TCONS_00028102-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028102-protein
Unique NameTCONS_00028102-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028102-protein ID=TCONS_00028102-protein|Name=TCONS_00028102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
QSRSYFYFSKIKKNQGLHLSLSLLEFTGIKMSVLDLFEEKDVVKVCAPMV
RYSKQAFRHLVRSYGCDIAYTPMIISESFVQSKKARDVEFTTNAEDRPLI
VQFAASKPKDFADAAEMVKPYSDGVGLNCGCPQRWAMAEGYGSYLMEHGE
LVKDIVLQTKQRVGFEFPCEVKIRIHKDSRKTIEFCQRAERAGADWITVH
GRTPKERKEPVHYDVIKLIKESIGIPVVANGDIKSEEDILKVKELTNVDG
VMAAQGMLNNPAMYAGYDITPMQCVEDWMDIALRLGTPFRTFHHHLMYMT
DSWHTKSERMVFNNLSSVPAVLNFLEVHYGIT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015899XLOC_015899Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028102TCONS_00028102Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR001269tRNA_hU_synthase
IPR018517tRNA_hU_synthase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 43..267
e-value: 7.5E-53
score: 179.1
IPR001269tRNA-dihydrouridine synthasePIRSFPIRSF006621Duscoord: 37..326
e-value: 5.8E-78
score: 260.1
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 46..307
e-value: 4.2E-66
score: 223.0
IPR018517tRNA-dihydrouridine synthase, conserved sitePROSITEPS01136UPF0034coord: 125..143
NoneNo IPR availableCDDcd02801DUS_like_FMNcoord: 43..268
e-value: 1.37484E-98
score: 292.476
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 45..327

Blast
[Close]
BLAST of TCONS_00028102-protein vs. Swiss-Prot (Human)
Match: DUS4L (tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2)

HSP 1 Score: 372.474 bits (955), Expect = 1.172e-129
Identity = 169/299 (56.52%), Postives = 224/299 (74.92%), Query Frame = 0 
Query:   34 LDLFEEKDVVKVCAPMVRYSKQAFRHLVRSYGCDIAYTPMIISESFVQSKKARDVEFTTNAEDRPLIVQFAASKPKDFADAAEMVKPYSDGVGLNCGCPQRWAMAEGYGSYLMEHGELVKDIVLQTKQRVGFE-FPCEVKIRIHKDSRKTIEFCQRAERAGADWITVHGRTPKERKEPVHYDVIKLIKESIGIPVVANGDIKSEEDILKVKELTNVDGVMAAQGMLNNPAMYAGYDITPMQCVEDWMDIALRLGTPFRTFHHHLMYMTDSWHTKSERMVFNNLSSVPAVLNFLEVHYGI 331
            +++F    +VKVCAPMVRYSK AFR LVR Y CD+ YTPMI++  FV+S KARD EFTTN  D PLIVQFAA+  +  +DAA +V PY++G+ +NCGCPQRWAMAEGYG+ L+   ELV+D+V Q + +V    F   +KIRIH D ++T++ CQ+AE  G  WITVHGRT +ER +PVHYD IK+IKE++ IPV+ANGDI+S ++   V  +T  DGVM A+G+L NPAM+AGY+ TP++C+ DW+DIAL LGTP+  FH HLMYM +   ++ E+ VFN LSS  A++++L  HYGI
Sbjct:   19 IEMFHSGQLVKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPVHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEKRVFNALSSTSAIIDYLTDHYGI 317
The following BLAST results are available for this feature:
BLAST of TCONS_00028102-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS4L1.172e-12956.52tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-li... [more]
back to top