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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027806 ID=TCONS_00027806|Name=TCONS_00027806|organism=Clytia hemisphaerica|type=transcript|length=3418bpRun BLAST on NCBI protein sequence of TCONS_00027806-protein >TCONS_00027806-protein ID=TCONS_00027806-protein|Name=TCONS_00027806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1043bp ENHGKSVPDGQQESIIMCSNQELCLIDSGITSLDEVNLSDALVNLNLHCNRun BLAST on NCBI transcript from alignment at sc0000646:124307..159839+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027806 ID=TCONS_00027806|Name=TCONS_00027806|organism=Clytia hemisphaerica|type=transcript|length=35533bp|location=Sequence derived from alignment at sc0000646:124307..159839+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000646:124307..159839+ >TCONS_00027806 ID=TCONS_00027806|Name=TCONS_00027806|organism=Clytia hemisphaerica|type=CDS|length=75168bp|location=Sequence derived from alignment at sc0000646:124307..159839+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027806 vs. Swiss-Prot (Human)
Match: LRCC1 (Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=LRRCC1 PE=1 SV=2) HSP 1 Score: 371.703 bits (953), Expect = 4.261e-110 Identity = 317/1028 (30.84%), Postives = 550/1028 (53.50%), Query Frame = 2
Query: 65 ELCLIDSGITSLDEVNLSDALVNLNLHCNHIREVGDQLTHHKTLKYLDLSSNKLKEISGLSGCVNLQFLNLASNYITKVKGIDRLRRLKKLNLTFNQIDDLTGLKAFRKSSHSLQHVELYSNRLNSLKHVIECLSSCNCLQKIELRQGKNTNPICGVPAYRANILAQLPWLKSLDGMDRDGNQCESSTHTSDVPGXXXXXXXXXXXXXXSEPFQAASLSTISKDETVNNDLSTPKIDSVLLKFKERQQPGSFPANENNVDETKDGCEQDAPQK-----DLMTVDRLHALEKQLEQLTKLYKEKQNSTNKENEIDVHIXXXXXXXXXXXXXXXXXXFPSPPKHTKRKPVPLKQGVLTNKVKPDATSQNKGVSC-ATTRPSRFQN-RKPLTRANPITLHKGKPSKPLSERQVRSAEDDETYLNLIHEIDVERERRWKAEQATRKLLDSLKSLKETLIEERKIQEAAVTFNAKLKEALQKERSVKKTFEDSSKSLQEENERLKSRLSECVECSKQNEESVKDLHQTCQQLEKEKSQMEIHYTKTLRDLQYDSGGYKRELKLLRNTTDKQKXXXXXXXXXXXXXXXXHRTILENKVNIDGTEVSKIVEKEVQKCDHRHRELLNQLESKLAEKNKDYEDLEDEFRMALKIEADRYNKLAQAYEEVNKGADELKQSFGELSNKEAKARSLIADLSSMVKEQKFKISELVKHKQEINKNQTGQIQRLEVEIEPLRKIASKFETLQQDKNRMSAHIKGQDSIIQGLRSERRLWGQELAQQGANLAQERGRLDLQIESQQKEIVAFKNKIHDQEDTINIKNKLIEDQTNSIKKMKDDLRVASEENAKLTVEEERLRGERDEQLLQLKETCDGQQEQIEALVSRKEELKDLLQDTEDQLQAEKKDLRRLKTQWEDRDNLIGKLEEKVIKMKTSFDGKEEKLRKECAELQEQNKIIENSLKEFQEKYERENTTKEHEFNLKMKRLISQKEDEIQMEKEKVIQVEEEMRMILTETAAQKKQLEQRVNKLSKAFNDIQNDL 3127
++C +D G+ S+ E++L L +NLHCN+I ++ + + H L++LDLSSN++ I GL+ L LNL+ N ITKV+G++ L L +LN+++N IDDL+GL H L++++L+SNR++S+ H+++C+ + L + L + + NP+C +P YRA IL LP L+ LD + G + +++ + ++L+S + S IS+DE ++ P I + + + +Q S P++ + C+ P+K DL +L L+ +Q+ +L E NS + E D T T + E P+ +K +P + +K + N VSC +P + + AN L + + K + +S +D TY +L+ ++D ERE+RW+AEQA KL+D + L + E+ I A+ +LKE + +ER+ K E LQ E ++L L + + + + + ++ L +T +++E++K Q + + +++++ + RE+ LLR + +++EQ QQL +LL L+EQEHR LE + + + KE+ K + +H +++ + + K+ ++ Y DLE+EFR+AL +EA R+ + +E V + K + KE ++ SLI DL+ MVKEQK K++E+ K KQE N QI LE+ IE ++ + + E L+ +K ++ + + ++S+I GLR+ER++WG ELAQQG++LAQ RG+L+ QIES +E + D + IK K+I+DQT +I+K+KD L+ E +L + + EQL + D E++E RKE+LK L+ E +L+ +K L +W D+ L+ LE +V ++K F+ KE+KL+ E + E K L + ++R+ ++ +L ++K+ I KV Q+E+EMR +L ET KK +E ++ +L+ A N+IQ D+
Sbjct: 25 DVCFMDKGLQSISELSLDSTLHAVNLHCNNISKI-EAIDHIWNLQHLDLSSNQISRIEGLNTLTKLCTLNLSCNLITKVEGLEELINLTRLNVSYNHIDDLSGLIPLHGIKHKLRYIDLHSNRIDSIHHLLQCMVGLHFLTNLILEKDGDDNPVCRLPGYRAVILQTLPQLRILDCKNIFG----EPVNLTEINSSQLQCLEGLLDNLVS----SDSPLNISEDEIIDR---MPVITAPIDELVPLEQFASTPSDAV-LTSFMSVCQSSEPEKNNHENDLQNEIKLQKLD---DQILQLLNETSNSIDNVLEKDPRPKRDTDITSESDYGNRKECNRKVPRRSK---IPYDAKTIQT-IKHHNKNYNSFVSCNRKMKPPYLKELYVSSSLANCPMLQESEKPKTEIIKVDQSHSEDNTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVEARRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM 1032 The following BLAST results are available for this feature:
BLAST of TCONS_00027806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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