TCONS_00027806-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027806-protein
Unique NameTCONS_00027806-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1043

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027806-protein ID=TCONS_00027806-protein|Name=TCONS_00027806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1043bp
ENHGKSVPDGQQESIIMCSNQELCLIDSGITSLDEVNLSDALVNLNLHCN
HIREVGDQLTHHKTLKYLDLSSNKLKEISGLSGCVNLQFLNLASNYITKV
KGIDRLRRLKKLNLTFNQIDDLTGLKAFRKSSHSLQHVELYSNRLNSLKH
VIECLSSCNCLQKIELRQGKNTNPICGVPAYRANILAQLPWLKSLDGMDR
DGNQCESSTHTSDVPGLEELLDFLDPEDLLSEPFQAASLSTISKDETVNN
DLSTPKIDSVLLKFKERQQPGSFPANENNVDETKDGCEQDAPQKDLMTVD
RLHALEKQLEQLTKLYKEKQNSTNKENEIDVHITDTTTTTETYSTDDDDE
SFPSPPKHTKRKPVPLKQGVLTNKVKPDATSQNKGVSCATTRPSRFQNRK
PLTRANPITLHKGKPSKPLSERQVRSAEDDETYLNLIHEIDVERERRWKA
EQATRKLLDSLKSLKETLIEERKIQEAAVTFNAKLKEALQKERSVKKTFE
DSSKSLQEENERLKSRLSECVECSKQNEESVKDLHQTCQQLEKEKSQMEI
HYTKTLRDLQYDSGGYKRELKLLRNTTDKQKEQLQQLQELLILREQEHRT
ILENKVNIDGTEVSKIVEKEVQKCDHRHRELLNQLESKLAEKNKDYEDLE
DEFRMALKIEADRYNKLAQAYEEVNKGADELKQSFGELSNKEAKARSLIA
DLSSMVKEQKFKISELVKHKQEINKNQTGQIQRLEVEIEPLRKIASKFET
LQQDKNRMSAHIKGQDSIIQGLRSERRLWGQELAQQGANLAQERGRLDLQ
IESQQKEIVAFKNKIHDQEDTINIKNKLIEDQTNSIKKMKDDLRVASEEN
AKLTVEEERLRGERDEQLLQLKETCDGQQEQIEALVSRKEELKDLLQDTE
DQLQAEKKDLRRLKTQWEDRDNLIGKLEEKVIKMKTSFDGKEEKLRKECA
ELQEQNKIIENSLKEFQEKYERENTTKEHEFNLKMKRLISQKEDEIQMEK
EKVIQVEEEMRMILTETAAQKKQLEQRVNKLSKAFNDIQNDLK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015708XLOC_015708Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027806TCONS_00027806Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 664..684
NoneNo IPR availableCOILSCoilCoilcoord: 829..863
NoneNo IPR availableCOILSCoilCoilcoord: 935..976
NoneNo IPR availableCOILSCoilCoilcoord: 496..516
NoneNo IPR availableCOILSCoilCoilcoord: 524..551
NoneNo IPR availableCOILSCoilCoilcoord: 868..920
NoneNo IPR availableCOILSCoilCoilcoord: 458..478
NoneNo IPR availableCOILSCoilCoilcoord: 801..821
NoneNo IPR availableCOILSCoilCoilcoord: 567..597
NoneNo IPR availableCOILSCoilCoilcoord: 302..325
NoneNo IPR availableCOILSCoilCoilcoord: 982..1009
NoneNo IPR availableCOILSCoilCoilcoord: 632..659
NoneNo IPR availableCOILSCoilCoilcoord: 1014..1041
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 106..127
e-value: 550.0
score: 1.4
coord: 84..105
e-value: 100.0
score: 7.3
coord: 62..83
e-value: 0.0067
score: 25.6
coord: 132..157
e-value: 790.0
score: 0.1
NoneNo IPR availableGENE3D1.20.120.330coord: 611..784
e-value: 0.0012
score: 18.0
coord: 865..1043
e-value: 0.0096
score: 15.0
NoneNo IPR availableGENE3D1.20.1170.10coord: 265..552
e-value: 3.4E-6
score: 25.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..426
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..293
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 8..90
e-value: 2.7E-9
score: 36.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 91..199
e-value: 1.3E-16
score: 59.6
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 46..203
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 42..97
e-value: 8.7E-10
score: 38.1
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 41..62
score: 6.218
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 86..107
score: 8.374
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 64..85
score: 9.221
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 108..129
score: 7.704
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 134..155
score: 6.11

Blast
[Close]
BLAST of TCONS_00027806-protein vs. Swiss-Prot (Human)
Match: LRCC1 (Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=LRRCC1 PE=1 SV=2)

