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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027587 ID=TCONS_00027587|Name=TCONS_00027587|organism=Clytia hemisphaerica|type=transcript|length=2792bp
GTAAAAACGTAGGTAgggaaaatttctttgaaaattaccTCCGCAGTTTA
TCATTTCAGACTATTAGAGAAAACAGAGAACACTGAATCACGCTTAGCGA
AGAAGTCAAGATGGCGGACCCAAACACGTCAGAAAGTGGTGAAACTCGTG
TTGCCTCAAGACAAAATACAGATACTTCTGTGGCTGAAACCGATCCAAAT
GTCCAGCAAAATGGggatcaacaacaacaacaaccccAAGAGTCGGTTTG
GAAAACTGTTATTACGAGGATTGTTACTTTTTGGATTATTATGCAAGTTG
TAAAATCTTTCACTGGACAGAAAGGAGCGACTTCTCCAGACTCACCATCA
TCGGCATCTGGAAATGTCAAAGGTAACAATCAGCCATGCTcgaatctttt
caaaacaaatgatcaCCTTGAACTTTATCTTTACTACTCTGAGAAAGAAG
ACTTCACTTCATTTGATGCAAAATCTTTATTGTGGCACCAGGGCGATATC
AAATTTGGTAGCTGGTATGATGGCCCAGATAGAGATGGTTCCCGCAAGAA
AACTGGAAAAATCCAAGCCTCTGAGTCTTTAATGAACAATGGTAGCTTGT
ACTATCATATCTTTGTTGTTAAACAAGGATCCTCACCTGATCCGCGGTCA
AAGTTCTACGATAAGTACTCAGTTTCAAGCCAAACAAAGTTGATGACATC
TTTTCGGAAAGAAAGAGTTCATAAAACCAAGAACCTTTTAACTGGAGCAG
CAGACACACAAAATAAATTGGTCCAAAATGACACAAAAGCACCATTAAAA
GTCATATCATTCTGGCATCCTAACTTGACCATCAGTCTTTTGGATGATCA
AACACCATGGCCAAAAAATGGTGTTCCGCAGCCTCTTGATCAATATATCA
AGTTTGATAACATTCAAAATGTCTATTTTCCAGTTGTCTATGTGAATGAC
TATTGGAATTATGTTAGTGACTATATGCCAATCAATGATACAACACCTGA
GCTAGAGTTTCAAATAACTTTTGCGCCCATTTCCATGTTTAAATGGCAAC
TCTACATATCACAGTCTATGCGATCTCAATGGAACCAATATCTTGGTGAC
ACTGCTGAACAGTCTGATCAAGAACAGGATATGATTAAAAGAATTTTGCG
AGAAACAAATCCTTACCTCCTTGCCCTAACAATGATTGTCTCTTTGGTTC
ACAGTGTTTTTGAATTTCTTGCATTCAAAAATGATATTCAATTTTGGAAG
ACACGTAAATCGCTTGAAGGACTATCAGTACGATCTGTGTTTTTCAATGT
TTTCCAAACCCTTGTTGTGTTGCTCTATGTGTTTGACAATGAAACAAACA
CTGTTGTTGTTATCAGCTGCTTTGTTGGCCTGATCATTGAATGTTGGAAA
ATAACCAAAGTTGTTGATATTGGCAGAGACCCTGACCGAAAATGGGGACC
TTTCCCTGCAataaaatttgaagataaatCTACATATGTGCAATCTGAAA
CAAGAGAATATGATAAGCTGGCATTCAAGTATCTCTCATGGGGGTTGTTT
CCATTACTTGCTTGCTATGCAGTTTACTCGTTAATCTATGTTGAGCATAA
AGGGTGGTATTCATTTGTTTTAAGCATAGCCTACGGTTTTCTCCTCACGT
TTGGTTTCATCATGATGACACCGCAGTTATTCATTAATTACAAGATGAAA
AGTGTCGCTCATCTTCCATGGAGAATGTTAACCTATAAAGCTTTGAACAC
TTTTATCGATGATATCTTTGCTTTTGTTATTAAAATGCCAACCCTGTATC
GACTGGGTTGTCTACGTGATGacatcattttctttatttatttgTACCAG
CGTTGGATTTATAGAACAGACATGTCTCGTGTCAATGAGTTTGGAACATC
TGGTGAAGAACCAACAGAAACTGAAAAGAAAGATGAAACCCAAGAAGCAA
TTGCTCCCCATGACGAACAAGAACAAAACACTGAAACCAAAAAAGACCGT
TGAGatcatttcttattttttttatttcgtatATTCTGTTATTTTATAAC
TACCAAATATGTAACTGGTGGACTTTCTCATCTCCAAGACACTTACTTCG
