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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024743 ID=TCONS_00024743|Name=TCONS_00024743|organism=Clytia hemisphaerica|type=transcript|length=2262bp
TGCCTTATTTTAAAATTGCAGCTTTAGAGAGATGGGATTTATATAACCAA
TTTTCGCCTATGTTGTTAAAAGTGCGACCATACAATGTAGCAAAACTGCT
TTGCTCATAAAGTTCCCTTTTGCAATAAAACTGGTAAAGAATTTCTCTCT
AATCTAGTTTTATTATGGTTAGGCAGACTGTTTTTGTATGATATACCTAA
TTAAGAGTGCTTCATTCTCCATCGAAAATTCAGATACTTTGTAATTGTTG
ATTATGTTTTAGCTTGCACAACAAATAACAACataaaaaatgggtaaaaa
agaAAGCACAGCTGATGAGAGTAATGGAGATATCACACTGTCAGAAATCA
AAGTTGAGCGACCAAGTTATGATGAACTTTTGCCCATGCTGAACTTGATC
TCTAAACCATTAGCAAACAAAAAAGTCACAAAACGCATCTACAAAGTTGT
CAAGAAAGCAGCTAATAAGAAAAAGTTGAGACGTGGTGTCAAAGAAGTCG
GGAAAGCTTTGCGCAAAAAGGAAAAGGGACTGGTCATTTTGGCTGGAGAT
GTTTCTCCGCTTGATGTATATTCACATATGCCAATTTTGTGCGAGGAAAG
CAATATTCCATATTGTTATGTTCCGGCCAGGATTGACCTTGGTCTTGCAA
GTCAAACAAAACGTGCGACTTGTGTTGTCATGATCAAAAAAGACGAAGAC
TACGAAGACTTGTACTCAGAACTAAAAGAAACACTGAAAAGTTTCCCACT
CCCAATTTGAGATGTAATTTGATGGGAGGGGTACTTTTATATTATTATCA
GAACGAttgcttttattatatttttactTAGGgtatacttttttgaaaaa
ttgtggttttgaaaatgtttttcgtTCATTCTTTTCATGAGCAAAATTCG
TTTTTCTGTATTTATGTAAATCCCACAACAACTAAATTGCTCATCCTTTG
CTTCTTTCATAGGATTCATAGGATAAATTTTTATTGTCCTCAAATGATGG
ATCATTGTTTTCAAGCCCACCAATTTATTAAAGCTATTATTAATTCCTTA
TAGGCTCCTTTACTACAAACTATTATTCTAGCCTGTTTATTTCTCATTCC
AGGCTGAAAcacaaaatgaaataaaacaaaCGTCAAAATAACATGTTCAT
GTTATGGGCACTTATGGGGAATTTTTTTGGCAATGGAGTCCACGAGGACT
TGAATTACACATACACCAATCATGAAGAGAAggatgaattttttgaaatc
tccaTAAATGATATAAACAGAACACTTCTCCAGTCTGAGGAAGAAAGTGT
GGCAGATATTTTGGCAAGTATTGACCGTGAATGTGATTTGCTGATCAATA
AATGGAAAGCAGAACAAAGATTTCTCAAATCCAGAATGTTATTTACAGAA
GATGCCAAATTTCTTGAGAACGTCCATCTGGCTACTTAGCTTTTCGTGAA
GTTGAGCCAATTCAGAAATTATGCGAGGAATTGCTACAGCAAAACCAAGA
GCTCTATCCGCAAATTATTTTTGTCGATGGAAATGGTCTATTACACCCAA
TGAAATTTGGCCTAGCATGCCATCTTGGAGTTGTTTTGAATGTACCCACT
GTTGGAATTGCTAAAAAGCTGTTTCATGTTGATGGCCTTGAGAAAAGTGT
AGTCATGAAAAATGCATTTAAAAGTAGGCTTCTAAGGAAAGGCGATACTT
ATGATTTGGTTGGTGAGTCCAACTTTGTTTATGGTACTGCTTTACGAAGC
ACTGATCATAGCTCTAATCCTGTCTTCATCTCAGTTGGAAATAAAATTAC
ACTGAAAACAGCTGTTCGCCTCGTAAATAATTGCTGTTTATATCGCATAC
CTGAGCCTGTTCGCTTAGCTGATCAATATTCCCGTGAGCATATTCGAATG
TATTATGAAAATCATGTCAAAGAAGGACAACAAGAACATGCAGTTCTCAA
CAAACGATTTCTTGAACTCTCTGAAGCTGTGGAAAAACGAAAGGCTGAGA
AATATAACAACACTGTCTGATTTTAAAGTACACTttcaaatttgagaaaa
attatctGTTAACTTGATTTTAAAATCCTTAGATTTTTCTTTCTTAGCCT
CTTATTTTGTTTACTAGGATTATTCTTGTCAAATTAAAATGAATAGAATC
TTCATGAAATTCTAATGtcacaaatttcaaatttcaactaCTTCAGTTTG
TAGCATTATTTATACaaggtttcaaattttgaattttatcaagACTGAGG
ACTTTTTAAATT Run BLAST on NCBI protein sequence of TCONS_00024743-protein >TCONS_00024743-protein ID=TCONS_00024743-protein|Name=TCONS_00024743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MGKKESTADESNGDITLSEIKVERPSYDELLPMLNLISKPLANKKVTKRI
YKVVKKAANKKKLRRGVKEVGKALRKKEKGLVILAGDVSPLDVYSHMPIL
