACTTCAATT
CAGGCCACcactattttgaccctttcaaACTAACATTCAAAGATCGAGCG
TATTTTGAATTAACCCTTTAATTATACTTGAAGAAAGAATCCTTCCCGTT
GAAGTAACCCCCTCCCTCCCTACGAAAGTAGgcgaatgaaaaaaaatttc
cctacaaactttctgaaaaagaaaagacaaatatgtttttaaaattacaa
CCAATGAAACTTGGACAAATGCCTCTCAGTTTATATTGCAGTCTCTTGTA
AGAACCCCTTTTCCTCCCCTAGCAATGCTCCTCTAAAGGTACCGACCACG
TTTGTAAATTGGAACTTTAAATACATCGCTTGTGTTTCGATAACATGTAA
GATCATTGAGGGAGTATGAGGGCGCTCGAAAATAAACGCCGCTGCCTGAT
TTTTGTCTTACGTTTGAAAGGTTCAGTAGGGCTGCCCTCCCTCGTTTGAT
TTCAAGCTTTCATTTCTTTAATTCTCGGAGCCTTCAAAGAAATATGTAAA
GAATAGATAGCTTTTTGATAGCACATCTATCAACCCTTAATTCCGCAGTC
AGCTTCTAGGAGAACTGGTTGATGAATTGACAAGGAAATGACGTCAGAAT
TTGTTGTCTTTGAGAATTTTAATGGCATGATTTCAGACATTTTGAAGTCA
TGGCTTCTTGTCAACCTGGAAGCCAGTCCATGCTTTAATGGTTGATGTGT
GAATTGGTTACTTGATATTTTCAGATGGACATAGCATTACGATTGGGGAC
GCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGATAGCTGGC
ATACTAAATCTGGTATTAACTTTTTCGTTAATTCCGAATAGAGCTCAAAT
ACTTCTGTTCTAGATTGACTGTAATGCTGCTGCCGccatcatagatttat
aaagcccgaagtgctagatgtcgtgctttaagccatcacaggcaaaaaaa
gtgaatatcggaaaaaatattgttgctattgttgctattgtttttgaaaa
cccgtGAAGCTTcagattggtcaagcgctgaaattctattgtaatgtcac
gtgacctaggtaaagtttcctacctaaccacggcacactttacaGCAGAA
ATACAccatctagtccttcgggctttataaatataGGGCTGCCACCCGTA
TTTCTCATCCACCGATATGTAAAAGATCATAAAACTTTTTGTTGTGATAC
CGTTTGCTCTAGCCCTATAGTAAAGCTAAAGGATTTTATGTGAATTTTAC
CCGCTACTGTCAATCTATCTAATGATGGCCTTGGATATATCCTACCATTT
CGCCAGAGTCGGTGTTTTcgttactttttaattttatttagaaCGTATGG
TGTTCAACAACCTTTCATCAGTACctgctgttcttaattttctcGAAGTG
CATTATGGTATCACGTAATGAAAACAGAAAGAAAGTCTAGAAGGTATATC
TTTCAATGACATCctaatttttaatttgaagttggcattgttgttttttt
gtgatttttttcacattgtATTTTTTTCGGGCTAAATGTTAAATGAGTCT
GAGAAAAACAATATGGTGAACATATGAAGAAATTCATTCATTGCTTACTT
GGTTTGCACGCTCAAATTTATTGGACAATACGCTGGCTTTTATTTCGCTC
GTTATCTCACTTTTGATAGGAATATTAACCTATGTGGTAATGCCCTTGAT
ATCAATATTGCTTGAATTTATTGGAACTTGTTCTACCTGGAGATTAGACT
ATTTGATTGATAGTTGAAATGCATTATTCAAACAGATACTTCGATCGAAA
TAAAGAGAATTATAATTTTCGTATTCTTACAATAAACTACTTTGGCTTTT
GGTATGAAGAAAATATGGACTAGACAATCGATTTGGGTGCATCTCACTAA
TGCGACACTTTATAGTCCGACAACAAAACAGTCCAAATCAAGACGGATTG
AAGCAGTCCGACAGTACGTTGACTCAGACAAATTTTATCATGCAAATACA
ATCGGACGGTCTCAAATcacgattttcattttttttaacggTAAATGCTT
CTTCATATTTGATCCGAGGAAACAAAATTTACTTTATCTTACAGCCAAGG
ATGTTTTTTCTCGAGAACACTATTATTATAGTACAATATCTTTTTTAACT
TTGTACACcattttaatcgaactttttagattgttaagaattttattttt
gaaaaaagataccCAGCTAAAAATTCAACTGTGATTCGGAAATTCGTTCC
TTTTCCTATTGAACTTACTGACACCAAACCAGCTgtctgtttatttttca
aattttacattcATGTTCTAAATGGAAAGAATAAAtcatacagtgtgtcc
caaaaaagccgacaaattgaaaaaatgaatgaataGAAATTAGGAACATT
GTAAGCATTTATTCTTCGAAAAACAAGACTTTGTTAGCTCTAGAACATaa
acaagaacattttaagaacatgtatatattttaaaattttatttagacTC
GCTAAACAACAATTTGTTGCACAAAGAATCTTTATCTGTGCgataaaatt
atatttattaagAGTAACCGtagtattttcaaaaagaaagcaGATTTTTT
CGTTGAGCAGCCTCGTCTCCATTCCATTCTTCAGCACAAGCCACATGTTT
GTGGGCACGCCTCTTGAGACAAATTAT

Coding sequence (CDS) from alignment at sc0000664:93070..99346+

>TCONS_00028102 ID=TCONS_00028102|Name=TCONS_00028102|organism=Clytia hemisphaerica|type=CDS|length=9990bp|location=Sequence derived from alignment at sc0000664:93070..99346+ (Clytia hemisphaerica)
CAAAGTAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaCT
GCATTTATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGT
TGGATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTT
AGATATTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGA
TATAGCCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGA
AAGCCAGAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATT
GTGCAATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAAT
GGTCAAACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGC
GTTGGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAA
TTAGTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATT
CCCCTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTG
AGTTTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCAT
GGAAGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAA
ATTGATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCA
AATCTGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGga
GTGATGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTA
TGACATCACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTAC
GATTGGGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACA
GATAGCTGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATC
AGTACctgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAAC
AAAGTAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTG
CATTTATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTT
GGATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTA
GATATTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGAT
ATAGCCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAA
AGCCAGAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTG
TGCAATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATG
GTCAAACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCG
TTGGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAAT
TAGTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTC
CCCTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGA
GTTTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATG
GAAGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAA
TTGATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAA
ATCTGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaG
TGATGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTAT
GACATCACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACG
ATTGGGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAG
ATAGCTGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCA
GTACctgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACA
AAGTAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGC
ATTTATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTG
GATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAG
ATATTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATA
TAGCCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAA
GCCAGAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGT
GCAATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGG
TCAAACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGT
TGGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATT
AGTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCC
CCTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAG
TTTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGG
AAGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAAT
TGATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAA
TCTGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGT
GATGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATG
ACATCACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGA
TTGGGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGA
TAGCTGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAG
TACctgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACAA
AGTAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGCA
TTTATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTGG
ATTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGA
TATTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATAT
AGCCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAG
CCAGAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTG
CAATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGT
CAAACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTT
GGGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTA
GTCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCC
CTGCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGT
TTTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGA
AGAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATT
GATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAAT
CTGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTG
ATGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGA
CATCACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGAT
TGGGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGAT
AGCTGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGT
ACctgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACAAA
GTAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGCAT
TTATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTGGA
TTTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGAT
ATTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATATA
GCCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAGC
CAGAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTGC
AATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTC
AAACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTG
GGCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAG
TCAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCC
TGCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGTT
TTGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAA
GAACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATTG
ATCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAATC
TGAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTGA
TGGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGAC
ATCACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGATT
GGGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGATA
GCTGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGTA
CctgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACAAAG
TAGATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGCATT
TATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTGGAT
TTGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGATA
TTCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATATAG
CCTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAGCC
AGAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTGCA
ATTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTCA
AACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTGG
GCAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAGT
CAAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCCT
GCGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGTTT
TGTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAAG
AACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATTGA
TCAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAATCT
GAAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTGAT
GGCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGACA
TCACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGATTG
GGGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGATAG
CTGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGTAC
ctgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACAAAGT
AGATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGCATTT
ATCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTGGATT
TGTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGATAT
TCAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATATAGC
CTATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAGCCA
GAGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTGCAA
TTTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTCAA
ACCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTGGG
CAATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAGTC
AAAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCCTG
CGAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGTTTT
GTCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAAGA
ACCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATTGAT
CAAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAATCTG
AAGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTGATG
GCAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGACAT
CACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGATTGG
GGACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGATAGC
TGGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGTACc
tgctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACAAAGTA
GATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGCATTTA
TCCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTGGATTT
GTTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGATATT
CAAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATATAGCC
TATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAGCCAG
AGATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTGCAAT
TTGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTCAAA
CCATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTGGGC
AATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAGTCA
AAGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCCTGC
GAAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGTTTTG
TCAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAAGAA
CCCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATTGATC
AAAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAATCTGA
AGAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTGATGG
CAGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGACATC
ACACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGATTGGG
GACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGATAGCT
GGCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGTACct
gctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACAAAGTAG
ATCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGCATTTAT
CCTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTGGATTTG
TTTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGATATTC
AAAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATATAGCCT
ATACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAGCCAGA
GATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTGCAATT
TGCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTCAAAC
CATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTGGGCA
ATGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAGTCAA
AGACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCCTGCG
AAGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGTTTTGT
CAACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAAGAAC
CCCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATTGATCA
AAGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAATCTGAA
GAAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTGATGGC
AGCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGACATCA
CACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGATTGGGG
ACGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGATAGCTG
GCATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGTACctg
ctgttcttaattttctcGAAGTGCATTATGGTATCACGTAACAAAGTAGA
TCCTACTtctattttagtaaaataaagaaaaatcaaggaCTGCATTTATC
CTTATCACTGCTTGAATTCactggaataaaaatgtcagtGTTGGATTTGT
TTGAAGAGAAAGATGTCGTTAAAGTATGTGCACCCATGGTTAGATATTCA
AAACAAGCGTTCCGTCACTTAGTTCGAAGTTATGGTTGCGATATAGCCTA
TACACCGATGATCATTTCAGAATCGTTTGTCCAGTCTAAGAAAGCCAGAG
ATGTCGAGTTCACCACTAATGCAGaggATCGGCCATTGATTGTGCAATTT
GCAGCTTCCAAACCTAAAGATTTTGCTGATGCTGCAGAAATGGTCAAACC
ATACAGTGACGGTGTAGGTTTGAACTGTGGTTGCCCACAGCGTTGGGCAA
TGGCTGAAGGTTATGGATCCTATCTGATGGAGCACGGTGAATTAGTCAAA
GACATTGTCCTTCAAACCAAGCAACGCGTTGGATTCGAATTCCCCTGCGA
AGTGAAAATCAGAATACATAAAGATAGCAGAAAAACCATTGAGTTTTGTC
AACGAGCGGAACGTGCTGGTGCTGATTGGATCACTGTTCATGGAAGAACC
CCCAAAGAACGAAAAGAACCTGTTCACTATGATGTCATTAAATTGATCAA
AGAATCGATCGGCATACCGGTGGTTGCTAATGGTGATATCAAATCTGAAG
AAGATATTCTCAAAGTCAAAGAGCTGACCAACGTTGATGgaGTGATGGCA
GCTCAAGGGATGCTAAACAATCCAGCAATGTATGCTGGGTATGACATCAC
ACCAATGCAGTGCGTTGAAGACTGGATGGACATAGCATTACGATTGGGGA
CGCCATTTCGAACATTTCACCACCACCTTATGTACATGACAGATAGCTGG
CATACTAAATCTGaaCGTATGGTGTTCAACAACCTTTCATCAGTACctgc