ATCCAGTATTTTTTGATACTTCGATCCAGTATTTTTCGAGCATGTCAAAA
ACTAAACATTTGACTGCTGTCTATtgcattaaaggaagaaattttggcgg
gaatttaatttggtggatatggccgaaaaaattttttcagagggaattaa
ATTAGGCGGTTAACTTTAAAAATTAAGTTTGGCGGCaacttaatttggca
aattttgaccaaatccgccaaatttttcctgccaaaatttctttctttaa
tgtACTATTACGCTTGAAAGAAAGGATCATCAAATCTTTAGGTTATTGGA
ATAAATgattcaaaaatctattttggcTTTTTGACCATTTCAGGatcagt
tttcaaattttaaaatagattcAAGCTTTTGTAAGCTATCTTTTCTTAGT
TTTACTTTCTCCCCGAAATTTCGTTTGGtaccagaaaattttgattacCA
TAGAAATAGTTatattaatgtttttttctatttgataaTAATAATTTTAA
CATTATATCGTCGCTGTAAAATAAGAGTGCCTTATGtccatttttgacat
tttgaggaAATTGCATTTTAAGTATTCTCATGTTTGTAATATTTTACTAT
tgtaatattttcttattttacagCGAcgatatattcaatttcaatgatTT
ATATAATTCTTACCTTGTTCACAGTATTATATCCTATCTATC Run BLAST on NCBI protein sequence of TCONS_00027587-protein >TCONS_00027587-protein ID=TCONS_00027587-protein|Name=TCONS_00027587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp
MADPNTSESGETRVASRQNTDTSVAETDPNVQQNGDQQQQQPQESVWKTV
ITRIVTFWIIMQVVKSFTGQKGATSPDSPSSASGNVKGNNQPCSNLFKTN
DHLELYLYYSEKEDFTSFDAKSLLWHQGDIKFGSWYDGPDRDGSRKKTGK
IQASESLMNNGSLYYHIFVVKQGSSPDPRSKFYDKYSVSSQTKLMTSFRK
ERVHKTKNLLTGAADTQNKLVQNDTKAPLKVISFWHPNLTISLLDDQTPW
PKNGVPQPLDQYIKFDNIQNVYFPVVYVNDYWNYVSDYMPINDTTPELEF
QITFAPISMFKWQLYISQSMRSQWNQYLGDTAEQSDQEQDMIKRILRETN
PYLLALTMIVSLVHSVFEFLAFKNDIQFWKTRKSLEGLSVRSVFFNVFQT
LVVLLYVFDNETNTVVVISCFVGLIIECWKITKVVDIGRDPDRKWGPFPA
IKFEDKSTYVQSETREYDKLAFKYLSWGLFPLLACYAVYSLIYVEHKGWY
SFVLSIAYGFLLTFGFIMMTPQLFINYKMKSVAHLPWRMLTYKALNTFID
DIFAFVIKMPTLYRLGCLRDDIIFFIYLYQRWIYRTDMSRVNEFGTSGEE
PTETEKKDETQEAIAPHDEQEQNTETKKDR Run BLAST on NCBI transcript from alignment at sc0000635:10405..13196 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027587 ID=TCONS_00027587|Name=TCONS_00027587|organism=Clytia hemisphaerica|type=transcript|length=2792bp|location=Sequence derived from alignment at sc0000635:10405..13196 (Clytia hemisphaerica)
GATAGATAGGATATAATACTGTGAACAAGGTAAGAATTATATAAatcatt
gaaattgaatatatcgTCGctgtaaaataagaaaatattacaATAGTAAA
ATATTACAAACATGAGAATACTTAAAATGCAATTtcctcaaaatgtcaaa
aatggaCATAAGGCACTCTTATTTTACAGCGACGATATAATGTTAAAATT
ATTAttatcaaatagaaaaaaacattaatatAACTATTTCTATGgtaatc
aaaattttctggtaCCAAACGAAATTTCGGGGAGAAAGTAAAACTAAGAA
AAGATAGCTTACAAAAGCTTgaatctattttaaaatttgaaaactgatCC
TGAAATGGTCAAAAAgccaaaatagatttttgaatcATTTATTCCAATAA
CCTAAAGATTTGATGATCCTTTCTTTCAAGCGTAATAGTacattaaagaa
agaaattttggcaggaaaaatttggcggatttggtcaaaatttgccaaat