CEESNIPYCYVPARIDLGLASQTKRATCVVMIKKDEDYEDLYSELKETLK
SFPLPI Run BLAST on NCBI transcript from alignment at sc0000509:197029..199435- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024743 ID=TCONS_00024743|Name=TCONS_00024743|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at sc0000509:197029..199435- (Clytia hemisphaerica)
TGCCTTATTTTAAAATTGCAGCTTTAGAGAGATGGGATTTATATAACCAA
TTTTCGCCTATGTTGTTAAAAGTGCGACCATACAATGTAGCAAAACTGCT
TTGCTCATAAAGTTCCCTTTTGCAATAAAACTGGTAAAGAATTTCTCTCT
AATCTAGTTTTATTATGGTTAGGCAGACTGTTTTTGTATGATATACCTAA
TTAAGAGTGCTTCATTCTCCATCGAAAATTCAGATACTTTGTAATTGTTG
ATTATGTTTTAGCTTGCACAACAAATAACAACATAAAAAATGGGTAAAAA
AGAAAGCACAGCTGATGAGAGTAATGGAGATATCACACTGTCAGAAATCA
AAGTTGAGCGACCAAGTTATGATGAACTTTTGCCCATGCTGAACTTGATC
TCTAAACCATTAGCAAACAAAAAAGTCACAAAACGCATCTACAAAGTTGT
CAAGAAAGCAGCTAATAAGAAAAAGTTGAGACGTGGTGTCAAAGAAGTCG
GGAAAGCTTTGCGCAAAAAGGAAAAGGGACTGGTCATTTTGGCTGGAGAT
GTTTCTCCGCTTGATGTATATTCACATATGCCAATTTTGTGCGAGGAAAG
CAATATTCCATATTGTTATGTTCCGGCCAGGATTGACCTTGGTCTTGCAA
GTCAAACAAAACGTGCGACTTGTGTTGTCATGATCAAAAAAGACGAAGAC
TACGAAGACTTGTACTCAGAACTAAAAGAAACACTGAAAAGTTTCCCACT
CCCAATTTGAGATGTAATTTGATGGGAGGGGTACTTTTATATTATTATCA
GAACGATTGCTTTTATTATATTTTTACTTAGGGTATACTTTTTTGAAAAA
TTGTGGTTTTGAAAATGTTTTTCGTTCATTCTTTTCATGAGCAAAATTCG
TTTTTCTGTATTTATGTAAATCCCACAACAACTAAATTGCTCATCCTTTG
CTTCTTTCATAGGATTCATAGGATAAATTTTTATTGTCCTCAAATGATGG
ATCATTGTTTTCAAGCCCACCAATTTATTAAAGCTATTATTAATTCCTTA
TAGGCTCCTTTACTACAAACTATTATTCTAGCCTGTTTATTTCTCATTCC
AGGCTGAAACACAAAATGAAATAAAACAAACGTCAAAATAACATGTTCAT
GTTATGGGCACTTATGGGGAATTTTTTTGGCAATGGAGTCCACGAGGACT
TGAATTACACATACACCAATCATGAAGAGAAGGATGAATTTTTTGAAATC
TCCATAAATGATATAAACAGAACACTTCTCCAGTCTGAGGAAGAAAGTGT
GGCAGATATTTTGGCAAGTATTGACCGTGAATGTGATTTGCTGATCAATA
AATGGAAAGCAGAACAAAGATTTCTCAAATCCAGAATGTTATTTACAGAA
GATGCCAAATTTCTTGAGAACGTCCATCTGGTAGGAGGTGTTGATATTTC
TTTTCCTAAAGATAAGAATGATCTGGTCAGTGCATGTGTATGTCTTGTTG
TTCTATCTTACCCTGACTTAAAACTGAAGTACAGGAAATGTGAAATGGTA
CATTTGACATCTATTTATATTCCAGGCTACTTAGCTTTTCGTGAAGTTGA
GCCAATTCAGAAATTATGCGAGGAATTGCTACAGCAAAACCAAGAGCTCT
ATCCGCAAATTATTTTTGTCGATGGAAATGGTCTATTACACCCAATGAAA
TTTGGCCTAGCATGCCATCTTGGAGTTGTTTTGAATGTACCCACTGTTGG
AATTGCTAAAAAGCTGTTTCATGTTGATGGCCTTGAGAAAAGTGTAGTCA
TGAAAAATGCATTTAAAAGTAGGCTTCTAAGGAAAGGCGATACTTATGAT
TTGGTTGGTGAGTCCAACTTTGTTTATGGTACTGCTTTACGAAGCACTGA
TCATAGCTCTAATCCTGTCTTCATCTCAGTTGGAAATAAAATTACACTGA
AAACAGCTGTTCGCCTCGTAAATAATTGCTGTTTATATCGCATACCTGAG
CCTGTTCGCTTAGCTGATCAATATTCCCGTGAGCATATTCGAATGTATTA
TGAAAATCATGTCAAAGAAGGACAACAAGAACATGCAGTTCTCAACAAAC
GATTTCTTGAACTCTCTGAAGCTGTGGAAAAACGAAAGGCTGAGAAATAT
AACAACACTGTCTGATTTTAAAGTACACTTTCAAATTTGAGAAAAATTAT
CTGTTAACTTGATTTTAAAATCCTTAGATTTTTCTTTCTTAGCCTCTTAT
TTTGTTTACTAGGATTATTCTTGTCAAATTAAAATGAATAGAATCTTCAT
GAAATTCTAATGTCACAAATTTCAAATTTCAACTACTTCAGTTTGTAGCA