tgttcttaattttctcGAAGTGCATTATGGTATCACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015899XLOC_015899Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028102-proteinTCONS_00028102-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028102-exon-sc0000664-1491911889:93070..93231TCONS_00028102-exon-sc0000664-1491911889:93070..93231Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:93070..93231TCONS_00028102-exon-sc0000664-1510915933:93070..93231Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:93070..93231TCONS_00028102-exon-sc0000664-1575043694:93070..93231Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:93531..93557TCONS_00028102-exon-sc0000664-1491911889:93531..93557Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:93531..93557TCONS_00028102-exon-sc0000664-1510915933:93531..93557Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:93531..93557TCONS_00028102-exon-sc0000664-1575043694:93531..93557Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:93924..94018TCONS_00028102-exon-sc0000664-1491911889:93924..94018Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:93924..94018TCONS_00028102-exon-sc0000664-1510915933:93924..94018Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:93924..94018TCONS_00028102-exon-sc0000664-1575043694:93924..94018Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:94447..94522TCONS_00028102-exon-sc0000664-1491911889:94447..94522Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:94447..94522TCONS_00028102-exon-sc0000664-1510915933:94447..94522Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:94447..94522TCONS_00028102-exon-sc0000664-1575043694:94447..94522Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:94882..95061TCONS_00028102-exon-sc0000664-1491911889:94882..95061Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:94882..95061TCONS_00028102-exon-sc0000664-1510915933:94882..95061Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:94882..95061TCONS_00028102-exon-sc0000664-1575043694:94882..95061Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:95557..95671TCONS_00028102-exon-sc0000664-1491911889:95557..95671Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:95557..95671TCONS_00028102-exon-sc0000664-1510915933:95557..95671Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:95557..95671TCONS_00028102-exon-sc0000664-1575043694:95557..95671Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:96045..96138TCONS_00028102-exon-sc0000664-1491911889:96045..96138Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:96045..96138TCONS_00028102-exon-sc0000664-1510915933:96045..96138Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:96045..96138TCONS_00028102-exon-sc0000664-1575043694:96045..96138Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:96561..96646TCONS_00028102-exon-sc0000664-1491911889:96561..96646Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:96561..96646TCONS_00028102-exon-sc0000664-1510915933:96561..96646Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:96561..96646TCONS_00028102-exon-sc0000664-1575043694:96561..96646Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:97394..97481TCONS_00028102-exon-sc0000664-1491911889:97394..97481Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:97394..97481TCONS_00028102-exon-sc0000664-1510915933:97394..97481Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:97394..97481TCONS_00028102-exon-sc0000664-1575043694:97394..97481Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:98011..98112TCONS_00028102-exon-sc0000664-1491911889:98011..98112Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:98011..98112TCONS_00028102-exon-sc0000664-1510915933:98011..98112Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:98011..98112TCONS_00028102-exon-sc0000664-1575043694:98011..98112Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1491911889:99304..99346TCONS_00028102-exon-sc0000664-1491911889:99304..99346Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1510915933:99304..99346TCONS_00028102-exon-sc0000664-1510915933:99304..99346Clytia hemisphaericaexon
TCONS_00028102-exon-sc0000664-1575043694:99304..99346TCONS_00028102-exon-sc0000664-1575043694:99304..99346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000664supercontigsc0000664:93070..99346 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.2952	3.84281	0.35363	0.87784	9.08602	8.92292	7.19155	9.65625	10.585	14.2984	7.47227	8.9344	5.77542	6.18816	10.696	12.4077	12.1504	11.2044	1.82666	2.12893	6.07068	6.03792	12.4094	7.4656	4.59854	3.24043	3.79513	3.74681	7.95009	6.99683
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR001269tRNA_hU_synthase
IPR018517tRNA_hU_synthase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
Blast
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BLAST of TCONS_00028102 vs. Swiss-Prot (Human)
Match: DUS4L (tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2)

HSP 1 Score: 372.474 bits (955), Expect = 1.591e-127
Identity = 169/299 (56.52%), Postives = 224/299 (74.92%), Query Frame = 2 
Query:  101 LDLFEEKDVVKVCAPMVRYSKQAFRHLVRSYGCDIAYTPMIISESFVQSKKARDVEFTTNAEDRPLIVQFAASKPKDFADAAEMVKPYSDGVGLNCGCPQRWAMAEGYGSYLMEHGELVKDIVLQTKQRVGFE-FPCEVKIRIHKDSRKTIEFCQRAERAGADWITVHGRTPKERKEPVHYDVIKLIKESIGIPVVANGDIKSEEDILKVKELTNVDGVMAAQGMLNNPAMYAGYDITPMQCVEDWMDIALRLGTPFRTFHHHLMYMTDSWHTKSERMVFNNLSSVPAVLNFLEVHYGI 994
            +++F    +VKVCAPMVRYSK AFR LVR Y CD+ YTPMI++  FV+S KARD EFTTN  D PLIVQFAA+  +  +DAA +V PY++G+ +NCGCPQRWAMAEGYG+ L+   ELV+D+V Q + +V    F   +KIRIH D ++T++ CQ+AE  G  WITVHGRT +ER +PVHYD IK+IKE++ IPV+ANGDI+S ++   V  +T  DGVM A+G+L NPAM+AGY+ TP++C+ DW+DIAL LGTP+  FH HLMYM +   ++ E+ VFN LSS  A++++L  HYGI
Sbjct:   19 IEMFHSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAIIDYLTDHYGI 317
The following BLAST results are available for this feature:
BLAST of TCONS_00028102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS4L1.591e-12756.52tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-li... [more]
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