taagttGCCGCCAAACTTAATTTTTAAAGTTAACCGCCTAATttaattcc
ctctgaaaaaattttttcggccatatccaccaaattaaattcccgccaaa
atttcttcctttaatgcaATAGACAGCAGTCAAATGTTTAGTTTTTGACA
TGCTCGAAAAATACTGGATCGAAGTATCAAAAAATACTGGATCGAAGTAA
GTGTCTTGGAGATGAGAAAGTCCACCAGTTACATATTTGGTAGTTATAAA
ATAACAGAATatacgaaataaaaaaaataagaaatgatCTCAACGGTCTT
TTTTGGTTTCAGTGTTTTGTTCTTGTTCGTCATGGGGAGCAATTGCTTCT
TGGGTTTCATCTTTCTTTTCAGTTTCTGTTGGTTCTTCACCAGATGTTCC
AAACTCATTGACACGAGACATGTCTGTTCTATAAATCCAACGCTGGTAca
aataaataaagaaaatgatgtCATCACGTAGACAACCCAGTCGATACAGG
GTTGGCATTTTAATAACAAAAGCAAAGATATCATCGATAAAAGTGTTCAA
AGCTTTATAGGTTAACATTCTCCATGGAAGATGAGCGACACTTTTCATCT
TGTAATTAATGAATAACTGCGGTGTCATCATGATGAAACCAAACGTGAGG
AGAAAACCGTAGGCTATGCTTAAAACAAATGAATACCACCCTTTATGCTC
AACATAGATTAACGAGTAAACTGCATAGCAAGCAAGTAATGGAAACAACC
CCCATGAGAGATACTTGAATGCCAGCTTATCATATTCTCTTGTTTCAGAT
TGCACATATGTAGatttatcttcaaattttatTGCAGGGAAAGGTCCCCA
TTTTCGGTCAGGGTCTCTGCCAATATCAACAACTTTGGTTATTTTCCAAC
ATTCAATGATCAGGCCAACAAAGCAGCTGATAACAACAACAGTGTTTGTT
TCATTGTCAAACACATAGAGCAACACAACAAGGGTTTGGAAAACATTGAA
AAACACAGATCGTACTGATAGTCCTTCAAGCGATTTACGTGTCTTCCAAA
ATTGAATATCATTTTTGAATGCAAGAAATTCAAAAACACTGTGAACCAAA
GAGACAATCATTGTTAGGGCAAGGAGGTAAGGATTTGTTTCTCGCAAAAT
TCTTTTAATCATATCCTGTTCTTGATCAGACTGTTCAGCAGTGTCACCAA
GATATTGGTTCCATTGAGATCGCATAGACTGTGATATGTAGAGTTGCCAT
TTAAACATGGAAATGGGCGCAAAAGTTATTTGAAACTCTAGCTCAGGTGT
TGTATCATTGATTGGCATATAGTCACTAACATAATTCCAATAGTCATTCA
CATAGACAACTGGAAAATAGACATTTTGAATGTTATCAAACTTGATATAT
TGATCAAGAGGCTGCGGAACACCATTTTTTGGCCATGGTGTTTGATCATC
CAAAAGACTGATGGTCAAGTTAGGATGCCAGAATGATATGACTTTTAATG
GTGCTTTTGTGTCATTTTGGACCAATTTATTTTGTGTGTCTGCTGCTCCA
GTTAAAAGGTTCTTGGTTTTATGAACTCTTTCTTTCCGAAAAGATGTCAT
CAACTTTGTTTGGCTTGAAACTGAGTACTTATCGTAGAACTTTGACCGCG
GATCAGGTGAGGATCCTTGTTTAACAACAAAGATATGATAGTACAAGCTA
CCATTGTTCATTAAAGACTCAGAGGCTTGGATTTTTCCAGTTTTCTTGCG
GGAACCATCTCTATCTGGGCCATCATACCAGCTACCAAATTTGATATCGC
CCTGGTGCCACAATAAAGATTTTGCATCAAATGAAGTGAAGTCTTCTTTC
TCAGAGTAGTAAAGATAAAGTTCAAGGtgatcatttgttttgaaaagatt
cgAGCATGGCTGATTGTTACCTTTGACATTTCCAGATGCCGATGATGGTG
AGTCTGGAGAAGTCGCTCCTTTCTGTCCAGTGAAAGATTTTACAACTTGC
ATAATAATCCAAAAAGTAACAATCCTCGTAATAACAGTTTTCCAAACCGA
CTCTTggggttgttgttgttgttgatccCCATTTTGCTGGACATTTGGAT
CGGTTTCAGCCACAGAAGTATCTGTATTTTGTCTTGAGGCAACACGAGTT
TCACCACTTTCTGACGTGTTTGGGTCCGCCATCTTGACTTCTTCGCTAAG
CGTGATTCAGTGTTCTCTGTTTTCTCTAATAGTCTGAAATGATAAACTGC