TTATTTATACAAGGTTTCAAATTTTGAATTTTATCAAGACTGAGGACTTT
TTAAATT Coding sequence (CDS) from alignment at sc0000509:197029..199435- >TCONS_00024743 ID=TCONS_00024743|Name=TCONS_00024743|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000509:197029..199435- (Clytia hemisphaerica)
ATGGGTAAAAAAGAAAGCACAGCTGATGAGAGTAATGGAGATATCACACT
GTCAGAAATCAAAGTTGAGCGACCAAGTTATGATGAACTTTTGCCCATGC
TGAACTTGATCTCTAAACCATTAGCAAACAAAAAAGTCACAAAACGCATC
TACAAAGTTGTCAAGAAAGCAGCTAATAAGAAAAAGTTGAGACGTGGTGT
CAAAGAAGTCGGGAAAGCTTTGCGCAAAAAGGAAAAGGGACTGGTCATTT
TGGCTGGAGATGTTTCTCCGCTTGATGTATATTCACATATGCCAATTTTG
TGCGAGGAAAGCAATATTCCATATTGTTATGTTCCGGCCAGGATTGACCT
TGGTCTTGCAAGTCAAACAAAACGTGCGACTTGTGTTGTCATGATCAAAA
AAGACGAAGACTACGAAGACTTGTACTCAGAACTAAAAGAAACACTGAAA
AGTTTCCCACTCCCAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024743-exon-sc0000509-1575043694:198006..199435 | TCONS_00024743-exon-sc0000509-1575043694:198006..199435 | Clytia hemisphaerica | exon |
| TCONS_00024743-exon-sc0000509-1575043694:197029..197860 | TCONS_00024743-exon-sc0000509-1575043694:197029..197860 | Clytia hemisphaerica | exon |
| TCONS_00024743-exon-sc0000509-1510915933:198006..199435 | TCONS_00024743-exon-sc0000509-1510915933:198006..199435 | Clytia hemisphaerica | exon |
| TCONS_00024743-exon-sc0000509-1510915933:197029..197860 | TCONS_00024743-exon-sc0000509-1510915933:197029..197860 | Clytia hemisphaerica | exon |
| TCONS_00024743-exon-sc0000509-1491911889:198006..199435 | TCONS_00024743-exon-sc0000509-1491911889:198006..199435 | Clytia hemisphaerica | exon |
| TCONS_00024743-exon-sc0000509-1491911889:197029..197860 | TCONS_00024743-exon-sc0000509-1491911889:197029..197860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000509 | supercontig | sc0000509:197029..199435 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005730 | nucleolus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005730 |
nucleolus |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
BLAST of TCONS_00024743 vs. Swiss-Prot (Human)
Match: ENDOV (Endonuclease V OS=Homo sapiens GN=ENDOV PE=1 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.462e-44 Identity = 85/158 (53.80%), Postives = 117/158 (74.05%), Query Frame = 2
Query: 1427 SGYLAFREVEPIQKLCXXXXXXXXXXYPQIIFVDGNGLLHPMKFGLACHLGVVLNVPTVGIAKKLFHVDGLEKSVVMKNAFKSRLLR-KGDTYDLVGESNFVYGTALRSTDHSSNPVFISVGNKITLKTAVRLVNNCCLYRIPEPVRLADQYSREHIR 1897
SG+LAFREV + +L ++L ++ L PQ++ VDGNG+LH FG+ACHLGV+ ++P VG+AKKL VDGLE + + K K RLL+ +GD++ L+G+S V G ALRS D S+ P++ISVG++++L+ AVRL CC +RIPEPVR AD SREHIR
Sbjct: 93 SGFLAFREVPFLLELVQQLREKEPGLMPQVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHKE--KIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRFRIPEPVRQADICSREHIR 248
The following BLAST results are available for this feature:
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