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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026528 ID=TCONS_00026528|Name=TCONS_00026528|organism=Clytia hemisphaerica|type=transcript|length=2420bpRun BLAST on NCBI protein sequence of TCONS_00026528-protein >TCONS_00026528-protein ID=TCONS_00026528-protein|Name=TCONS_00026528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=688bp FSTRSSREKESIIRYIMEHVADEILLRIFSYLDTKDVITCCMVSKRFRRVRun BLAST on NCBI transcript from alignment at sc0000574:79791..113040- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026528 ID=TCONS_00026528|Name=TCONS_00026528|organism=Clytia hemisphaerica|type=transcript|length=33250bp|location=Sequence derived from alignment at sc0000574:79791..113040- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000574:79791..113040- >TCONS_00026528 ID=TCONS_00026528|Name=TCONS_00026528|organism=Clytia hemisphaerica|type=CDS|length=20670bp|location=Sequence derived from alignment at sc0000574:79791..113040- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026528 vs. Swiss-Prot (Human)
Match: FXL18 (F-box/LRR-repeat protein 18 OS=Homo sapiens GN=FBXL18 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 2.155e-26 Identity = 94/341 (27.57%), Postives = 154/341 (45.16%), Query Frame = 3
Query: 981 LSALNLSNC-------------EDWINKDLYGLEAVAQKCTNLRELNVSNLHIHSGDDQLNRLCSIIGEMKNLKKLSIPACSLVNNISIKQSPEKAANNPS--TTPEKTHPTTRLSRQLNDDETLVSAI---GSGLDPIVKGCCGLEELEIVDVGFHS--PFNRVVCDQFI--CPLTSNLRDRNFQEICKLKNLKKLSLAGLSGVGAFNSLVDITSACTKLESLSIAQCGLAGHSNALMHLKNALKNCKSLKHFRMDQPHFHIKEDLLEAFHGCYHLQTVTFINKNGKANKSLSSFVNLFNNCKFLVGFFLFSGITQTDCQRLQSTLMKKFG---SSRPPL 1928
L++LNLS C ED I+ + LE + C NLR LN+S H HS + LC ++ +++L+ LS+P CS+ ++ ++A P+ P R+ Q A S ++K LE LE++ F S P N + C ++ D I +L L+ L+LA L V + LV+I C +L SLS+A G+ G + L + LK+CK L+ R++QP+F +A C LQ + ++++G + + C +V LF+G + C+ LQ +L++++G RP L
Sbjct: 345 LASLNLSGCVHCLSPDSLLRKAEDDIDSSI--LETLVASCCNLRHLNLSAAHHHSSEGLGRHLCQLLARLRHLRSLSLPVCSVADS---APRADRAPAQPAMHAVPRGFGKKVRVGVQSCPSPFSGQACPQPSSVFWSLLKNLPFLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQSVGDSEVAAIGQLAFLRHLTLAQLPSVLTGSGLVNIGLQCQQLRSLSLANLGMMGKVVYMPALSDMLKHCKRLRDLRLEQPYFSANAQFFQALSQCPSLQRLCLVSRSGTLQP--DAVLAFMARCLQVVMCHLFTGESLATCKSLQQSLLRRWGEVTGRRPQL 678 The following BLAST results are available for this feature:
BLAST of TCONS_00026528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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