TCONS_00024743-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00024743-protein
Unique NameTCONS_00024743-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length156

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00024743-protein ID=TCONS_00024743-protein|Name=TCONS_00024743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MGKKESTADESNGDITLSEIKVERPSYDELLPMLNLISKPLANKKVTKRI
YKVVKKAANKKKLRRGVKEVGKALRKKEKGLVILAGDVSPLDVYSHMPIL
CEESNIPYCYVPARIDLGLASQTKRATCVVMIKKDEDYEDLYSELKETLK
SFPLPI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_013898XLOC_013898Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00024743TCONS_00024743Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064L30e-like
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005730 nucleolus
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018492Ribosomal protein L7Ae/L8/Nhp2 familyPRINTSPR00881L7ARS6FAMILYcoord: 82..95
score: 37.34
coord: 98..108
score: 54.13
coord: 108..122
score: 34.55
coord: 63..77
score: 31.82
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryotePRINTSPR00883NUCLEARHMGcoord: 49..64
score: 36.25
coord: 36..49
score: 32.86
coord: 66..76
score: 47.27
coord: 110..122
score: 36.92
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 49..141
e-value: 1.0E-26
score: 92.4
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 28..154
e-value: 8.2E-39
score: 131.8
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 30..151

Blast
[Close]
BLAST of TCONS_00024743-protein vs. Swiss-Prot (Human)
Match: NHP2 (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.453e-48
Identity = 64/131 (48.85%), Postives = 102/131 (77.86%), Query Frame = 0 
Query:   26 SYDELLPMLNLISKPLANKKVTKRIYKVVKKAANKKKLRRGVKEVGKALRKKEKGLVILAGDVSPLDVYSHMPILCEESNIPYCYVPARIDLGLASQTKRATCVVMIKKDEDYEDLYSELKETLKSFPLPI 156
            +Y ELL   N I++PLA++++T+++YK +KKA  +K++RRGVKEV K + K EKG+++LAGD  P++VY H+P++CE+ N+PY Y+P++ DLG A+ +KR TCV+M+K  E+Y++ Y E  E ++S PLP+
Sbjct:   23 TYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSLPLPL 153
The following BLAST results are available for this feature:
BLAST of TCONS_00024743-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NHP26.453e-4848.85H/ACA ribonucleoprotein complex subunit 2 OS=Homo ... [more]
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