GGAggtaattttcaaagaaattttcccTACCTACGTTTTTAC Coding sequence (CDS) from alignment at sc0000635:10405..13196 >TCONS_00027587 ID=TCONS_00027587|Name=TCONS_00027587|organism=Clytia hemisphaerica|type=CDS|length=1893bp|location=Sequence derived from alignment at sc0000635:10405..13196 (Clytia hemisphaerica)
TCAACGGTCTTTTTTGGTTTCAGTGTTTTGTTCTTGTTCGTCATGGGGAG
CAATTGCTTCTTGGGTTTCATCTTTCTTTTCAGTTTCTGTTGGTTCTTCA
CCAGATGTTCCAAACTCATTGACACGAGACATGTCTGTTCTATAAATCCA
ACGCTGGTAcaaataaataaagaaaatgatgtCATCACGTAGACAACCCA
GTCGATACAGGGTTGGCATTTTAATAACAAAAGCAAAGATATCATCGATA
AAAGTGTTCAAAGCTTTATAGGTTAACATTCTCCATGGAAGATGAGCGAC
ACTTTTCATCTTGTAATTAATGAATAACTGCGGTGTCATCATGATGAAAC
CAAACGTGAGGAGAAAACCGTAGGCTATGCTTAAAACAAATGAATACCAC
CCTTTATGCTCAACATAGATTAACGAGTAAACTGCATAGCAAGCAAGTAA
TGGAAACAACCCCCATGAGAGATACTTGAATGCCAGCTTATCATATTCTC
TTGTTTCAGATTGCACATATGTAGatttatcttcaaattttatTGCAGGG
AAAGGTCCCCATTTTCGGTCAGGGTCTCTGCCAATATCAACAACTTTGGT
TATTTTCCAACATTCAATGATCAGGCCAACAAAGCAGCTGATAACAACAA
CAGTGTTTGTTTCATTGTCAAACACATAGAGCAACACAACAAGGGTTTGG
AAAACATTGAAAAACACAGATCGTACTGATAGTCCTTCAAGCGATTTACG
TGTCTTCCAAAATTGAATATCATTTTTGAATGCAAGAAATTCAAAAACAC
TGTGAACCAAAGAGACAATCATTGTTAGGGCAAGGAGGTAAGGATTTGTT
TCTCGCAAAATTCTTTTAATCATATCCTGTTCTTGATCAGACTGTTCAGC
AGTGTCACCAAGATATTGGTTCCATTGAGATCGCATAGACTGTGATATGT
AGAGTTGCCATTTAAACATGGAAATGGGCGCAAAAGTTATTTGAAACTCT
AGCTCAGGTGTTGTATCATTGATTGGCATATAGTCACTAACATAATTCCA
ATAGTCATTCACATAGACAACTGGAAAATAGACATTTTGAATGTTATCAA
ACTTGATATATTGATCAAGAGGCTGCGGAACACCATTTTTTGGCCATGGT
GTTTGATCATCCAAAAGACTGATGGTCAAGTTAGGATGCCAGAATGATAT
GACTTTTAATGGTGCTTTTGTGTCATTTTGGACCAATTTATTTTGTGTGT
CTGCTGCTCCAGTTAAAAGGTTCTTGGTTTTATGAACTCTTTCTTTCCGA
AAAGATGTCATCAACTTTGTTTGGCTTGAAACTGAGTACTTATCGTAGAA
CTTTGACCGCGGATCAGGTGAGGATCCTTGTTTAACAACAAAGATATGAT
AGTACAAGCTACCATTGTTCATTAAAGACTCAGAGGCTTGGATTTTTCCA
GTTTTCTTGCGGGAACCATCTCTATCTGGGCCATCATACCAGCTACCAAA
TTTGATATCGCCCTGGTGCCACAATAAAGATTTTGCATCAAATGAAGTGA
AGTCTTCTTTCTCAGAGTAGTAAAGATAAAGTTCAAGGtgatcatttgtt
ttgaaaagattcgAGCATGGCTGATTGTTACCTTTGACATTTCCAGATGC
CGATGATGGTGAGTCTGGAGAAGTCGCTCCTTTCTGTCCAGTGAAAGATT
TTACAACTTGCATAATAATCCAAAAAGTAACAATCCTCGTAATAACAGTT
TTCCAAACCGACTCTTggggttgttgttgttgttgatccCCATTTTGCTG
GACATTTGGATCGGTTTCAGCCACAGAAGTATCTGTATTTTGTCTTGAGG
CAACACGAGTTTCACCACTTTCTGACGTGTTTGGGTCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027587-exon-sc0000635-1491911889:10405..13196 | TCONS_00027587-exon-sc0000635-1491911889:10405..13196 | Clytia hemisphaerica | exon |
