TCONS_00026528-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00026528-protein
Unique NameTCONS_00026528-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00026528-protein ID=TCONS_00026528-protein|Name=TCONS_00026528-protein|organism=Clytia hemisphaerica|type=polypeptide|length=688bp
FSTRSSREKESIIRYIMEHVADEILLRIFSYLDTKDVITCCMVSKRFRRV
TEDSAIYKNFNVDHNSCLSSGAYLNHLRKHHSRVEKLVFQDFFWLPSTKL
APTFARCKNLVELNVTGCKITSAGLLKILANNPGIKKLGWTISENVFSDE
GHLENFKSAFKNLSSLILHFKTLRTFEIFLPVFDSKDLFVNEFGLHYLKS
SSSNTYGIYVKTQDKFQLHLEDAAVTNRFLHFNLLIMDFVIQTVSKAAET
KSITTLLARGNTICWRHIEPVLTTYTFEKIDLSLSVLAKDQMTWLSKLKK
LEYVNVSQVGHFKSNLMKAIATNCPKLSALNLSNCEDWINKDLYGLEAVA
QKCTNLRELNVSNLHIHSGDDQLNRLCSIIGEMKNLKKLSIPACSLVNNI
SIKQSPEKAANNPSTTPEKTHPTTRLSRQLNDDETLVSAIGSGLDPIVKG
CCGLEELEIVDVGFHSPFNRVVCDQFICPLTSNLRDRNFQEICKLKNLKK
LSLAGLSGVGAFNSLVDITSACTKLESLSIAQCGLAGHSNALMHLKNALK
NCKSLKHFRMDQPHFHIKEDLLEAFHGCYHLQTVTFINKNGKANKSLSSF
VNLFNNCKFLVGFFLFSGITQTDCQRLQSTLMKKFGSSRPPLSVGILPYH
MALKDDGISEKNVPYLFTRDIIYFESSIAVEKANGLLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_014916XLOC_014916Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00026528TCONS_00026528Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainSMARTSM00256fbox_2coord: 20..60
e-value: 4.9E-6
score: 36.1
IPR001810F-box domainPFAMPF12937F-box-likecoord: 22..60
e-value: 2.7E-9
score: 36.7
IPR001810F-box domainPROSITEPS50181FBOXcoord: 14..60
score: 12.412
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 17..64
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 383..408
e-value: 350.0
score: 2.4
coord: 495..521
e-value: 620.0
score: 0.6
coord: 107..131
e-value: 1.5
score: 17.8
coord: 324..352
e-value: 24.0
score: 11.6
coord: 522..548
e-value: 630.0
score: 0.5
coord: 298..323
e-value: 360.0
score: 2.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 429..551
e-value: 2.3E-7
score: 29.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 240..417
e-value: 3.7E-15
score: 55.0
coord: 80..202
e-value: 1.3E-7
score: 30.4
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 552..629
e-value: 0.0043
score: 15.6
NoneNo IPR availableGENE3D1.20.1280.50coord: 3..79
e-value: 3.3E-10
score: 39.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 405..428
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 442..615
coord: 251..396
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 96..170

Blast
[Close]
BLAST of TCONS_00026528-protein vs. Swiss-Prot (Human)
Match: FXL18 (F-box/LRR-repeat protein 18 OS=Homo sapiens GN=FBXL18 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.847e-33
Identity = 160/674 (23.74%), Postives = 285/674 (42.28%), Query Frame = 0 
Query:   21 ADEILLRIFSYLDTKDVI-----TCCMVSKRFRRVTEDSAIYKNFNVDHNSCLSSGAYLNHLRKHHSRVEKLVFQDFFWLPSTKLAPTFARCKNLVELNVTGCKITSAGLLKILANNPGIKKLGWTISENVFSDE---------GHLENFKSAF-----------KNLSSLILHFKTL-RTFEIFLPVFDSKDLFVNEFGL-HY--LKSSSSNTYGIYVKTQDKFQLHLEDAAVTNRF---LHFNLLIMDFVIQTVSKAAETKSITTLLARGNTICWRHIEPVLTTYTFEKIDLSLSVLAKDQMTWLSKLKKLEYVNVSQV----GHFKSNLMKAIATNCPKLSALNLSNC-------------EDWINKDLYGLEAVAQKCTNLRELNVSNLHIHSGDDQLNRLCSIIGEMKNLKKLSIPACSLVNNISIKQSPEKAANNPS--TTPEKTHPTTRLSRQLNDDETLVSAI---GSGLDPIVKGCCGLEELEIVDVGFHS--PFNRVVCDQFICPLT--SNLRDRNFQEICKLKNLKKLSLAGLSGVGAFNSLVDITSACTKLESLSIAQCGLAGHSNALMHLKNALKNCKSLKHFRMDQPHFHIKEDLLEAFHGCYHLQTVTFINKNGKANKSLSSFVNLFNNCKFLVGFFLFSGITQTDCQRLQSTLMKKFG 636
            +DEILL I S++ + D+I     TC    ++   +  D ++     +  +   S       +++    +++L     +WLP + +    ARC++LV++N++GC +TS  L K+L+    ++ L   +S    + +           +   K               +L  L+L+F+ L RT E       S  L V +  + HY  L+   +     Y+  Q+  +L+L  A +++R    LH       F+I      AE+ +   LL           + +      + + L  S L    +    K     Y + S+     GH    ++     +   L++LNLS C             ED I+  +  LE +   C NLR LN+S  H HS +     LC ++  +++L+ LS+P CS+ ++       ++A   P+    P       R+  Q         A     S    ++K    LE LE++   F S  P N       + P +   ++ D     I +L  L+ L+LA L  V   + LV+I   C +L SLS+A  G+ G    +  L + LK+CK L+  R++QP+F       +A   C  LQ +  ++++G       + +     C  +V   LF+G +   C+ LQ +L++++G
Sbjct:   32 SDEILLHILSHVPSTDLILNVRRTC----RKLAALCLDKSLIHTVLLQKDYQASEDKVRQLVKEIGREIQQLSMAGCYWLPGSTVE-HVARCRSLVKVNLSGCHLTSLRLSKMLSALQHLRSLAIDVSPGFDASQLSSECKATLSRVRELKQTLFTPSYGVVPCCTSLEKLLLYFEILDRTRE---GAILSGQLMVGQSNVPHYQNLRVFYARLAPGYIN-QEVVRLYL--AVLSDRTPQNLH------AFLISVPGSFAESGATKNLL-----------DSMARNVVLDALQLPKSWLNGSSLLQHMKFNNPFYFSFSRCTLSGGHLIQQVING-GKDLRSLASLNLSGCVHCLSPDSLLRKAEDDIDSSI--LETLVASCCNLRHLNLSAAHHHSSEGLGRHLCQLLARLRHLRSLSLPVCSVADS---APRADRAPAQPAMHAVPRGFGKKVRVGVQSCPSPFSGQACPQPSSVFWSLLKNLPFLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQSVGDSEVAAIGQLAFLRHLTLAQLPSVLTGSGLVNIGLQCQQLRSLSLANLGMMGKVVYMPALSDMLKHCKRLRDLRLEQPYFSANAQFFQALSQCPSLQRLCLVSRSGTLQP--DAVLAFMARCLQVVMCHLFTGESLATCKSLQQSLLRRWG 669
The following BLAST results are available for this feature:
BLAST of TCONS_00026528-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FXL181.847e-3323.74F-box/LRR-repeat protein 18 OS=Homo sapiens GN=FBX... [more]
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