HSP 1 Score: 414.846 bits (1065), Expect = 5.365e-128
Identity = 323/1032 (31.30%), Postives = 555/1032 (53.78%), Query Frame = 0 
Query:   22 ELCLIDSGITSLDEVNLSDALVNLNLHCNHIREVGDQLTHHKTLKYLDLSSNKLKEISGLSGCVNLQFLNLASNYITKVKGIDRLRRLKKLNLTFNQIDDLTGLKAFRKSSHSLQHVELYSNRLNSLKHVIECLSSCNCLQKIELRQGKNTNPICGVPAYRANILAQLPWLKSLDGMDRDGNQCE-SSTHTSDVPGLEELLDFLDPEDLLSEPFQAASLSTISKDETVNNDLSTPKIDSVLLKFKERQQPGSFPANENNVDETKDGCEQDAPQK-----DLMTVDRLHALEKQLEQLTKLYKEKQNSTNKENEIDVHI---TDTTTTTETYSTDDDDESFPSPPKHTKRKPVPLKQGVLTNKVKPDATSQNKGVSC-ATTRPSRFQN-RKPLTRANPITLHKGKPSKPLSERQVRSAEDDETYLNLIHEIDVERERRWKAEQATRKLLDSLKSLKETLIEERKIQEAAVTFNAKLKEALQKERSVKKTFEDSSKSLQEENERLKSRLSECVECSKQNEESVKDLHQTCQQLEKEKSQMEIHYTKTLRDLQYDSGGYKRELKLLRNTTDKQKEQLQQLQELLILREQEHRTILENKVNIDGTEVSKIVEKEVQKCDHRHRELLNQLESKLAEKNKDYEDLEDEFRMALKIEADRYNKLAQAYEEVNKGADELKQSFGELSNKEAKARSLIADLSSMVKEQKFKISELVKHKQEINKNQTGQIQRLEVEIEPLRKIASKFETLQQDKNRMSAHIKGQDSIIQGLRSERRLWGQELAQQGANLAQERGRLDLQIESQQKEIVAFKNKIHDQEDTINIKNKLIEDQTNSIKKMKDDLRVASEENAKLTVEEERLRGERDEQLLQLKETCDGQQEQIEALVSRKEELKDLLQDTEDQLQAEKKDLRRLKTQWEDRDNLIGKLEEKVIKMKTSFDGKEEKLRKECAELQEQNKIIENSLKEFQEKYERENTTKEHEFNLKMKRLISQKEDEIQMEKEKVIQVEEEMRMILTETAAQKKQLEQRVNKLSKAFNDIQNDL 1042
            ++C +D G+ S+ E++L   L  +NLHCN+I ++ + + H   L++LDLSSN++  I GL+    L  LNL+ N ITKV+G++ L  L +LN+++N IDDL+GL       H L++++L+SNR++S+ H+++C+   + L  + L +  + NP+C +P YRA IL  LP L+ LD  +  G     +  ++S +  LE LLD L   D    P        IS+DE ++     P I + + +    +Q  S P++   +      C+   P+K     DL    +L  L+   +Q+ +L  E  NS +   E D      TD T+ ++  +  + +   P      +R  +P     +   +K    + N  VSC    +P   +      + AN   L + +  K    +  +S  +D TY +L+ ++D ERE+RW+AEQA  KL+D +  L +   E+  I   A+    +LKE + +ER+ K   E     LQ E ++L   L +  +  + + + ++ L +T +++E++K Q +    + +++++  +    RE+ LLR +  +++EQ QQL +LL L+EQEHR  LE +      +    + KE+ K + +H +++ + + K+   ++ Y DLE+EFR+AL +EA R+  +   +E V     + K +      KE ++ SLI DL+ MVKEQK K++E+ K KQE   N   QI  LE+ IE  ++ + + E L+ +K ++ + +  ++S+I GLR+ER++WG ELAQQG++LAQ RG+L+ QIES  +E    +       D + IK K+I+DQT +I+K+KD L+   E   +L  +   +     EQL +     D   E++E    RKE+LK  L+  E +L+  +K    L  +W D+  L+  LE +V ++K  F+ KE+KL+ E  +  E  K     L    + ++R+          ++ +L ++K+  I     KV Q+E+EMR +L ET   KK +E ++ +L+ A N+IQ D+
Sbjct:   25 DVCFMDKGLQSISELSLDSTLHAVNLHCNNISKI-EAIDHIWNLQHLDLSSNQISRIEGLNTLTKLCTLNLSCNLITKVEGLEELINLTRLNVSYNHIDDLSGLIPLHGIKHKLRYIDLHSNRIDSIHHLLQCMVGLHFLTNLILEKDGDDNPVCRLPGYRAVILQTLPQLRILDCKNIFGEPVNLTEINSSQLQCLEGLLDNLVSSD---SPL------NISEDEIIDR---MPVITAPIDELVPLEQFASTPSDAV-LTSFMSVCQSSEPEKNNHENDLQNEIKLQKLD---DQILQLLNETSNSIDNVLEKDPRPKRDTDITSESDYGNRKECNRKVP------RRSKIPYDAKTIQT-IKHHNKNYNSFVSCNRKMKPPYLKELYVSSSLANCPMLQESEKPKTEIIKVDQSHSEDNTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLEVMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREIYLLRTSLHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKIDVLSQQYMDLENEFRIALTVEARRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDKGELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLANEKQKCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM 1032
The following BLAST results are available for this feature:
BLAST of TCONS_00027806-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRCC15.365e-12831.30Leucine-rich repeat and coiled-coil domain-contain... [more]
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