| TCONS_00027587-exon-sc0000635-1510915933:10405..13196 | TCONS_00027587-exon-sc0000635-1510915933:10405..13196 | Clytia hemisphaerica | exon |
| TCONS_00027587-exon-sc0000635-1575043694:10405..13196 | TCONS_00027587-exon-sc0000635-1575043694:10405..13196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000635 | supercontig | sc0000635:10405..13196 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008429 | CLPTM1 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00027587 vs. Swiss-Prot (Human)
Match: CLPT1 (Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1) HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0 Identity = 311/558 (55.73%), Postives = 404/558 (72.40%), Query Frame = 3
Query: 246 VWKTVITRIVTFWIIMQVVKSFTGQKGATSPDSPSSASGNVKGNNQPCSNLFKTNDHLELYLYYSEKEDFTSFDAKS-LLWHQGDIKFGSWYDGPDRDGSRKKTGKIQASESLMNNGSLYYHIFVVKQGSSPDPRSK-FYDKYSVSSQTKLMTSFRKERVHKTKNLLTGAADTQNKLVQN-DTKAPLKVISFWHPNLTISLLDDQTPWPKNGVPQPLDQYIKFDNIQNVYFPVVYVNDYWNYVSDYMPINDTTPELEFQITFAPISMFKWQLYISQSMRSQWNQYLGDTA-EQSDQEQDMIKRILRETNPYLLALTMIVSLVHSVFEFLAFKNDIQFWKTRKSLEGLSVRSVFFNVFQTLVVLLYVFDNETNTVVVISCFVGLIIECWKITKVVDIGRDPD-RKWGPFPAIKFEDKSTYVQSETREYDKLAFKYLSWGLFPLLACYAVYSLIYVEHKGWYSFVLSIAYGFLLTFGFIMMTPQLFINYKMKSVAHLPWRMLTYKALNTFIDDIFAFVIKMPTLYRLGCLRDDIIFFIYLYQRWIYRTDMSRVNEFGTSG 1904
V K V+ RI W I + +G +P +G NLF + + L++Y SE E FT F+A S L W Q D+ +G W G + DG + ++ +S+ NGS+Y H++ K G PDPR K Y + + ++++ +++ R KTKNLLTG + ++++ + P++VIS WHPN+TI+++DD TPW K VP PLDQY+KFD + Y+P++Y NDYWN DY PIN++ L +++F P+S+++WQLY +QS +S WN +LGD EQSD+EQD +K L ETNPYLLALT+IVS+VHSVFEFLAFKNDIQFW +R+SLEGLSVRSVFF VFQ+ VVLLY+ DNETN VV +S F+G++I+ WKITKV+D+ D + R G FP + F+DKSTY++S T+ YD +AF+YLSW LFPLL CYAVYSL+Y+EHKGWYS+VLS+ YGFLLTFGFI MTPQLFINYK+KSVAHLPWRMLTYKALNTFIDD+FAFVIKMP +YR+GCLRDD++FFIYLYQRWIYR D +RVNEFG SG
Sbjct: 55 VIKGVLFRIFIIWAISSWFR-----RGP----APQDQAGPGGAPRVASRNLFPKDTLMNLHVYISEHEHFTDFNATSALFWEQHDLVYGDWTSGENSDGCYEHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPRQKALYRRLATVHMSRMINKYKRRRFQKTKNLLTGETEADPEMIKRAEDYGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWNLQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWN-FLGDELYEQSDEEQDSVKVALLETNPYLLALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHRVAGIFPRLSFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSG 602
The following BLAST results are available for this feature:
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